Enzymology under global change: organic nitrogen turnover in alpine and sub-Arctic soils

2011 ◽  
Vol 39 (1) ◽  
pp. 309-314 ◽  
Author(s):  
James T. Weedon ◽  
Rien Aerts ◽  
George A. Kowalchuk ◽  
Peter M. van Bodegom

Understanding global change impacts on the globally important carbon storage in alpine, Arctic and sub-Arctic soils requires knowledge of the mechanisms underlying the balance between plant primary productivity and decomposition. Given that nitrogen availability limits both processes, understanding the response of the soil nitrogen cycle to shifts in temperature and other global change factors is crucial for predicting the fate of cold biome carbon stores. Measurements of soil enzyme activities at different positions of the nitrogen cycling network are an important tool for this purpose. We review a selection of studies that provide data on potential enzyme activities across natural, seasonal and experimental gradients in cold biomes. Responses of enzyme activities to increased nitrogen availability and temperature are diverse and seasonal dynamics are often larger than differences due to experimental treatments, suggesting that enzyme expression is regulated by a combination of interacting factors reflecting both nutrient supply and demand. The extrapolation from potential enzyme activities to prediction of elemental nitrogen fluxes under field conditions remains challenging. Progress in molecular ‘-omics’ approaches may eventually facilitate deeper understanding of the links between soil microbial community structure and biogeochemical fluxes. In the meantime, accounting for effects of the soil spatial structure and in situ variations in pH and temperature, better mapping of the network of enzymatic processes and the identification of rate-limiting steps under different conditions should advance our ability to predict nitrogen fluxes.

Soil Research ◽  
2018 ◽  
Vol 56 (3) ◽  
pp. 235 ◽  
Author(s):  
X. Y. Liu ◽  
M. Rezaei Rashti ◽  
M. Esfandbod ◽  
B. Powell ◽  
C. R. Chen

Liming has been widely used to decrease soil acidity, but its effects on soil nitrogen (N) availability and microbial processes in sugarcane fields are largely unknown. Adjacent sugarcane soils at 26 months after liming (26ML), 14 months after liming (14ML) and with no lime amendment (CK) in Bundaberg, Australia, were selected to investigate the effect of liming on soil N bioavailability and microbial activity in a long-term subtropical sugarcane cropping system. Liming in both 14ML and 26ML treatments significantly increased soil pH (by 1.2–1.4 units) and exchangeable Ca2+ (>2-fold) compared with the CK treatment. The lower concentrations of hot water extractable organic carbon (C) and total N and ammonium-N in the 14ML, compared with the CK and 26ML treatments, can be attributed to the absence of trash blanket placement in the former. Enhanced microbial immobilisation due to improved soil pH by liming (14ML and 26ML treatments) led to increased soil microbial biomass C and N, particularly in the presence of a trash blanket (26 ML treatment), but decreased soil respiration and metabolic quotient indicated that acidic stress conditions were alleviated in the liming treatments. Soil pH was the main factor governing soil enzyme activities, with an overall decrease in all enzyme activities in response to liming. Overall, liming and trash blanket practices improved sugarcane soil fertility. Further study is warranted to investigate the shifts in soil microbial community composition and the diversity and abundance of N-associated functional genes in response to liming in sugarcane fields.


2015 ◽  
Vol 112 (22) ◽  
pp. 7033-7038 ◽  
Author(s):  
Thomas W. Crowther ◽  
Stephen M. Thomas ◽  
Daniel S. Maynard ◽  
Petr Baldrian ◽  
Kristofer Covey ◽  
...  

Decomposition of organic material by soil microbes generates an annual global release of 50–75 Pg carbon to the atmosphere, ∼7.5–9 times that of anthropogenic emissions worldwide. This process is sensitive to global change factors, which can drive carbon cycle–climate feedbacks with the potential to enhance atmospheric warming. Although the effects of interacting global change factors on soil microbial activity have been a widespread ecological focus, the regulatory effects of interspecific interactions are rarely considered in climate feedback studies. We explore the potential of soil animals to mediate microbial responses to warming and nitrogen enrichment within a long-term, field-based global change study. The combination of global change factors alleviated the bottom-up limitations on fungal growth, stimulating enzyme production and decomposition rates in the absence of soil animals. However, increased fungal biomass also stimulated consumption rates by soil invertebrates, restoring microbial process rates to levels observed under ambient conditions. Our results support the contemporary theory that top-down control in soil food webs is apparent only in the absence of bottom-up limitation. As such, when global change factors alleviate the bottom-up limitations on microbial activity, top-down control becomes an increasingly important regulatory force with the capacity to dampen the strength of positive carbon cycle–climate feedbacks.


2011 ◽  
Vol 109 (1-3) ◽  
pp. 63-83 ◽  
Author(s):  
Kathryn M. Docherty ◽  
Teri C. Balser ◽  
Brendan J. M. Bohannan ◽  
Jessica L. M. Gutknecht

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6497 ◽  
Author(s):  
Zengru Wang ◽  
Yubing Liu ◽  
Lina Zhao ◽  
Wenli Zhang ◽  
Lichao Liu

The importance of soil microbial flora in agro-ecosystems is well known, but there is limited understanding of the effects of long-term fertilization on soil microbial community succession in different farming management practices. Here, we report the responses of soil microbial community structure, abundance and activity to chemical (CF) and organic fertilization (OF) treatments in a sandy agricultural system of wheat-maize rotation over a 17-year period. Illumina MiSeq sequencing showed that the microbial community diversity and richness showed no significant changes in bacteria but decreased in fungi under both CF and OF treatments. The dominant species showing significant differences between fertilization regimes were Actinobacteria, Acidobacteria and Ascomycota at the phylum level, as well as some unclassified genera of other phyla at the genus level. As expected, soil organic matter content, nutrient element concentrations and bacterial abundance were enhanced by both types of fertilization, especially in OF, but fungal abundance was inhibited by OF. Redundancy analysis revealed that soil enzyme activities were closely related to both bacterial and fungal communities, and the soil nutrient, texture and pH value together determined the community structures. Bacterial abundance might be the primary driver of crop yield, and soil enzyme activities may reflect crop yield. Our results suggest a relatively permanent response of soil microbial communities to the long-term fertilization regimes in a reclaimed sandy agro-ecosystem from a mobile dune, and indicate that the appropriate dosage of chemical fertilizers is beneficial to sandy soil sustainability.


2020 ◽  
Vol 14 (12) ◽  
pp. 3038-3053
Author(s):  
Joana Séneca ◽  
Petra Pjevac ◽  
Alberto Canarini ◽  
Craig W. Herbold ◽  
Christos Zioutis ◽  
...  

Abstract Nitrification is a fundamental process in terrestrial nitrogen cycling. However, detailed information on how climate change affects the structure of nitrifier communities is lacking, specifically from experiments in which multiple climate change factors are manipulated simultaneously. Consequently, our ability to predict how soil nitrogen (N) cycling will change in a future climate is limited. We conducted a field experiment in a managed grassland and simultaneously tested the effects of elevated atmospheric CO2, temperature, and drought on the abundance of active ammonia-oxidizing bacteria (AOB) and archaea (AOA), comammox (CMX) Nitrospira, and nitrite-oxidizing bacteria (NOB), and on gross mineralization and nitrification rates. We found that N transformation processes, as well as gene and transcript abundances, and nitrifier community composition were remarkably resistant to individual and interactive effects of elevated CO2 and temperature. During drought however, process rates were increased or at least maintained. At the same time, the abundance of active AOB increased probably due to higher NH4+ availability. Both, AOA and comammox Nitrospira decreased in response to drought and the active community composition of AOA and NOB was also significantly affected. In summary, our findings suggest that warming and elevated CO2 have only minor effects on nitrifier communities and soil biogeochemical variables in managed grasslands, whereas drought favors AOB and increases nitrification rates. This highlights the overriding importance of drought as a global change driver impacting on soil microbial community structure and its consequences for N cycling.


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