Automated video monitoring of insect pollinators in the field

2020 ◽  
Vol 4 (1) ◽  
pp. 87-97 ◽  
Author(s):  
Luca Pegoraro ◽  
Oriane Hidalgo ◽  
Ilia J. Leitch ◽  
Jaume Pellicer ◽  
Sarah E. Barlow

Ecosystems are at increasing risk from the global pollination crisis. Gaining better knowledge about pollinators and their interactions with plants is an urgent need. However, conventional methods of manually recording pollinator activity in the field can be time- and cost-consuming in terms of labour. Field-deployable video recording systems have become more common in ecological studies as they enable the capture of plant-insect interactions in fine detail. Standard video recording can be effective, although there are issues with hardware reliability under field-conditions (e.g. weatherproofing), and reviewing raw video manually is a time-consuming task. Automated video monitoring systems based on motion detection partly overcome these issues by only recording when activity occurs hence reducing the time needed to review footage during post-processing. Another advantage of these systems is that the hardware has relatively low power requirements. A few systems have been tested in the field which permit the collection of large datasets. Compared with other systems, automated monitoring allows vast increases in sampling at broad spatiotemporal scales. Some tools such as post-recording computer vision software and data-import scripts exist, further reducing users’ time spent processing and analysing the data. Integrated computer vision and automated species recognition using machine learning models have great potential to further the study of pollinators in the field. Together, it is predicted that future advances in technology-based field monitoring methods will contribute significantly to understanding the causes underpinning pollinator declines and, hence, developing effective solutions for dealing with this global challenge.

Metabolites ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 558
Author(s):  
J. William Allwood ◽  
Alex Williams ◽  
Henriette Uthe ◽  
Nicole M. van Dam ◽  
Luis A. J. Mur ◽  
...  

Climate change and an increasing population, present a massive global challenge with respect to environmentally sustainable nutritious food production. Crop yield enhancements, through breeding, are decreasing, whilst agricultural intensification is constrained by emerging, re-emerging, and endemic pests and pathogens, accounting for ~30% of global crop losses, as well as mounting abiotic stress pressures, due to climate change. Metabolomics approaches have previously contributed to our knowledge within the fields of molecular plant pathology and plant–insect interactions. However, these remain incredibly challenging targets, due to the vast diversity in metabolite volatility and polarity, heterogeneous mixtures of pathogen and plant cells, as well as rapid rates of metabolite turn-over. Unravelling the systematic biochemical responses of plants to various individual and combined stresses, involves monitoring signaling compounds, secondary messengers, phytohormones, and defensive and protective chemicals. This demands both targeted and untargeted metabolomics approaches, as well as a range of enzymatic assays, protein assays, and proteomic and transcriptomic technologies. In this review, we focus upon the technical and biological challenges of measuring the metabolome associated with plant stress. We illustrate the challenges, with relevant examples from bacterial and fungal molecular pathologies, plant–insect interactions, and abiotic and combined stress in the environment. We also discuss future prospects from both the perspective of key innovative metabolomic technologies and their deployment in breeding for stress resistance.


2021 ◽  
Vol 118 (2) ◽  
pp. e2002545117
Author(s):  
Toke T. Høye ◽  
Johanna Ärje ◽  
Kim Bjerge ◽  
Oskar L. P. Hansen ◽  
Alexandros Iosifidis ◽  
...  

Most animal species on Earth are insects, and recent reports suggest that their abundance is in drastic decline. Although these reports come from a wide range of insect taxa and regions, the evidence to assess the extent of the phenomenon is sparse. Insect populations are challenging to study, and most monitoring methods are labor intensive and inefficient. Advances in computer vision and deep learning provide potential new solutions to this global challenge. Cameras and other sensors can effectively, continuously, and noninvasively perform entomological observations throughout diurnal and seasonal cycles. The physical appearance of specimens can also be captured by automated imaging in the laboratory. When trained on these data, deep learning models can provide estimates of insect abundance, biomass, and diversity. Further, deep learning models can quantify variation in phenotypic traits, behavior, and interactions. Here, we connect recent developments in deep learning and computer vision to the urgent demand for more cost-efficient monitoring of insects and other invertebrates. We present examples of sensor-based monitoring of insects. We show how deep learning tools can be applied to exceptionally large datasets to derive ecological information and discuss the challenges that lie ahead for the implementation of such solutions in entomology. We identify four focal areas, which will facilitate this transformation: 1) validation of image-based taxonomic identification; 2) generation of sufficient training data; 3) development of public, curated reference databases; and 4) solutions to integrate deep learning and molecular tools.


2019 ◽  
Vol 3 (6) ◽  
pp. 723-729
Author(s):  
Roslyn Gleadow ◽  
Jim Hanan ◽  
Alan Dorin

Food security and the sustainability of native ecosystems depends on plant-insect interactions in countless ways. Recently reported rapid and immense declines in insect numbers due to climate change, the use of pesticides and herbicides, the introduction of agricultural monocultures, and the destruction of insect native habitat, are all potential contributors to this grave situation. Some researchers are working towards a future where natural insect pollinators might be replaced with free-flying robotic bees, an ecologically problematic proposal. We argue instead that creating environments that are friendly to bees and exploring the use of other species for pollination and bio-control, particularly in non-European countries, are more ecologically sound approaches. The computer simulation of insect-plant interactions is a far more measured application of technology that may assist in managing, or averting, ‘Insect Armageddon' from both practical and ethical viewpoints.


Sensors ◽  
2021 ◽  
Vol 21 (2) ◽  
pp. 343
Author(s):  
Kim Bjerge ◽  
Jakob Bonde Nielsen ◽  
Martin Videbæk Sepstrup ◽  
Flemming Helsing-Nielsen ◽  
Toke Thomas Høye

Insect monitoring methods are typically very time-consuming and involve substantial investment in species identification following manual trapping in the field. Insect traps are often only serviced weekly, resulting in low temporal resolution of the monitoring data, which hampers the ecological interpretation. This paper presents a portable computer vision system capable of attracting and detecting live insects. More specifically, the paper proposes detection and classification of species by recording images of live individuals attracted to a light trap. An Automated Moth Trap (AMT) with multiple light sources and a camera was designed to attract and monitor live insects during twilight and night hours. A computer vision algorithm referred to as Moth Classification and Counting (MCC), based on deep learning analysis of the captured images, tracked and counted the number of insects and identified moth species. Observations over 48 nights resulted in the capture of more than 250,000 images with an average of 5675 images per night. A customized convolutional neural network was trained on 2000 labeled images of live moths represented by eight different classes, achieving a high validation F1-score of 0.93. The algorithm measured an average classification and tracking F1-score of 0.71 and a tracking detection rate of 0.79. Overall, the proposed computer vision system and algorithm showed promising results as a low-cost solution for non-destructive and automatic monitoring of moths.


Metabolites ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 134
Author(s):  
Marília Elias Gallon ◽  
Leonardo Gobbo-Neto

Balanced nutritional intake is essential to ensure that insects undergo adequate larval development and metamorphosis. Integrative multidisciplinary approaches have contributed valuable insights regarding the ecological and evolutionary outcomes of plant–insect interactions. To address the plant metabolites involved in the larval development of a specialist insect, we investigated the development of Chlosyne lacinia caterpillars fed on Heliantheae species (Tithonia diversifolia, Tridax procumbens and Aldama robusta) leaves and determined the chemical profile of plants and insects using a metabolomic approach. By means of LC-MS and GC-MS combined analyses, 51 metabolites were putatively identified in Heliantheae species and C. lacinia caterpillars and frass; these metabolites included flavonoids, sesquiterpene lactones, monoterpenoids, sesquiterpenoids, diterpenes, triterpenes, oxygenated terpene derivatives, steroids and lipid derivatives. The leading discriminant metabolites were diterpenes, which were detected only in A. robusta leaves and insects that were fed on this plant-based diet. Additionally, caterpillars fed on A. robusta leaves took longer to complete their development to the adult phase and exhibited a greater diapause rate. Hence, we hypothesized that diterpenes may be involved in the differential larval development. Our findings shed light on the plant metabolites that play roles in insect development and metabolism, opening new research avenues for integrative studies of insect nutritional ecology.


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