The use of shadows in high spatial resolution, remotely sensed, imagery to estimate the height of individual Eucalyptus trees on undulating land

2015 ◽  
Vol 37 (5) ◽  
pp. 467 ◽  
Author(s):  
Niva Kiran Verma ◽  
David W. Lamb

The shadows cast by 180 individual Eucalyptus trees, of varying canopy condition, on undulating land in south-eastern Australia were used to infer their heights from 50-cm spatial resolution, multispectral aerial imagery (blue = 0.4–0.5 μm; green = 0.5–0.6 μm; red = 0.6–0.7 μm; near infrared = 0.7–1 μm). A geometrical shadow model was developed incorporating the local slope and aspect of the ground from a digital elevation model at each tree location. A method of deriving ‘local tree time’ to infer the solar elevation angle, in situations where the image acquisition time is not available, was also developed. Based on a measurement of the shadow length from the geometric centre of the tree crowns, and ignoring the role of the crown periphery in distorting the shadow shape, the tree heights were estimated with a root mean square error of ±5.6 m (~±27%) with some overestimated by as much as 50%. A geometric correction for shadow distortion assuming spherical crown geometry provided an improved estimate with a root mean square error of ±4.8 m (~±23%).

2013 ◽  
Vol 807-809 ◽  
pp. 1967-1971
Author(s):  
Yan Bai ◽  
Xiao Yan Duan ◽  
Hai Yan Gong ◽  
Cai Xia Xie ◽  
Zhi Hong Chen ◽  
...  

In this paper, the content of forsythoside A and ethanol-extract were rapidly determinated by near-infrared reflectance spectroscopy (NIRS). 85 samples of Forsythiae Fructus harvested in Luoyang from July to September in 2012 were divided into a calibration set (75 samples) and a validation set (10 samples). In combination with the partical least square (PLS), the quantitative calibration models of forsythoside A and ethanol-extract were established. The correlation coefficient of cross-validation (R2) was 0.98247 and 0.97214 for forsythoside A and ethanol-extract, the root-mean-square error of calibration (RMSEC) was 0.184 and 0.570, the root-mean-square error of cross-validation (RMSECV) was 0.81736 and 0.36656. The validation set were used to evaluate the performance of the models, the root-mean-square error of prediction (RMSEP) was 0.221 and 0.518. The results indicated that it was feasible to determine the content of forsythoside A and ethanol-extract in Forsythiae Fructus by near-infrared spectroscopy.


2017 ◽  
Vol 71 (11) ◽  
pp. 2427-2436 ◽  
Author(s):  
Mi Lei ◽  
Long Chen ◽  
Bisheng Huang ◽  
Keli Chen

In this research paper, a fast, quantitative, analytical model for magnesium oxide (MgO) content in medicinal mineral talcum was explored based on near-infrared (NIR) spectroscopy. MgO content in each sample was determined by ethylenediaminetetraacetic acid (EDTA) titration and taken as reference value of NIR spectroscopy, and then a variety of processing methods of spectra data were compared to establish a good NIR spectroscopy model. To start, 50 batches of talcum samples were categorized into training set and test set using the Kennard–Stone (K-S) algorithm. In a partial least squares regression (PLSR) model, both leave-one-out cross-validation (LOOCV) and training set validation (TSV) were used to screen spectrum preprocessing methods from multiplicative scatter correction (MSC), and finally the standard normal variate transformation (SNV) was chosen as the optimal pretreatment method. The modeling spectrum bands and ranks were optimized using PLSR method, and the characteristic spectrum ranges were determined as 11995–10664, 7991–6661, and 4326–3999 cm−1, with four optimal ranks. In the support vector machine (SVM) model, the radical basis function (RBF) kernel function was used. Moreover, the full spectrum data of samples pretreated with SNV, the characteristic spectrum data screened using synergy interval partial least squares (SiPLS), and the scoring data of the first four ranks obtained by a partial least squares (PLS) dimension reduction of characteristic spectrum were taken as input variables of SVM, and the MgO content reference values of various sample were taken as output values. In addition, the SVM model internal parameters were optimized using the grid optimization method (GRID), particle swarm optimization (PSO), and genetic algorithm (GA) so that the optimal C and g-values were determined and the validation model was established. By comprehensively comparing the validation effects of different models, it can be concluded that the scoring data of the first four ranks obtained by PLS dimension reduction of characteristic spectrum were taken as input variables of SVM, and the PLS-SVM regression model established using GRID was the optimal NIR spectroscopy quantitative model of talc. This PLS-SVM regression model (rank = 4) measured that the MgO content of talcum was in the range of 17.42–33.22%, with root mean square error of cross validation (RMSECV) of 2.2127%, root mean square error of calibration (RMSEC) of 0.6057%, and root mean square error of prediction (RMSEP) of 1.2901%. This model showed high accuracy and strong prediction capacity, which can be used for rapid prediction of MgO content in talcum.


2013 ◽  
Vol 807-809 ◽  
pp. 1978-1983 ◽  
Author(s):  
Cai Xia Xie ◽  
Hai Yan Gong ◽  
Jian Ying Liu ◽  
Jing Wei Lei ◽  
Xiao Yan Duan ◽  
...  

To establish a rapid analytical method for Loganin in Qiju Dihuang Pills (condensed) by Near-infrared Diffuse Reflectance Technique. Collecting NIR spectra by NIR Diffuse Reflectance Spectroscopy, the partial least square calibration model was built. The correlation coefficients (R2) and the root-mean-square error of cross-validation (RMSECV) were 0.99764 and 0.09340, respectively. In the external validation,coefficients of determination (r2) between NIRS and HPLC values was 0.97348,the root-mean-square error of prediction (RMSEP) was 0.08491. The results showed that the method was rapid, accurate, and could be applied to the fast determination of Loganin in Qiju Dihuang Pills (condensed).


2010 ◽  
Vol 16 (2) ◽  
pp. 187-193 ◽  
Author(s):  
Yang Meiyan ◽  
Li Jing ◽  
Nie Shaoping ◽  
Hu Jielun ◽  
Yu Qiang ◽  
...  

Near-infrared spectroscopy (NIRS) was used as a rapid and nondestructive method to determine the content of docosahexaenoic acid (DHA) in powdered oil samples. A total of 82 samples were scanned in the diffuse reflectance mode by Nicolet 5700 FTIR spectrometer and the reference values for DHA was measured by gas chromatography. Calibration equations were developed using partial least-squares regression (PLS) with internal cross-validation. Samples were split in two sets, one set used as calibration (n = 66) whereas the remaining samples (n=16) were used as validation set. Two mathematical treatments (first and second derivative), none (log(1/R)) and standard normal variate as scatter corrections and Savitzky—Golay smoothing were explored. To decide upon the number of PLS factors included in the PLS model, the model with the lowest root mean square error of cross-validation (RMSECV=0.44) for the validation set is chosen. The correlation coefficient (r) between the predicted and the reference results which used as an evaluation parameter for the models is 0.968. The root mean square error of prediction of the final model is 0.59. The results reported in this article demonstrate that FT-NIR measurements can serve as a rapid method to determine DHA in powdered oil.


Food Research ◽  
2021 ◽  
Vol 5 (3) ◽  
pp. 273-280
Author(s):  
C.D.M. Ishkandar ◽  
N.M. Nawi ◽  
R. Janius ◽  
N. Mazlan ◽  
T.T. Lin

Pesticides have long been used in the cabbage industry to control pest infestation. This study investigated the potential application of low-cost and portable visible shortwave near-infrared spectroscopy for the detection of deltamethrin residue in cabbages. A total of sixty organic cabbage samples were used. The sample was divided into four batches, three batches were sprayed with deltamethrin pesticide whereas the remaining batch was not sprayed (control sample). The first three batches of the cabbages were sprayed with the pesticide at three different concentrations, namely low, medium and high with the values of 0.08, 0.11 and 0.14% volume/volume (v/v), respectively. Spectral data of the cabbage samples were collected using visible shortwave near-infrared (VSNIR) spectrometer with wavelengths range between 200 and 1100 nm. Gas chromatography-electron capture detector (GC-ECD) was used to determine the concentration of deltamethrin residues in the cabbages. Partial least square (PLS) regression method was adopted to investigate the relationship between the spectral data and deltamethrin concentration values. The calibration model produced the values of coefficient of determination (R2 ) and the root mean square error of calibration (RMSEC) of 0.98 and 0.02, respectively. For the prediction model, the values of R2 and the root mean square error of prediction (RMSEP) were 0.94 and 0.04, respectively. These results demonstrated that the proposed spectroscopic measurement is a promising technique for the detection of pesticide at different concentrations in cabbage samples.


Agronomy ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 2463
Author(s):  
Qing Dong ◽  
Qianqian Xu ◽  
Jiandong Wu ◽  
Beijiu Cheng ◽  
Haiyang Jiang

Near infrared reflectance spectroscopy (NIRS) and reference data were used to determine the amylose contents of single maize seeds to enable rapid, effective selection of individual seeds with desired traits. To predict the amylose contents of a single seed, a total of 1069 (865 as calibration set, 204 as validation set) single seeds representing 120 maize varieties were analyzed using chemical methods and performed calibration and external validation of the 150 single seeds set in parallel. Compared to various spectral pretreatments, the regression of partial least squares (PLS) with mathematical treatment of Harmonization showed the final optimization. The single-seed amylose contents showed the root mean square error of calibration (RMSEC) of 2.899, coefficient of determination for calibration (R2) of 0.902, and root mean square error of validation (RMSEV) of 2.948. In external validations, the coefficient of determination in cross-validation (r2), root mean square error of the prediction (RMSEP) and ratio of the standard deviation to SEP (RPD) were 0.892, 2.975 and 3.086 in the range of 20–30%, respectively. Therefore, NIRS will be helpful to breeders for determining the amylose contents of single-grain maize.


2020 ◽  
Vol 13 (02) ◽  
pp. 2050009
Author(s):  
Amorndej Puttipipatkajorn ◽  
Amornrit Puttipipatkajorn

Rubber sheets are one of the primary products of natural rubber and are the main raw material in various rubber industries. The quality of a rubber sheet can be visually examined by holding it against clear light to inspect for any specks and impurities inside, but its moisture content is difficult to evaluate based on a visual inspection and this might lead to unfair trading. Herein, we developed a rapid, robust and nondestructive near-infrared spectroscopy (NIRS)-based method for moisture content determination in rubber sheets. A set of 300 rubber sheets were divided into a calibration (200 samples) and prediction groups (100 samples). The calibration set was used to develop NIRS calibration equation using different calibration models, Partial Least Square Regression (PLSR), Least Square Support Vector Machine (LS-SVM) and Artificial Neural Network (ANN). Among the models investigated, the ANN model with the first derivative of spectral preprocessing presented the best prediction with a coefficient of determination ([Formula: see text] of 0.993, root mean square error of calibration (RMSEC) of 0.126% and root mean square error of prediction (RMSEP) of 0.179%. The results indicated that the proposed NIRS-ANN model will be able to reduce human error and provide a highly accurate estimate of the moisture content in a rubber sheet compared to traditional wet chemistry estimation methods according to AOAC standards.


Author(s):  
Yan Dong ◽  
Shi You Qu

Abstract Fourier transform near infrared (NIR) spectra combined with chemometric methods was proposed to the analysis of the crude protein and fat contents in whole-kernel soybean. The calibration models were established by partial least square. After optimizing spectral pre-treatment, the determination coefficient (R2) of the crude protein and fat were 0.971, 0.970, and root mean square error of calibration (RMSEC) were 0.610, 0.365,respectively. For the prediction samples of the crude protein and fat, root mean square error of prediction (RMSEP) were 0.766, 0.420, respectively. The analytical results showed that NIR spectra had significant potential as a rapid and nondestructive method for the crude protein and fat contents in soybean.


Planta Medica ◽  
2021 ◽  
Author(s):  
Sophia Mayr ◽  
Simon Strasser ◽  
Christian G. Kirchler ◽  
Florian Meischl ◽  
Stefan Stuppner ◽  
...  

AbstractThe content of the flavonolignan mixture silymarin and its individual components (silichristin, silidianin, silibinin A, silibinin B, isosilibinin A, and isosilibinin B) in whole and milled milk thistle seeds (Silybi mariani fructus) was analyzed with near-infrared spectroscopy. The analytical performance of one benchtop and two handheld near-infrared spectrometers was compared. Reference analysis was performed with HPLC following a Soxhlet extraction (European Pharmacopoeia) and a more resource-efficient ultrasonic extraction. The reliability of near-infrared spectral analysis determined through partial least squares regression models constructed independently for the spectral datasets obtained by the three spectrometers was as follows. The benchtop device NIRFlex N-500 performed the best both for milled and whole seeds with a root mean square error of CV between 0.01 and 0.17%. The handheld spectrometer MicroNIR 2200 as well as the microPHAZIR provided a similar performance (root mean square error of CV between 0.01 and 0.18% and between 0.01 and 0.23%, respectively). We carried out quantum chemical simulation of near-infrared spectra of silichristin, silidianin, silibinin, and isosilibinin for interpretation of the results of spectral analysis. This provided understanding of the absorption regions meaningful for the calibration. Further, it helped to better separate how the chemical and physical properties of the samples affect the analysis. While the study demonstrated that milling of samples slightly improves the performance, it was deemed to be critical only for the analysis carried out with the microPHAZIR. This study evidenced that rapid and nondestructive quantification of silymarin and individual flavonolignans is possible with miniaturized near-infrared spectroscopy in whole milk thistle seeds.


2017 ◽  
Vol 25 (5) ◽  
pp. 289-300 ◽  
Author(s):  
Chamathca PS Kuda-Malwathumullage ◽  
Gary W Small

The temperature sensitivity of underlying water absorption bands can lead to baseline artifacts or apparent spectral band shifts in near infrared spectra and can negatively impact multivariate calibration models used in quantitative analyses. To address this issue, efforts can be made to suppress the temperature-induced spectral variation or knowledge of the temperature can be used to adjust the calibration. To facilitate the latter approach, we explored the ability to estimate the aqueous temperature of the sample directly from the combination region of the near infrared spectrum. This temperature modeling strategy addresses applications in which it is difficult to obtain an accurate sample temperature with a conventional measurement probe. Temperature models were developed by use of partial least-squares regression combined with the discrete wavelet transform. Models were constructed from the 5000 to 4000 cm−1 region of near infrared spectra for pH 7.4 buffer solutions over the temperature range of 20.0–40.5℃. The long-term predictive ability of the models was assessed by use of 13 sets of prediction spectra collected over the course of 13 months, yielding values of the root mean square error of prediction ranging from 0.19 to 0.36℃. In addition, laboratory-prepared solutions of glucose, mixture solutions of glucose, lactate, urea in buffer, and bovine plasma were used to assess the predictive ability of the temperature models in increasingly complex matrixes. The effects of pH and buffer molarity were also studied. While increasing the complexity of the spectral background resulted in increases in root mean square error of prediction (0.33–1.01℃), retuning the models to incorporate the modified spectral backgrounds lowered the resulting root mean square error of prediction values to the range of 0.3℃. This work demonstrates the practical utility of spectral-based temperature measurements that employ the absorbance of the water baseline rather than the peak absorbance.


Sign in / Sign up

Export Citation Format

Share Document