scholarly journals Transcriptome sequencing and expression profiling of genes involved in daylily (Hemerocallis citrina Borani) flower development

2020 ◽  
Vol 34 (1) ◽  
pp. 542-548
Author(s):  
Huanhuan Yang ◽  
Yufeng Zhang ◽  
Xin Zhen ◽  
Donglin Guo ◽  
Changhong Guo ◽  
...  
Animals ◽  
2019 ◽  
Vol 9 (11) ◽  
pp. 873 ◽  
Author(s):  
Jun Cao ◽  
Xiuzhu Cheng

Cytochrome P450s (CYPs) are a family of membrane-bound mono-oxygenase proteins, which are involved in cell metabolism and detoxification of various xenobiotic substances. In this study, we identified 58 putative CYP genes in Amur stickleback (Pungitius sinensis) based on the transcriptome sequencing. Conserved motif distribution suggested their functional relevance within each group. Some present recombination events have accelerated the evolution of this gene family. Moreover, a few positive selection sites were identified, which may have accelerated the functional divergence of this family of proteins. Expression patterns of these CYP genes were investigated and indicated that most were affected by dimethoate treatment, suggesting that CYPs were involved in the detoxication of dimethoate. This study will provide a foundation for the further functional investigation of CYP genes in fishes.


BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 662 ◽  
Author(s):  
Yanjie Xu ◽  
Shan Gao ◽  
Yingjie Yang ◽  
Mingyun Huang ◽  
Lina Cheng ◽  
...  

Agronomy ◽  
2020 ◽  
Vol 10 (5) ◽  
pp. 653
Author(s):  
Mengyao Li ◽  
Shanshan Tan ◽  
Guofei Tan ◽  
Ya Luo ◽  
Bo Sun ◽  
...  

There are few reports on the reproductive biology of celery, which produces small flowers in a long flowering period. Anther development was analyzed by paraffin sectioning and related genes were examined by transcriptome sequencing and qPCR. The development process was divided into nine stages based on the significant changes in the cell and tissue morphologies. These stages included: archesporial stage, sporogenous cell stage, microspore mother cell stage, dyad and tetrad stage, mononuclear microspore stage, late uninucleate microspore stage, binuclear cell stage, mature pollen stage, and dehiscence stage. A total of 1074 differentially expressed genes were identified by transcriptome sequencing in the early flower bud, middle flower bud, and early flowering period. Functional annotation indicated that these genes were involved in physiological and biochemical processes such as ribosomes metabolism, sugar metabolism, and amino acid metabolism. Transcription factors such as C2H2, AP2/ERF, bZIP, WRKY, and MYB played key regulatory roles in anther development and had different regulatory capabilities at various stages. The expression patterns based on qPCR and transcriptome data of the selected transcription factor genes showed consistency, suggesting that these genes played an important role in different flower development stages. These results provide a theoretical basis for molecular breeding of new celery varieties with pollen abortion. Furthermore, they have enriched research on the reproductive biology of celery and the Apiaceae family.


PLoS ONE ◽  
2013 ◽  
Vol 8 (10) ◽  
pp. e76890 ◽  
Author(s):  
Xiao-Jiao Han ◽  
Yang-Dong Wang ◽  
Yi-Cun Chen ◽  
Li-Yuan Lin ◽  
Qing-Ke Wu

2015 ◽  
Vol 399 ◽  
pp. 311-320 ◽  
Author(s):  
Silvia Monticone ◽  
Tobias Else ◽  
Paolo Mulatero ◽  
Tracy A. Williams ◽  
William E. Rainey

Sign in / Sign up

Export Citation Format

Share Document