scholarly journals Ultrastructural, Cytochemical, and Comparative Genomic Evidence of Peroxisomes in Three Genera of Pathogenic Free-Living Amoebae, Including the First Morphological Data for the Presence of This Organelle in Heteroloboseans

2020 ◽  
Vol 12 (10) ◽  
pp. 1734-1750
Author(s):  
Arturo González-Robles ◽  
Mónica González-Lázaro ◽  
Anel Edith Lagunes-Guillén ◽  
Maritza Omaña-Molina ◽  
Luis Fernando Lares-Jiménez ◽  
...  
Keyword(s):  
Protein Import ◽  
Acanthamoeba Castellanii ◽  
Morphological Data ◽  
Comparative Genomic ◽  
Reaction Products ◽  
Free Living ◽  
Transmission Electron ◽  
Complete Set ◽  
Taxonomic Groups ◽  
Naegleria Lovaniensis

Abstract Peroxisomes perform various metabolic processes that are primarily related to the elimination of reactive oxygen species and oxidative lipid metabolism. These organelles are present in all major eukaryotic lineages, nevertheless, information regarding the presence of peroxisomes in opportunistic parasitic protozoa is scarce and in many cases it is still unknown whether these organisms have peroxisomes at all. Here, we performed ultrastructural, cytochemical, and bioinformatic studies to investigate the presence of peroxisomes in three genera of free-living amoebae from two different taxonomic groups that are known to cause fatal infections in humans. By transmission electron microscopy, round structures with a granular content limited by a single membrane were observed in Acanthamoeba castellanii, Acanthamoeba griffini, Acanthamoeba polyphaga, Acanthamoeba royreba, Balamuthia mandrillaris (Amoebozoa), and Naegleria fowleri (Heterolobosea). Further confirmation for the presence of peroxisomes was obtained by treating trophozoites in situ with diaminobenzidine and hydrogen peroxide, which showed positive reaction products for the presence of catalase. We then performed comparative genomic analyses to identify predicted peroxin homologues in these organisms. Our results demonstrate that a complete set of peroxins—which are essential for peroxisome biogenesis, proliferation, and protein import—are present in all of these amoebae. Likewise, our in silico analyses allowed us to identify a complete set of peroxins in Naegleria lovaniensis and three novel peroxin homologues in Naegleria gruberi. Thus, our results indicate that peroxisomes are present in these three genera of free-living amoebae and that they have a similar peroxin complement despite belonging to different evolutionary lineages.

scholarly journals Behavior of Yersinia enterocolitica in the Presence of the Bacterivorous Acanthamoeba castellanii

2013 ◽  
Vol 79 (20) ◽  
pp. 6407-6413 ◽  
Author(s):  
E. Lambrecht ◽  
J. Baré ◽  
I. Van Damme ◽  
W. Bert ◽  
K. Sabbe ◽  
...  
Keyword(s):  
Yersinia Enterocolitica ◽  
Pathogenic Bacteria ◽  
Acanthamoeba Castellanii ◽  
Ecological Niches ◽  
Free Living ◽  
Content Type ◽  
Food Borne ◽  
Transmission Electron ◽  
Set Up ◽  
The Impact

ABSTRACTFree-living protozoa play an important role in the ecology and epidemiology of human-pathogenic bacteria. In the present study, the interaction betweenYersinia enterocolitica, an important food-borne pathogen, and the free-living amoebaAcanthamoeba castellaniiwas studied. Several cocultivation assays were set up to assess the resistance ofY. enterocoliticatoA. castellaniipredation and the impact of environmental factors and bacterial strain-specific characteristics. Results showed that allY. enterocoliticastrains persist in association withA. castellaniifor at least 14 days, and associations withA. castellaniienhanced survival ofYersiniaunder nutrient-rich conditions at 25°C and under nutrient-poor conditions at 37°C. Amoebae cultivated in the supernatant of oneYersiniastrain showed temperature- and time-dependent permeabilization. Intraprotozoan survival ofY. enterocoliticadepended on nutrient availability and temperature, with up to 2.8 log CFU/ml bacteria displaying intracellular survival at 7°C for at least 4 days in nutrient-rich medium. Transmission electron microscopy was performed to locate theYersiniacells inside the amoebae. AsYersiniaandAcanthamoebashare similar ecological niches, this interaction identifies a role of free-living protozoa in the ecology and epidemiology ofY. enterocolitica.

scholarly journals Erratum to: Ultrastructural, Cytochemical, and Comparative Genomic Evidence of Peroxisomes in Three Genera of Pathogenic Free-Living Amoebae, Including the First Morphological Data for the Presence of This Organelle in Heteroloboseans

2021 ◽  
Vol 13 (8) ◽  
Author(s):  
Arturo González-Robles ◽  
Mónica González-Lázaro ◽  
Anel Edith Lagunes-Guillén ◽  
Maritza Omaña-Molina ◽  
Luis Fernando Lares-Jiménez ◽  
...  
Keyword(s):  
Morphological Data ◽  
Comparative Genomic ◽  
Free Living

Microtexture of shock reaction products of niobium and silica mixtures

1999 ◽  
Vol 14 (7) ◽  
pp. 3169-3174 ◽  
Author(s):  
Reiko Murao ◽  
Masae Kikuchi ◽  
Kiyoto Fukuoka ◽  
Eiji Aoyagi ◽  
Toshiyuki Atou ◽  
...  
Keyword(s):  
Electron Microscopy ◽  
Transmission Electron Microscopy ◽  
Electron Microscope ◽  
Shock Compression ◽  
Pressure Range ◽  
Reaction Products ◽  
Small Particles ◽  
Powder Mixtures ◽  
X Ray ◽  
Transmission Electron

Shock compression experiments on powder mixtures of niobium metal and quartz were conducted for the pressure range of 30–40 GPa by a 25-mm single-stage propellant gun. Chemical reaction occurred above 35 GPa, and products were found to be mainly so-called “Cu3Au-type” Nb3Si, which contained a small amount of oxygen. Microtextures of the specimen were examined by scanning and transmission electron microscopy. A field-emission transmission electron microscope was used for energy-dispersive x-ray analysis of microtextures in small particles found in the SiO2 matrix, and various species with different Nb/Si ratio and oxygen content were shown to be produced through the nonequilibrium process of shock compression.

Ultrastructures of Epibiotic Suctorian, Tokophrya huangmeiensis 

Zootaxa ◽  
2018 ◽  
Vol 4521 (1) ◽  
pp. 145
Author(s):  
URFA BIN TAHIR ◽  
DENG QIONG ◽  
WANG ZHE ◽  
LI SEN ◽  
LIU YANG ◽  
...  
Keyword(s):  
Electron Microscopy ◽  
Transmission Electron Microscopy ◽  
Light Microscopy ◽  
Structural Changes ◽  
Small Subunit ◽  
Free Living ◽  
Transmission Electron ◽  
Small Subunit Ribosomal Dna ◽  
Ribosomal Dna Sequence ◽  
Freshwater Ciliates

Tokophrya species are either free-living or facultative ectosymbiotic suctorians associated with copepods, isopods, mysids, decapods and amphipods. Tokophrya huangmeiensis in particular is found to be epizoic with the redclaw crayfish Cherax quadricarinatus Von Martens, 1868, which has been observed as part of an ongoing investigation of freshwater ciliates biodiversity in Huanggang, Hubei, China (Tahir et al. 2017). This first study on T. huangmeiensis based on morphological features using light microscopy and small subunit ribosomal DNA sequence (Tahir et al. 2017), suggested that more detailed descriptions on the physiological and structural changes of this species should be done. Thus, in this study, we looked at the ultrastructures of T. huangmeiensis using electron microscopy, including both scanning (SEM) and transmission electron microscopy (TEM). 

scholarly journals Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda)

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e2982 ◽  
Author(s):  
Mun Hua Tan ◽  
Han Ming Gan ◽  
Yin Peng Lee ◽  
Gary C.B. Poore ◽  
Christopher M. Austin
Keyword(s):  
Codon Usage ◽  
Gene Order ◽  
Phylogenetic Relationships ◽  
Decapod Crustacean ◽  
Illumina Miseq ◽  
Comparative Genomic ◽  
Decapod Crustaceans ◽  
Phylogenetic Studies ◽  
Significant Gene ◽  
Taxonomic Groups

BackgroundWhole mitochondrial DNA is being increasingly utilized for comparative genomic and phylogenetic studies at deep and shallow evolutionary levels for a range of taxonomic groups. Although mitogenome sequences are deposited at an increasing rate into public databases, their taxonomic representation is unequal across major taxonomic groups. In the case of decapod crustaceans, several infraorders, including Axiidea (ghost shrimps, sponge shrimps, and mud lobsters) and Caridea (true shrimps) are still under-represented, limiting comprehensive phylogenetic studies that utilize mitogenomic information.MethodsSequence reads from partial genome scans were generated using the Illumina MiSeq platform and mitogenome sequences were assembled from these low coverage reads. In addition to examining phylogenetic relationships within the three infraorders, Axiidea, Gebiidea, and Caridea, we also investigated the diversity and frequency of codon usage bias and mitogenome gene order rearrangements.ResultsWe present new mitogenome sequences for five shrimp species from Australia that includes two ghost shrimps,Callianassa ceramicaandTrypaea australiensis, along with three caridean shrimps,Macrobrachium bullatum,Alpheus lobidens, andCaridinacf.nilotica. Strong differences in codon usage were discovered among the three infraorders and significant gene order rearrangements were observed. While the gene order rearrangements are congruent with the inferred phylogenetic relationships and consistent with taxonomic classification, they are unevenly distributed within and among the three infraorders.DiscussionOur findings suggest potential for mitogenome rearrangements to be useful phylogenetic markers for decapod crustaceans and at the same time raise important questions concerning the drivers of mitogenome evolution in different decapod crustacean lineages.

scholarly journals What factors explain the geographical range of mammalian parasites?

2019 ◽  
Vol 286 (1903) ◽  
pp. 20190673 ◽  
Author(s):  
James E. Byers ◽  
J. P. Schmidt ◽  
Paula Pappalardo ◽  
Sarah E. Haas ◽  
Patrick R. Stephens
Keyword(s):  
Host Species ◽  
Parasite Species ◽  
Geographical Area ◽  
Complete Information ◽  
Sampling Effort ◽  
Free Living ◽  
Living Species ◽  
Habitat Breadth ◽  
Taxonomic Groups ◽  
Host Characteristics

Free-living species vary substantially in the extent of their spatial distributions. However, distributions of parasitic species have not been comprehensively compared in this context. We investigated which factors most influence the geographical extent of mammal parasites. Using the Global Mammal Parasite Database we analysed 17 818 individual geospatial records on 1806 parasite species (encompassing viruses, bacteria, protozoa, arthropods and helminths) that infect 396 carnivore, ungulate and primate host species. As a measure of the geographical extent of each parasite species we quantified the number and area of world ecoregions occupied by each. To evaluate the importance of variables influencing the summed area of ecoregions occupied by a parasite species, we used Bayesian network analysis of a subset ( n = 866) of the parasites in our database that had at least two host species and complete information on parasite traits. We found that parasites that covered more geographical area had a greater number of host species, higher average phylogenetic relatedness between host species and more sampling effort. Host and parasite taxonomic groups had weak and indirect effects on parasite ecoregion area; parasite transmission mode had virtually no effect. Mechanistically, a greater number of host species probably increases both the collective abundance and habitat breadth of hosts, providing more opportunities for a parasite to have an expansive range. Furthermore, even though mammals are one of the best-studied animal classes, the ecoregion area occupied by their parasites is strongly sensitive to sampling effort, implying mammal parasites are undersampled. Overall, our results support that parasite geographical extent is largely controlled by host characteristics, many of which are subsumed within host taxonomic identity.

scholarly journals Mitigation of Expression of Virulence Genes in Legionella pneumophila Internalized in the Free-Living Amoeba Willaertia magna C2c Maky

Pathogens ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 447 ◽  
Author(s):  
Rayane Mouh Mameri ◽  
Jacques Bodennec ◽  
Laurent Bezin ◽  
Sandrine Demanèche
Keyword(s):  
Gene Expression ◽  
Legionella Pneumophila ◽  
Virulence Genes ◽  
Natural Habitat ◽  
Acanthamoeba Castellanii ◽  
Severe Form ◽  
Aquatic Environments ◽  
Free Living ◽  
Intracellular Parasites ◽  
Free Living Amoeba

Legionella pneumophila is a human pathogen responsible for a severe form of pneumonia named Legionnaire disease. Its natural habitat is aquatic environments, being in a free state or intracellular parasites of free-living amoebae, such as Acanthamoeba castellanii. This pathogen is able to replicate within some amoebae. Willaertia magna C2c Maky, a non-pathogenic amoeba, was previously demonstrated to resist to L. pneumophila and even to be able to eliminate the L. pneumophila strains Philadelphia, Lens, and Paris. Here, we studied the induction of seven virulence genes of three L. pneumophila strains (Paris, Philadelphia, and Lens) within W. magna C2c Maky in comparison within A. castellanii and with the gene expression level of L. pneumophila strains alone used as controls. We defined a gene expression-based virulence index to compare easily and without bias the transcript levels in different conditions and demonstrated that W. magna C2c Maky did not increase the virulence of L. pneumophila strains in contrast to A. castellanii. These results confirmed the non-permissiveness of W. magna C2c Maky toward L. pneumophila strains.

Reaction products of organic dye molecules with acid-treated montmorillonite

Clay Minerals ◽  
1983 ◽  
Vol 18 (4) ◽  
pp. 447-458 ◽  
Author(s):  
R. Fahn ◽  
K. Fenderl
Keyword(s):  
Electron Microscopy ◽  
Amorphous Silica ◽  
Acid Treatment ◽  
Organic Dye ◽  
Dye Molecules ◽  
Reaction Products ◽  
Acid Attack ◽  
Colour Intensity ◽  
Transmission Electron ◽  
Octahedral Cations

AbstractDuring the reaction of solutions of the leuco dyes crystal violet lactone and N-benzoyl leuco methylene blue with acid-treated montmarillonite (as occurs with carbonless copying papers), most of the offered dye is intercalated within the interlayers of the montmorillonite structure remaining after acid attack. This phenomenon was demonstrated by XRD and also by high-resolution transmission electron microscopy. During acid treatment, octahedral cations are dissolved from exposed edges of the montmorillonite lamellae and amorphous silica builds up in these areas. As a result, the BET(N2) specific surface area increases from ∼60 m2/g to ∼300 m2/g and, consequently, the theoretical reactivity towards leuco dyes. Nevertheless, only small quantities of the dye molecules are adsorbed onto the amorphous silica. The excellent colour intensity and, in particular, the resistance to fading in the light of the montmorillonite dye complexes may be explained by the protected position of the dye molecules within the interlayers of the montmorillonite.

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