scholarly journals Multi-dimensional leaf phenotypes reflect root system genotype in grafted grapevine over the growing season

GigaScience ◽  
2021 ◽  
Vol 10 (12) ◽  
Author(s):  
Zachary N Harris ◽  
Mani Awale ◽  
Niyati Bhakta ◽  
Daniel H Chitwood ◽  
Anne Fennell ◽  
...  
Keyword(s):  
Root System ◽  
Experimental System ◽  
Growing Season ◽  
Plant Biology ◽  
Shoot System ◽  
Distinct Individual ◽  
Below Ground ◽  
Ground Effects ◽  
Horticultural Practice ◽  
Broad Understanding

Abstract Background Modern biological approaches generate volumes of multi-dimensional data, offering unprecedented opportunities to address biological questions previously beyond reach owing to small or subtle effects. A fundamental question in plant biology is the extent to which below-ground activity in the root system influences above-ground phenotypes expressed in the shoot system. Grafting, an ancient horticultural practice that fuses the root system of one individual (the rootstock) with the shoot system of a second, genetically distinct individual (the scion), is a powerful experimental system to understand below-ground effects on above-ground phenotypes. Previous studies on grafted grapevines have detected rootstock influence on scion phenotypes including physiology and berry chemistry. However, the extent of the rootstock's influence on leaves, the photosynthetic engines of the vine, and how those effects change over the course of a growing season, are still largely unknown. Results Here, we investigate associations between rootstock genotype and shoot system phenotypes using 5 multi-dimensional leaf phenotyping modalities measured in a common grafted scion: ionomics, metabolomics, transcriptomics, morphometrics, and physiology. Rootstock influence is ubiquitous but subtle across modalities, with the strongest signature of rootstock observed in the leaf ionome. Moreover, we find that the extent of rootstock influence on scion phenotypes and patterns of phenomic covariation are highly dynamic across the season. Conclusions These findings substantially expand previously identified patterns to demonstrate that rootstock influence on scion phenotypes is complex and dynamic and underscore that broad understanding necessitates volumes of multi-dimensional data previously unmet.

scholarly journals Root system influence on high dimensional leaf phenotypes over the grapevine growing season

2020 ◽  
Author(s):  
Zachary N. Harris ◽  
Laura L. Klein ◽  
Mani Awale ◽  
Joel F. Swift ◽  
Zoë Migicovsky ◽  
...  
Keyword(s):  
Root System ◽  
Growing Season ◽  
High Dimensional ◽  
List Type ◽  
Phenological Stage ◽  
Multi Scale ◽  
Experimental Systems ◽  
Shoot System ◽  
Scale Data ◽  
Broad Understanding

SummaryIn many perennial crops, grafting the root system of one individual to the shoot system of another individual has become an integral part of propagation performed at industrial scales to enhance pest, disease, and stress tolerance and to regulate yield and vigor. Grafted plants offer important experimental systems for understanding the extent and seasonality of root system effects on shoot system biology.Using an experimental vineyard where a common scion ‘Chambourcin’ is growing ungrafted and grafted to three different rootstocks, we explore associations between root system genotype and leaf phenotypes in grafted grapevines across a growing season. We quantified five high-dimensional leaf phenotyping modalities: ionomics, metabolomics, transcriptomics, morphometrics, and physiology and show that rootstock influence is subtle but ubiquitous across modalities.We find strong signatures of rootstock influence on the leaf ionome, with unique signatures detected at each phenological stage. Moreover, all phenotypes and patterns of phenotypic covariation were highly dynamic across the season.These findings expand upon previously identified patterns to suggest that the influence of root system on shoot system phenotypes is complex and broad understanding necessitates volumes of high-dimensional, multi-scale data previously unmet.

scholarly journals Grapevine microbiota reflect diversity among compartments and complex interactions within and among root and shoot systems

2020 ◽  
Author(s):  
Joel F. Swift ◽  
Megan E. Hall ◽  
Zachary N. Harris ◽  
Misha T. Kwasniewski ◽  
Allison J. Miller
Keyword(s):  
Root System ◽  
Structural Characteristics ◽  
Irrigation Treatment ◽  
Individual Plant ◽  
Sour Rot ◽  
Complex Interactions ◽  
Shoot System ◽  
Distinct Individual ◽  
Bunch Rot ◽  
Rot Disease

AbstractBackgroundWithin an individual plant, different compartments (e.g. roots, leaves, fruits) host distinct communities of microorganisms due to variation in structural characteristics and resource availability. Grafting, which joins the root system of one individual with the shoot system of a second genetically distinct individual, has the potential to bring the microbial communities of different genotypes together. An important question is the extent to which unique root system and shoot system genotypes, when grafted together, influence the microbiota of the graft partner. Our study sought to answer this question by utilizing an experimental vineyard composed of ‘Chambourcin’ vines growing ungrafted and grafted to three different rootstocks, replicated across three irrigation treatments. We characterized bacterial and fungal communities in roots, leaves, and berries, as well as surrounding soil. Our objectives were to (1) characterize the microbiota of compartments within the root system (roots and adjacent soil) and the shoot system (leaves and berries), (2) determine the influence of rootstock genotypes, irrigation, and their interaction on the microbiota of aboveground and belowground compartments, and (3) investigate the distribution of microorganisms implicated in the late-season grapevine bunch rot disease sour rot (Acetobacterales and Saccharomycetes).ResultsCompartments were significantly differentiated in bacterial and fungal richness and composition. Abundance-based machine learning accurately predicted the compartment and differential abundance analysis showed a large portion of taxa differed significantly across compartments. Rootstock genotypes did not differ significantly in microbial community richness or composition; however, individual microbial taxa exhibited significant differences in abundance based on rootstock and irrigation treatment. The relative abundance of Acetobacterales and Saccharomycetes in the berry was influenced by complex interactions among rootstock genotype and irrigation.ConclusionOur results indicate that grapevine compartments retain distinct core microbiota regardless of the rootstock to which they are grafted. While rootstock genotype generally had a subtle impact on global patterns of microbial diversity, we found associations between rootstock genotypes and specific groups of microorganisms. Further experimental validation is needed in order to understand how associations with these microorganisms impacts a vine’s susceptibility to sour rot upon damage and whether the characteristics of wine are impacted.

scholarly journals Effect of thinning intensity on understory herbaceous diversity and biomass in mixed coniferous and broad-leaved forests of Changbai Mountain

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Gerong Wang ◽  
Yue Sun ◽  
Mo Zhou ◽  
Naiqian Guan ◽  
Yuwen Wang ◽  
...  
Keyword(s):  
Seasonal Changes ◽  
Mixed Forest ◽  
Growing Season ◽  
Total Biomass ◽  
Herb Layer ◽  
Simpson Index ◽  
Thinning Intensity ◽  
Ground Biomass ◽  
Below Ground ◽  
Understory Herb

Abstract Background Herbs are an important part of the forest ecosystem, and their diversity and biomass can reflect the restoration of vegetation after forest thinning disturbances. Based on the near-mature secondary coniferous and broad-leaved mixed forest in Jilin Province Forestry Experimental Zone, this study analyzed seasonal changes of species diversity and biomass of the understory herb layer after different intensities of thinning. Results The results showed that although the composition of herbaceous species and the ranking of importance values were affected by thinning intensity, they were mainly determined by seasonal changes. Across the entire growing season, the species with the highest importance values in thinning treatments included Carex pilosa, Aegopodium alpestre, Meehania urticifolia, and Filipendula palmata, which dominated the herb layer of the coniferous and broad-leaved mixed forest. The number of species, Margalef index, Shannon-Wiener index and Simpson index all had their highest values in May, and gradually decreased with months. Pielou index was roughly inverted “N” throughout the growing season. Thinning did not increase the species diversity. Thinning can promote the total biomass, above- and below-ground biomass. The number of plants per unit area and coverage were related to the total biomass, above- and below-ground biomass. The average height had a significantly positive correlation with herb biomass in May but not in July. However, it exerted a significantly negative correlation with herb biomass in September. The biomass in the same month increased with increasing thinning intensity. Total herb biomass, above- and below-ground biomass showed positive correlations with Shannon-Winner index, Simpson index and Pielou evenness index in May. Conclusions Thinning mainly changed the light environment in the forest, which would improve the plant diversity and biomass of herb layer in a short time. And different thinning intensity had different effects on the diversity of understory herb layer. The findings provide theoretical basis and reference for reasonable thinning and tending in coniferous and broad-leaved mixed forests.

Extension and Longitudinal Growth During the Development of Red Pine Root Systems

1975 ◽  
Vol 5 (1) ◽  
pp. 109-121 ◽  
Author(s):  
D. C. F. Fayle
Keyword(s):  
Root System ◽  
Root Systems ◽  
Red Pine ◽  
Longitudinal Growth ◽  
Rooting Depth ◽  
Soil Conditions ◽  
Moisture Availability ◽  
Below Ground

Extension of the root system and stem during the first 30 years of growth of plantation-grown red pine (Pinusresinosa Ait.) on four sites was deduced by root and stem analyses. Maximum rooting depth was reached in the first decade and maximum horizontal extension of roots was virtually complete between years 15 and 20. The main horizontal roots of red pine seldom exceed 11 m in length. Elongation of vertical and horizontal roots was examined in relation to moisture availability and some physical soil conditions. The changing relations within the tree in lineal dimensions and annual elongation of the roots and stem are illustrated. The development of intertree competition above and below ground is considered.

scholarly journals Interannual Variation in Root Production in Grasslands Affected by Artificially Modified Amount of Rainfall

2012 ◽  
Vol 2012 ◽  
pp. 1-10 ◽  
Author(s):  
Karel Fiala ◽  
Ivan Tůma ◽  
Petr Holub
Keyword(s):  
Interannual Variation ◽  
Plant Biomass ◽  
Growing Season ◽  
Lower Amount ◽  
Root Production ◽  
Climate Scenarios ◽  
Natural Rainfall ◽  
Plant Matter ◽  
Grassland Ecosystems ◽  
Below Ground

The effect of different amounts of rainfall on the below-ground plant biomass was studied in three grassland ecosystems. Responses of the lowland (dryFestucagrassland), highland (wetCirsiumgrassland), and mountain (Nardusgrassland) grasslands were studied during five years (2006–2010). A field experiment based on rainout shelters and gravity irrigation simulated three climate scenarios: rainfall reduced by 50% (dry), rainfall increased by 50% (wet), and the natural rainfall of the current growing season (ambient). The interannual variation in root increment and total below-ground biomass reflected the experimentally manipulated amount of precipitation and also the amount of current rainfall of individual years. The effect of year on these below-ground parameters was found significant in all studied grasslands. In comparison with dryFestucagrassland, better adapted to drought, submontane wetCirsiumgrassland was more sensitive to the different water inputs forming rather lower amount of below-ground plant matter at reduced precipitation.

scholarly journals Bioremediation of Nickel and Lead contaminated soil by Vica faba L. plant and AM fungi Glomus mosseae

2015 ◽  
Vol 12 (2) ◽  
pp. 260-265
Author(s):  
Baghdad Science Journal
Keyword(s):  
Root System ◽  
Soil Pollution ◽  
Contaminated Soil ◽  
Glomus Mosseae ◽  
Arbuscular Mycorrhizae ◽  
Am Fungi ◽  
Polluted Soil ◽  
The South ◽  
Shoot System ◽  
North And South

This study is conducted to determine the activity of plant Vica faba and two isolated from arbuscular mycorrhizae fungi (A,B) in bioremediation of soil pollution by Nickel and Lead elements in north and south of Baghdad city. The results showed that the average of soil pollution by Nickel and Lead elements in north of Baghdad was less than the average of soil pollution in the south of Baghdad which recorded 29.0,9.0PPm and 42.0, 25.0PPm respectively. The results show that the isolate A from the polluted soil is more active from isolate B which isolate from unpolluted soil for bioremediation. Vica faba recorded more in accumulate the Lead element in shoot system which was 19.65PPm and in root system was 27.2PPm and for Nickel element 24.65, 27.55PPm in shoot and root respectively.

Stature of dependent forbs is more related to the direct and indirect above‐ and below‐ground effects of a subalpine shrub than are foliage traits

2019 ◽  
Vol 30 (3) ◽  
pp. 403-412 ◽  
Author(s):  
Xiangtai Wang ◽  
Richard Michalet ◽  
Ziyang Liu ◽  
Aifeng Guo ◽  
Xianhui Zhou ◽  
...  
Keyword(s):  
Below Ground ◽  
Ground Effects

scholarly journals Seasonal/Interannual Variations of Carbon Sequestration and Carbon Emission in a Warm-Season Perennial Grassland

2014 ◽  
Vol 2014 ◽  
pp. 1-13
Author(s):  
Deepa Dhital ◽  
Tomoharu Inoue ◽  
Hiroshi Koizumi
Keyword(s):  
Carbon Sequestration ◽  
Soil Carbon ◽  
Carbon Emission ◽  
Warm Season ◽  
Growing Season ◽  
Interannual Variations ◽  
Root Carbon ◽  
Ground Biomass ◽  
Below Ground ◽  
Perennial Grassland

Carbon sequestration and carbon emission are processes of ecosystem carbon cycling that can be affected while land area converted to grassland resulting in increased soil carbon storage and below-ground respiration. Discerning the importance of carbon cycle in grassland, we aimed to estimate carbon sequestration in photosynthesis and carbon emission in respiration from soil, root, and microbes, for four consecutive years (2007–2010) in a warm-season perennial grassland, Japan. Soil carbon emission increased with increasing growing season temperature which ranged from 438 to 1642 mg CO2 m−2 h−1. Four years’ average soil carbon emission for growing season, nongrowing season, and annual emission was 1123, 364, and 1488 g C m−2, respectively. Nongrowing and snow covered season soil carbon emission contributed 23–25% and 14–17% to the annual emission. Above-ground biomass varied seasonally and variation in green biomass affected soil carbon emission with increasing temperature and precipitation. Temperature effect on root carbon emission contributed about 1/4th of the total soil carbon emission. Variation in soil and root carbon emission is affected by below-ground biomass. Long-term estimation concluded that seasonal and interannual variations in carbon sequestration and emission are very common in grassland ecosystem.

scholarly journals Root biomass of beech as a factor influencing the wind tree stability 

2019 ◽  
Vol 48 (No. 12) ◽  
pp. 549-564 ◽  
Author(s):  
J. Kodrík ◽  
M. Kodrík
Keyword(s):  
Root System ◽  
Groundwater Level ◽  
Negative Impact ◽  
Lateral Roots ◽  
Root Systems ◽  
Static Stability ◽  
Soil Conditions ◽  
Tree Stability ◽  
Ground Biomass ◽  
Below Ground

Beech is, thanks to its root system, in general considered to be a wind-resistant woody plant species. Nevertheless, the research on beech root systems has revealed that it is not possible to mechanically divide the woody plants into deep rooted and shallow rooted, because their root systems are modified according to various stand conditions. The root system shape, growth and development are mostly influenced by soil conditions and groundwater level. In the case of a high groundwater level beech root systems do not form tap roots and the lateral roots are rather thin and weak. Important factor for the tree static stability is number of roots with diameter 3–10 cm. The most important for the tree stability are roots with diameter over 10 cm. Wood-destroying fungi have strong negative impact on tree static stability. There are differences between beech below-ground biomass growing in soils rich in nutrients and poor in nutrients. The total below-ground biomass of the beech stands poor in nutrients is higher.

scholarly journals Dissecting the effects of nitrate, sucrose and osmotic potential on Arabidopsis root and shoot system growth in laboratory assays

2012 ◽  
Vol 367 (1595) ◽  
pp. 1489-1500 ◽  
Author(s):  
Peter Roycewicz ◽  
Jocelyn E. Malamy
Keyword(s):  
Root System ◽  
Osmotic Potential ◽  
Wide Spectrum ◽  
System Size ◽  
Growth Media ◽  
Target Tissue ◽  
Shoot Ratio ◽  
Root Shoot Ratio ◽  
Shoot System ◽  
The Impact

Studying the specific effects of water and nutrients on plant development is difficult because changes in a single component can often trigger multiple response pathways. Such confounding issues are prevalent in commonly used laboratory assays. For example, increasing the nitrate concentration in growth media alters both nitrate availability and osmotic potential. In addition, it was recently shown that a change in the osmotic potential of media alters the plant's ability to take up other nutrients such as sucrose. It can also be difficult to identify the initial target tissue of a particular environmental cue because there are correlated changes in development of many organs. These growth changes may be coordinately regulated, or changes in development of one organ may trigger changes in development of another organ as a secondary effect. All these complexities make analyses of plant responses to environmental factors difficult to interpret. Here, we review the literature on the effects of nitrate, sucrose and water availability on root system growth and discuss the mechanisms underlying these effects. We then present experiments that examine the impact of nitrate, sucrose and water on root and shoot system growth in culture using an approach that holds all variables constant except the one under analysis. We found that while all three factors also alter root system size, changes in sucrose and osmotic potential also altered shoot system size. In contrast, we found that, when osmotic effects are controlled, nitrate specifically inhibits root system growth while having no effect on shoot system growth. This effectively decreases the root : shoot ratio. Alterations in root : shoot ratio have been widely observed in response to nitrogen starvation, where root growth is selectively increased, but the present results suggest that alterations in this ratio can be triggered across a wide spectrum of nitrate concentrations.

Sign in / Sign up

Export Citation Format

Share Document