scholarly journals Evidence for population structuring of blue whiting (Micromesistius poutassou) in the Northeast Atlantic

2008 ◽  
Vol 65 (2) ◽  
pp. 216-225 ◽  
Author(s):  
Anna Was ◽  
Elizabeth Gosling ◽  
Karen McCrann ◽  
Jarle Mork
Keyword(s):  
Gene Flow ◽  
Isolation By Distance ◽  
Large Population ◽  
Ne Atlantic ◽  
High Fecundity ◽  
Northeast Atlantic ◽  
Blue Whiting ◽  
Fish Spawning ◽  
Ne Atlantic Ocean ◽  
Population Structuring

Abstract Was, A., Gosling, E., McCrann, K., and Mork, J. 2008. Evidence for population structuring of blue whiting (Micromesistius poutassou) in the Northeast Atlantic. – ICES Journal of Marine Science, 65: 216–225. Many marine fish species are characterized by large population sizes, strong migratory behaviour, high fecundity, and pelagic eggs and larvae that are subject to passive transport by ocean currents, all factors that tend to reduce the rate of development of genetic partitioning among localized populations. The blue whiting (Micromesistius poutassou) is a commercially important gadoid that exhibits all these characteristics, although to date there has been little evidence of genetic heterogeneity except at the latitudinal extremes of its range in the NE Atlantic. Genetic variation was analysed at five microsatellite loci in 16 samples, 14 comprising spawning adults, collected along the continental shelf from 44°N to 60°N, a distance of ∼1900 km. Although pairwise FST values were low (0.0–0.040; mean 0.0097), more than 40% of the estimates were significant, with Celtic Sea and Bay of Biscay samples significantly differentiated from samples from the Porcupine Bank, Hebridean Shelf, Sulisker Bank, and Papa Bank. There was also significant differentiation between samples taken in different years on Rockall Bank. Mantel tests revealed no significant isolation by distance. We used a landscape genetics approach, which combines spatial and genetic information, to detect barriers to gene flow. Four zones of lowered gene flow were identified, generally in concordance with hydrographic patterns, fish spawning behaviour, and the simulated transport of larvae in the NE Atlantic Ocean.

Population fragmentation causes inadequate gene flow and increases extinction risk

2017 ◽  
Author(s):  
Richard Frankham ◽  
Jonathan D. Ballou ◽  
Katherine Ralls ◽  
Mark D. B. Eldridge ◽  
Michele R. Dudash ◽  
...  
Keyword(s):  
Gene Flow ◽  
Extinction Risk ◽  
Random Mating ◽  
Large Population ◽  
Isolated Population ◽  
Population Fragmentation ◽  
Single Population ◽  
Total Size ◽  
Limited Gene Flow

Most species now have fragmented distributions, often with adverse genetic consequences. The genetic impacts of population fragmentation depend critically upon gene flow among fragments and their effective sizes. Fragmentation with cessation of gene flow is highly harmful in the long term, leading to greater inbreeding, increased loss of genetic diversity, decreased likelihood of evolutionary adaptation and elevated extinction risk, when compared to a single population of the same total size. The consequences of fragmentation with limited gene flow typically lie between those for a large population with random mating and isolated population fragments with no gene flow.

scholarly journals Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao People’s Democratic Republic

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Maysa Tiemi Motoki ◽  
Dina Madera Fonseca ◽  
Elliott Frederic Miot ◽  
Bruna Demari-Silva ◽  
Phoutmany Thammavong ◽  
...  
Keyword(s):  
Population Structure ◽  
Gene Flow ◽  
Aedes Albopictus ◽  
Isolation By Distance ◽  
Genetic Locus ◽  
Lao Pdr ◽  
Phylogenetic Network ◽  
Population Expansion ◽  
Recent Population Expansion ◽  
The Usa

Abstract Background The Asian tiger mosquito, Aedes (Stegomyia) albopictus (Skuse) is an important worldwide invasive species and can be a locally important vector of chikungunya, dengue and, potentially, Zika. This species is native to Southeast Asia where populations thrive in both temperate and tropical climates. A better understanding of the population structure of Ae. albopictus in Lao PDR is very important in order to support the implementation of strategies for diseases prevention and vector control. In the present study, we investigated the genetic variability of Ae. albopictus across a north-south transect in Lao PDR. Methods We used variability in a 1337-bp fragment of the mitochondrial cytochrome c oxidase subunit 1 gene (cox1), to assess the population structure of Ae. albopictus in Lao PDR. For context, we also examined variability at the same genetic locus in samples of Ae. albopictus from Thailand, China, Taiwan, Japan, Singapore, Italy and the USA. Results We observed very high levels of genetic polymorphism with 46 novel haplotypes in Ae. albopictus from 9 localities in Lao PDR and Thailand populations. Significant differences were observed between the Luangnamtha population and other locations in Lao PDR. However, we found no evidence of isolation by distance. There was overall little genetic structure indicating ongoing and frequent gene flow among populations or a recent population expansion. Indeed, the neutrality test supported population expansion in Laotian Ae. albopictus and mismatch distribution analyses showed a lack of low frequency alleles, a pattern often seen in bottlenecked populations. When samples from Lao PDR were analyzed together with samples from Thailand, China, Taiwan, Japan, Singapore, Italy and the USA, phylogenetic network and Bayesian cluster analysis showed that most populations from tropical/subtropical regions are more genetically related to each other, than populations from temperate regions. Similarly, most populations from temperate regions are more genetically related to each other, than those from tropical/subtropical regions. Conclusions Aedes albopictus in Lao PDR are genetically related to populations from tropical/subtropical regions (i.e. Thailand, Singapore, and California and Texas in the USA). The extensive gene flow among locations in Lao PDR indicates that local control is undermined by repeated introductions from untreated sites.

scholarly journals Kilometre-scale polygonal seabed depressions in the Hatton Basin, NE Atlantic Ocean: Constraints on the origin of polygonal faulting

2012 ◽  
Vol 332-334 ◽  
pp. 126-133 ◽  
Author(s):  
Christian Berndt ◽  
Colin Jacobs ◽  
Alan Evans ◽  
Aurélien Gay ◽  
Gavin Elliott ◽  
...  
Keyword(s):  
Atlantic Ocean ◽  
Ne Atlantic ◽  
Ne Atlantic Ocean

scholarly journals Spatial population genomics of a recent mosquito invasion

2020 ◽  
Author(s):  
Thomas L Schmidt ◽  
T. Swan ◽  
Jessica Chung ◽  
Stephan Karl ◽  
Samuel Demok ◽  
...  
Keyword(s):  
Gene Flow ◽  
Population Genomics ◽  
Isolation By Distance ◽  
Spatial Genetic Structure ◽  
Nucleotide Polymorphisms ◽  
Discrete Events ◽  
Long Distance ◽  
Population Genomic ◽  
Asian Tiger ◽  
Study Designs

AbstractPopulation genomic approaches can characterise dispersal across a single generation through to many generations in the past, bridging the gap between individual movement and intergenerational gene flow. These approaches are particularly useful when investigating dispersal in recently altered systems, where they provide a way of inferring long-distance dispersal between newly established populations and their interactions with existing populations. Human-mediated biological invasions represent such altered systems which can be investigated with appropriate study designs and analyses. Here we apply temporally-restricted sampling and a range of population genomic approaches to investigate dispersal in a 2004 invasion of Aedes albopictus (the Asian tiger mosquito) in the Torres Strait Islands (TSI) of Australia. We sampled mosquitoes from 13 TSI villages simultaneously and genotyped 373 mosquitoes at genome-wide single nucleotide polymorphisms (SNPs): 331 from the TSI, 36 from Papua New Guinea (PNG), and 4 incursive mosquitoes detected in uninvaded regions. Within villages, spatial genetic structure varied substantially but overall displayed isolation by distance and a neighbourhood size of 232–577. Close kin dyads revealed recent movement between islands 31–203 km apart, and deep learning inferences showed incursive Ae. albopictus had travelled to uninvaded regions from both adjacent and non-adjacent islands. Private alleles and a coancestry matrix indicated direct gene flow from PNG into nearby islands. Outlier analyses also detected four linked alleles introgressed from PNG, with the alleles surrounding 12 resistance-associated cytochrome P450 genes. By treating dispersal as both an intergenerational process and a set of discrete events, we describe a highly interconnected invasive system.

scholarly journals Range reduction of the Oblong Rocksnail, Leptoxis compacta, shapes riverscape genetic patterns

2020 ◽  
Author(s):  
Aaliyah D. Wright ◽  
Nicole L. Garrison ◽  
Ashantye’ S. Williams ◽  
Paul D. Johnson ◽  
Nathan V. Whelan
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Human Impacts ◽  
Isolation By Distance ◽  
Extinction Risk ◽  
River System ◽  
High Genetic Diversity ◽  
Range Contraction ◽  
Genetic Patterns ◽  
Cahaba River

AbstractMany freshwater gastropod species face extinction, including 79% of species in the family Pleuroceridae. The Oblong Rocksnail, Leptoxis compacta, is a narrow range endemic pleurocerid from the Cahaba River basin in central Alabama that has seen rapid range contraction in the last 100 years. Such a decline is expected to negatively affect genetic diversity in the species. However, precise patterns of genetic variation and gene flow across the restricted range of L. compacta are unknown. This lack of information limits our understanding of human impacts on the Cahaba River system and Pleuroceridae. Here, we show that L. compacta has likely seen a species-wide decline in genetic diversity, but remaining populations have relatively high genetic diversity. We also report a contemporary range extension compared to the last published survey. Leptoxis compacta does not display an isolation by distance pattern, contrasting patterns seen in many riverine taxa. Our findings also indicate that historical range contraction has resulted in the absence of common genetic patterns seen in many riverine taxa like isolation by distance as the small distribution of L. compacta allows for relatively unrestricted gene flow across its remaining range despite limited dispersal abilities. Two collection sites had higher genetic diversity than others, and broodstock sites for future captive propagation and reintroduction efforts should utilize sites identified here as having the highest genetic diversity. Broadly, our results support the hypothesis that range contraction will result in the reduction of species-wide genetic diversity, and common riverscape genetic patterns cannot be assumed to be present in species facing extinction risk.

scholarly journals A new species of Ampharete (Annelida: Ampharetidae) from the West Shetland shelf (NE Atlantic Ocean), with two updated keys to the species of the genus in North Atlantic waters

2019 ◽  
Author(s):  
Julio Parapar ◽  
Juan MOREIRA ◽  
Ruth BARNICH
Keyword(s):  
North Atlantic ◽  
Small Body ◽  
New Taxon ◽  
Ne Atlantic ◽  
The West ◽  
The North ◽  
Joint Nature Conservation Committee ◽  
Ne Atlantic Ocean ◽  
Micro Morphology ◽  
A New Species

Ampharete oculicirrata sp. nov. (Annelida: Ampharetidae) is described from samples collected by the Joint Nature Conservation Committee and Marine Scotland Science, in the West Shetland Shelf NCMPA in the NE Atlantic. This species is characterised by a very small body size, thin and slender paleae, twelve thoracic and eleven abdominal uncinigers, presence of eyes both in the prostomium and the pygidium, the latter provided with a pair of long lateral cirri. The external micro-morphology of the new taxon was studied using scanning electron microscopy and compared with species described or reported from the North Atlantic. Two complementary keys to all species of Ampharete in the area are also provided.

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