scholarly journals Human Respiratory Syncytial Virus-Induced Immune Signature of Infection Revealed by Transcriptome Analysis of Clinical Pediatric Nasopharyngeal Swab Samples

Author(s):  
Claire Nicolas De Lamballerie ◽  
Andrés Pizzorno ◽  
Julia Dubois ◽  
Blandine Padey ◽  
Thomas Julien ◽  
...  

Abstract Human respiratory syncytial virus (HRSV) constitutes one the main causes of respiratory infection in neonates and infants worldwide. Transcriptome analysis of clinical samples using high-throughput technologies remains an important tool to better understand virus-host complex interactions in the real-life setting but also to identify new diagnosis/prognosis markers or therapeutics targets. A major challenge when exploiting clinical samples such as nasal swabs, washes, or bronchoalveolar lavages is the poor quantity and integrity of nucleic acids. In this study, we applied a tailored transcriptomics workflow to exploit nasal wash samples from children who tested positive for HRSV. Our analysis revealed a characteristic immune signature as a direct reflection of HRSV pathogenesis and highlighted putative biomarkers of interest such as IP-10, TMEM190, MCEMP1, and TIMM23.

2020 ◽  
Author(s):  
Claire Nicolas De Lamballerie ◽  
Andrés Pizzorno ◽  
Julia Dubois ◽  
Blandine Padey ◽  
Thomas Julien ◽  
...  

AbstractHuman Respiratory Syncytial Virus (HRSV) constitutes one the main causes of respiratory infection in neonates and infants worldwide. Transcriptome analysis of clinical samples using high-throughput technologies remains an important tool to better understand virus-host complex interactions in the real-life setting but also to identify new diagnosis/prognosis markers or therapeutics targets. A major challenge when exploiting clinical samples such as nasal swabs, washes or bronchoalveolar lavages is the poor quantity and integrity of nucleic acids. In this study, we applied a tailored transcriptomics workflow to exploit nasal wash samples from children who tested positive for HRSV. Our analysis revealed a characteristic immune signature as a direct reflection of HRSV pathogenesis and highlighted putative biomarkers of interest.


Medicina ◽  
2019 ◽  
Vol 55 (5) ◽  
pp. 169 ◽  
Author(s):  
Daifullah Al Aboud ◽  
Nora M. Al Aboud ◽  
Mater I. R. Al-Malky ◽  
Ahmed S. Abdel-Moneim

Background and objectives: The human respiratory syncytial virus (hRSV) is among the important respiratory pathogens affecting children. Genotype-specific attachment (G) gene sequencing is usually used to determine the virus genotype. The reliability of the fusion (F) gene vs. G gene genotype-specific sequencing was screened. Materials and Methods: Archival RNA from Saudi children who tested positive for hRSV-A were used. Samples were subjected to a conventional one-step RT-PCR for both F and G genes and direct gene sequencing of the amplicons using the same primer sets. Phylogeny and mutational analysis of the obtained sequences were conducted. Results: The generic primer set succeeded to amplify target gene sequences. The phylogenetic tree based on partial F gene sequencing resulted in an efficient genotyping of hRSV-A strains equivalent to the partial G gene genotyping method. NA1, ON1, and GA5 genotypes were detected in the clinical samples. The latter was detected for the first time in Saudi Arabia. Different mutations in both conserved and escape-mutant domains were detected in both F and G. Conclusion: It was concluded that a partial F gene sequence can be used efficiently for hRSV-A genotyping.


2016 ◽  
Vol 4 (1) ◽  
Author(s):  
J. E. Muñoz-Medina ◽  
I. E. Monroy-Muñoz ◽  
A. Santos Coy-Arechavaleta ◽  
A. Meza-Chávez ◽  
J. Ángeles-Martínez ◽  
...  

Human respiratory syncytial virus (HRSV) is a member of the Paramyxoviridae family, which causes lower respiratory tract infections in neonates and children younger than 5 years. Here, we report the complete genome sequence of HRSV, isolated from a nasopharyngeal swab of a pregnant woman with cardiac complications.


2006 ◽  
Vol 58 (6) ◽  
pp. 973-981 ◽  
Author(s):  
R.S. Almeida ◽  
F.R. Spilki ◽  
P.M. Roehe ◽  
L.M.C. Verinaud ◽  
C.W. Arns

An immunoistochemical (IHC) test was developed to detect bovine respiratory syncytial virus (BRSV) in cell cultures and tissues of experimentally infected mice and calves, using a commercial monoclonal antibody (Mab) against human respiratory syncytial virus (HRSV), as a less expensive alternative, instead of producing specific monoclonal antibodies to BRSV. Clinical samples from calves suffering respiratory disease were also submitted to this test. IHC detected BRSV antigens in mouse tracheas (3, 5 and 7 days post-infection) and lungs (5 and 7 days post-infection), and in one of three lungs from experimentally infected calves. Lungs samples from two naturally infected calves were tested and resulted positive for BRSV by the IHC test. These results suggest that this test may be used in the future for diagnosis as well as a useful tool to assess the distribution of BRSV infections in Brazilian herds.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 2225-2225
Author(s):  
Steven S. Cha ◽  
Monic J. Stuart ◽  
Susan Poutanen ◽  
Sasha Madison ◽  
Ellen Jo Baron ◽  
...  

Abstract Although the precise incidence, epidemiology, and impact of human respiratory syncytial virus (HRSV) infection may differ greatly from center to center, there is little debate about the potential for associated morbidity and mortality. We report our approach to infection control and clinical management to reduce the clinical impact of HRSV in our BMT population. An outbreak on our BMT unit was identified in the Winter of 2000–2001. RT-PCR and nucleotide (nt) sequencing of a 270 nt variable region of the HRSV G gene of 6 cases and 12 unrelated community controls was performed. Of the 6 cases, 4 were identified as group A (genotype GA2) and 2 were identified as group B (genotype GB3). Sequences of the GA2 hospital cluster cases were identical as were the 2 hospital case GB3 isolates and the hospital case sequences differed from their respective community controls. These data suggested that there were 2 separate introductions of virus from the community followed by nosocomial spread within the outpatient facility and we were able to direct our infection control efforts and treatment strategies accordingly. An educational campaign was implemented for staff and patients emphasizing the importance of early identification and isolation of patients with HRSV. All patients with either upper (URTI) or lower respiratory tract infection (LRTI) symptoms were isolated and a nasopharyngeal swab for HRSV direct detection and CXR were performed. Post-transplantation, patients with an URTI and a positive swab for HRSV received aerosolized ribavirin (1-beta-D-ribofuranosyl-1,2,4-triazole-3-carboxamide, 6g per day) and 1.5g per kg bodyweight per day of an intravenous immunoglobulin preparation (IVIg) for 3 days. Patients with a positive NP swab and an abnormal CXR or a requirement for supplemental oxygen also received IVIg and ribavirin; however, the treatment was continued until patients no longer required oxygen supplementation. Overall, 3 patients had received autologous and 19 had received allogeneic grafts (14 nonmyeloablative, 5 myeloablative). Steroid administration was not a risk factor for disease. Since the sentinel outbreak, there was a significant decrease in the case attack rates per 10,000 patient days (0.30, 0.27, 0.15, and <0.10, per season, respectively) despite no annual decrease in the number of total cases at our institution during the same time period. Similarly, the median time to diagnosis decreased (6.0, 5.0, and 2.5 days, respectively). In the sentinel outbreak, 4 of the 9 HRSV patients, either presented or progressed to LRTI without intervention. Since the institution of our current strategies, only 3 of the 15 HRSV patients presented with LRTI; no patients progressed from upper to lower tract disease. Our findings demonstrate: (1) HRSV sequence analysis is a useful epidemiologic tool in identifying breeches in infection control measures and (2) the highly cost-effective strategy of educational materials for staff and patients was associated with a reduction in the time to diagnosis/treatment and a lower incidence of LRTI. Moreover, treatment of URTI with a truncated course of ribavirin paired with IVIg was associated with a reduction in the overall incidence of infection and appeared to prevent the progression of URTI to LRTI.


2010 ◽  
Vol 84 (15) ◽  
pp. 7500-7512 ◽  
Author(s):  
Alfonsina Trento ◽  
Inmaculada Casas ◽  
Ana Calderón ◽  
Maria L. Garcia-Garcia ◽  
Cristina Calvo ◽  
...  

ABSTRACT The emergence of natural isolates of human respiratory syncytial virus group B (HRSV-B) with a 60-nucleotide (nt) duplication in the G protein gene in Buenos Aires, Argentina, in 1999 (A. Trento et al., J. Gen. Virol. 84:3115-3120, 2003) and their dissemination worldwide allowed us to use the duplicated segment as a natural tag to examine in detail the evolution of HRSV during propagation in its natural host. Viruses with the duplicated segment were all clustered in a new genotype, named BA (A. Trento et al., J. Virol. 80:975-984, 2006). To obtain information about the prevalence of these viruses in Spain, we tested for the presence of the duplicated segment in positive HRSV-B clinical samples collected at the Severo Ochoa Hospital (Madrid) during 12 consecutive epidemics (1996-1997 to 2007-2008). Viruses with the 60-nt duplication were found in 61 samples, with a high prevalence relative to the rest of B genotypes in the most recent seasons. Global phylogenetic and demographic analysis of all G sequences containing the duplication, collected across five continents up until April 2009, revealed that the prevalence of the BA genotype increased gradually until 2004-2005, despite its rapid dissemination worldwide. After that date and coinciding with a bottleneck effect on the population size, a relatively new BA lineage (BA-IV) replaced all other group B viruses, suggesting further adaptation of the BA genotype to its natural host.


2006 ◽  
Vol 80 (2) ◽  
pp. 975-984 ◽  
Author(s):  
Alfonsina Trento ◽  
Mariana Viegas ◽  
Mónica Galiano ◽  
Cristina Videla ◽  
Guadalupe Carballal ◽  
...  

ABSTRACT A total of 47 clinical samples were identified during an active surveillance program of respiratory infections in Buenos Aires (BA) (1999 to 2004) that contained sequences of human respiratory syncytial virus (HRSV) with a 60-nucleotide duplication in the attachment (G) protein gene. This duplication was analogous to that previously described for other three viruses also isolated in Buenos Aires in 1999 (A. Trento et al., J. Gen. Virol. 84:3115-3120, 2003). Phylogenetic analysis indicated that BA sequences with that duplication shared a common ancestor (dated about 1998) with other HRSV G sequences reported worldwide after 1999. The duplicated nucleotide sequence was an exact copy of the preceding 60 nucleotides in early viruses, but both copies of the duplicated segment accumulated nucleotide substitutions in more recent viruses at a rate apparently higher than in other regions of the G protein gene. The evolution of the viruses with the duplicated G segment apparently followed the overall evolutionary pattern previously described for HRSV, and this genotype has replaced other prevailing antigenic group B genotypes in Buenos Aires and other places. Thus, the duplicated segment represents a natural tag that can be used to track the dissemination and evolution of HRSV in an unprecedented setting. We have taken advantage of this situation to reexamine the molecular epidemiology of HRSV and to explore the natural history of this important human pathogen.


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