scholarly journals The local Universe in the era of large surveys – I. Spectral classification of S0 galaxies

2020 ◽  
Vol 495 (4) ◽  
pp. 4135-4157 ◽  
Author(s):  
J L Tous ◽  
J M Solanes ◽  
J D Perea
Keyword(s):  
Dimensional Space ◽  
Spectral Characteristics ◽  
Principal Component ◽  
Morphological Type ◽  
Physical Parameters ◽  
Star Forming ◽  
Interesting Possibility ◽  
Low Dimensional ◽  
Free Machine

ABSTRACT This is the first paper in a series devoted to review the main properties of galaxies designated S0 in the Hubble classification system. Our aim is to gather abundant and, above all, robust information on the most relevant physical parameters of this poorly understood morphological type and their possible dependence on the environment, which could later be used to assess their possible formation channel(s). The adopted approach combines the characterization of the fundamental features of the optical spectra of $68\, 043$ S0 with heliocentric z ≲ 0.1 with the exploration of a comprehensive set of their global attributes. A principal component analysis is used to reduce the huge number of dimensions of the spectral data to a low-dimensional space facilitating a bias-free machine-learning-based classification of the galaxies. This procedure has revealed that objects bearing the S0 designation consist, despite their similar morphology, of two separate subpopulations with statistically inconsistent physical properties. Compared to the absorption-dominated S0, those with significant nebular emission are, on average, somewhat less massive, more luminous with less concentrated light profiles, have a younger, bluer, and metal-poorer stellar component, and avoid high-galaxy-density regions. Noteworthy is the fact that the majority of members of this latter class, which accounts for at least a quarter of the local S0 population, show star formation rates and spectral characteristics entirely similar to those seen in late spirals. Our findings suggest that star-forming S0 might be less rare than hitherto believed and raise the interesting possibility of identifying them with plausible progenitors of their quiescent counterparts.

scholarly journals A Frequency-Based Approach for the Detection and Classification of Structural Changes Using t-SNE †

Sensors ◽  
2019 ◽  
Vol 19 (23) ◽  
pp. 5097 ◽  
Author(s):  
David Agis ◽  
Francesc Pozo
Keyword(s):  
Structural Changes ◽  
Dimensional Space ◽  
Principal Component ◽  
Majority Voting ◽  
Data Set ◽  
Centroid Distance ◽  
Low Dimensional ◽  
Reduced Data

This work presents a structural health monitoring (SHM) approach for the detection and classification of structural changes. The proposed strategy is based on t-distributed stochastic neighbor embedding (t-SNE), a nonlinear procedure that is able to represent the local structure of high-dimensional data in a low-dimensional space. The steps of the detection and classification procedure are: (i) the data collected are scaled using mean-centered group scaling (MCGS); (ii) then principal component analysis (PCA) is applied to reduce the dimensionality of the data set; (iii) t-SNE is applied to represent the scaled and reduced data as points in a plane defining as many clusters as different structural states; and (iv) the current structure to be diagnosed will be associated with a cluster or structural state based on three strategies: (a) the smallest point-centroid distance; (b) majority voting; and (c) the sum of the inverse distances. The combination of PCA and t-SNE improves the quality of the clusters related to the structural states. The method is evaluated using experimental data from an aluminum plate with four piezoelectric transducers (PZTs). Results are illustrated in frequency domain, and they manifest the high classification accuracy and the strong performance of this method.

scholarly journals Optimizing the structure and movement of a robotic bat with biological kinematic synergies

2018 ◽  
Vol 37 (10) ◽  
pp. 1233-1252 ◽  
Author(s):  
Jonathan Hoff ◽  
Alireza Ramezani ◽  
Soon-Jo Chung ◽  
Seth Hutchinson
Keyword(s):  
Principal Component Analysis ◽  
Topological Structure ◽  
Degrees Of Freedom ◽  
Dimensional Space ◽  
Principal Component ◽  
Biologically Inspired ◽  
Wing Kinematics ◽  
Wing Motion ◽  
Kinematic Synergies ◽  
Low Dimensional

In this article, we present methods to optimize the design and flight characteristics of a biologically inspired bat-like robot. In previous, work we have designed the topological structure for the wing kinematics of this robot; here we present methods to optimize the geometry of this structure, and to compute actuator trajectories such that its wingbeat pattern closely matches biological counterparts. Our approach is motivated by recent studies on biological bat flight that have shown that the salient aspects of wing motion can be accurately represented in a low-dimensional space. Although bats have over 40 degrees of freedom (DoFs), our robot possesses several biologically meaningful morphing specializations. We use principal component analysis (PCA) to characterize the two most dominant modes of biological bat flight kinematics, and we optimize our robot’s parametric kinematics to mimic these. The method yields a robot that is reduced from five degrees of actuation (DoAs) to just three, and that actively folds its wings within a wingbeat period. As a result of mimicking synergies, the robot produces an average net lift improvesment of 89% over the same robot when its wings cannot fold.

Statistical Approach to Shape from Shading: Reconstruction of Three-Dimensional Face Surfaces from Single Two-Dimensional Images

1996 ◽  
Vol 8 (6) ◽  
pp. 1321-1340 ◽  
Author(s):  
Joseph J. Atick ◽  
Paul A. Griffin ◽  
A. Norman Redlich
Keyword(s):  
Dimensional Space ◽  
Three Dimensional ◽  
Practical Interest ◽  
Principal Component ◽  
Shape From Shading ◽  
Shape Space ◽  
Two Dimensional ◽  
Two Dimensional Image ◽  
Low Dimensional ◽  
Dimensional Object

The human visual system is proficient in perceiving three-dimensional shape from the shading patterns in a two-dimensional image. How it does this is not well understood and continues to be a question of fundamental and practical interest. In this paper we present a new quantitative approach to shape-from-shading that may provide some answers. We suggest that the brain, through evolution or prior experience, has discovered that objects can be classified into lower-dimensional object-classes as to their shape. Extraction of shape from shading is then equivalent to the much simpler problem of parameter estimation in a low-dimensional space. We carry out this proposal for an important class of three-dimensional (3D) objects: human heads. From an ensemble of several hundred laser-scanned 3D heads, we use principal component analysis to derive a low-dimensional parameterization of head shape space. An algorithm for solving shape-from-shading using this representation is presented. It works well even on real images where it is able to recover the 3D surface for a given person, maintaining facial detail and identity, from a single 2D image of his face. This algorithm has applications in face recognition and animation.

scholarly journals Supervised deep learning embeddings for the prediction of cervical cancer diagnosis

2018 ◽  
Vol 4 ◽  
pp. e154 ◽  
Author(s):  
Kelwin Fernandes ◽  
Davide Chicco ◽  
Jaime S. Cardoso ◽  
Jessica Fernandes
Keyword(s):  
Cervical Cancer ◽  
Deep Learning ◽  
Dimensional Space ◽  
Cervical Screening ◽  
Area Under The Curve ◽  
Clinical Findings ◽  
Screening Programs ◽  
Efficient Access ◽  
Low Dimensional

Cervical cancer remains a significant cause of mortality all around the world, even if it can be prevented and cured by removing affected tissues in early stages. Providing universal and efficient access to cervical screening programs is a challenge that requires identifying vulnerable individuals in the population, among other steps. In this work, we present a computationally automated strategy for predicting the outcome of the patient biopsy, given risk patterns from individual medical records. We propose a machine learning technique that allows a joint and fully supervised optimization of dimensionality reduction and classification models. We also build a model able to highlight relevant properties in the low dimensional space, to ease the classification of patients. We instantiated the proposed approach with deep learning architectures, and achieved accurate prediction results (top area under the curve AUC = 0.6875) which outperform previously developed methods, such as denoising autoencoders. Additionally, we explored some clinical findings from the embedding spaces, and we validated them through the medical literature, making them reliable for physicians and biomedical researchers.

scholarly journals Low Dimensional Representations along Intrinsic Reaction Coordinates and Molecular Dynamics Trajectories Using Interatomic Distance Matrices

2019 ◽  
Author(s):  
Stephanie Hare ◽  
Lars Bratholm ◽  
David Glowacki ◽  
Barry Carpenter
Keyword(s):  
Molecular Dynamics ◽  
Principal Component Analysis ◽  
Dimensionality Reduction ◽  
Physical Meaning ◽  
Interatomic Distance ◽  
Dimensional Space ◽  
Principal Component ◽  
Reaction Pathways ◽  
Reaction Coordinates ◽  
Low Dimensional

Low dimensional representations along reaction pathways were produced using newly created Python software that utilises Principal Component Analysis (PCA) to do dimensionality reduction. Plots of these pathways in reduced dimensional space, as well as the physical meaning of the reduced dimensional axes, are discussed.

scholarly journals Hyperspectral Image-Based Variety Classification of Waxy Maize Seeds by the t-SNE Model and Procrustes Analysis

Sensors ◽  
2018 ◽  
Vol 18 (12) ◽  
pp. 4391 ◽  
Author(s):  
Aimin Miao ◽  
Jiajun Zhuang ◽  
Yu Tang ◽  
Yong He ◽  
Xuan Chu ◽  
...  
Keyword(s):  
Principal Component Analysis ◽  
Classification Accuracy ◽  
Hyperspectral Image ◽  
Principal Component ◽  
Procrustes Analysis ◽  
Waxy Maize ◽  
Maize Seeds ◽  
Variety Classification ◽  
Low Dimensional

Variety classification is an important step in seed quality testing. This study introduces t-distributed stochastic neighbourhood embedding (t-SNE), a manifold learning algorithm, into the field of hyperspectral imaging (HSI) and proposes a method for classifying seed varieties. Images of 800 maize kernels of eight varieties (100 kernels per variety, 50 kernels for each side of the seed) were imaged in the visible- near infrared (386.7–1016.7 nm) wavelength range. The images were pre-processed by Procrustes analysis (PA) to improve the classification accuracy, and then these data were reduced to low-dimensional space using t-SNE. Finally, Fisher’s discriminant analysis (FDA) was used for classification of the low-dimensional data. To compare the effect of t-SNE, principal component analysis (PCA), kernel principal component analysis (KPCA) and locally linear embedding (LLE) were used as comparative methods in this study, and the results demonstrated that the t-SNE model with PA pre-processing has obtained better classification results. The highest classification accuracy of the t-SNE model was up to 97.5%, which was much more satisfactory than the results of the other models (up to 75% for PCA, 85% for KPCA, 76.25% for LLE). The overall results indicated that the t-SNE model with PA pre-processing can be used for variety classification of waxy maize seeds and be considered as a new method for hyperspectral image analysis.

scholarly journals Classification of Different Blueberry Cultivars by Analysis of Physical Factors, Chemical and Nutritional Ingredients, and Antioxidant Capacities

2020 ◽  
Vol 2020 ◽  
pp. 1-9
Author(s):  
Juan Song ◽  
Qiong Shi ◽  
Si-Min Yan ◽  
Hai-Yan Fu ◽  
Si-Zhan Wu ◽  
...  
Keyword(s):  
Supervised Classification ◽  
Particle Swarm Optimization Algorithm ◽  
Principal Component ◽  
Physical Parameters ◽  
Physical Factors ◽  
Quality Indices ◽  
Quality Factors ◽  
Key Factors ◽  
Nutritional Components

Blueberry fruits of different cultivars are featured with different quality indices. In this work, three types of quality factors, including 6 physical parameters, 12 chemical and nutritional components, and 3 antioxidant indices, were measured to compare and classify blueberry fruits from 12 different cultivars in China. Using the autoscaled data of quality factors, unsupervised principal component analysis was performed for exploratory analysis of intercultivar differences and the influences of quality factors. A supervised classification method, partial least squares discriminant analysis (PLSDA), was combined with the global particle swarm optimization algorithm (PSO) and two multiclass strategies, one-versus-rest (OVR) and one-versus-one (OVO), to select discriminative quality factors and develop classification models of the 12 cultivars. As a result, OVO-PLSDA with 8 quality factors could achieve the classification accuracy of 0.915. This study will provide new insights into the quality variations and key factors among different blueberry cultivars.

scholarly journals Joint identification of sex and sex-linked scaffolds in non-model organisms using low depth sequencing data

2021 ◽  
Author(s):  
Casia Nursyifa ◽  
Anna Bruniche-Olsen ◽  
Genis Garcia-Erill ◽  
Rasmus Heller ◽  
Anders Albrechtsen
Keyword(s):  
Dimensional Space ◽  
Sequence Similarity ◽  
Bird Species ◽  
Model Organism ◽  
Principal Component ◽  
Gaussian Mixture ◽  
Model Organisms ◽  
Sequencing Data ◽  
Mammal Species ◽  
Low Dimensional

Being able to assign sex to individuals and identify autosomal and sex-linked scaffolds are essential in most population genomic analyses. Non-model organisms often have genome assemblies at scaffold level and lack characterization of sex-linked scaffolds. Previous methods to identify sex and sex-linked scaffolds have relied on e.g. sequence similarity between the non-model organism and a closely related species or prior knowledge about the sex of the samples to identify sex-linked scaffolds. In the latter case, the difference in depth of coverage between the autosomes and the sex chromosomes are used. Here we present "Sex Assignment Through Coverage" (SATC), a method to identify sample sex and sex-linked scaffolds from NGS data. The method only requires a scaffold level reference assembly and sampling of both sexes with whole genome sequencing (WGS) data. We use the sequencing depth distribution across scaffolds to jointly identify: i) male and female individuals and ii) sex-linked scaffolds. This is achieved through projecting the scaffold depths into a low-dimensional space using principal component analysis (PCA) and subsequent Gaussian mixture clustering. We demonstrate the applicability of our method using data from five mammal species and a bird species complex. The method is open source and freely available at https://github.com/popgenDK/SATC

scholarly journals Learning Grasp Configuration Through Object-Specific Hand Primitives for Posture Planning of Anthropomorphic Hands

2021 ◽  
Vol 15 ◽  
Author(s):  
Bingchen Liu ◽  
Li Jiang ◽  
Shaowei Fan ◽  
Jinghui Dai
Keyword(s):  
Degrees Of Freedom ◽  
Dimensional Space ◽  
Principal Component ◽  
Past Research ◽  
Shape Descriptor ◽  
Gaussian Mixture ◽  
Human Hand ◽  
Mixture Regression ◽  
Low Dimensional ◽  
Anthropomorphic Hands

The proposal of postural synergy theory has provided a new approach to solve the problem of controlling anthropomorphic hands with multiple degrees of freedom. However, generating the grasp configuration for new tasks in this context remains challenging. This study proposes a method to learn grasp configuration according to the shape of the object by using postural synergy theory. By referring to past research, an experimental paradigm is first designed that enables the grasping of 50 typical objects in grasping and operational tasks. The angles of the finger joints of 10 subjects were then recorded when performing these tasks. Following this, four hand primitives were extracted by using principal component analysis, and a low-dimensional synergy subspace was established. The problem of planning the trajectories of the joints was thus transformed into that of determining the synergy input for trajectory planning in low-dimensional space. The average synergy inputs for the trajectories of each task were obtained through the Gaussian mixture regression, and several Gaussian processes were trained to infer the inputs trajectories of a given shape descriptor for similar tasks. Finally, the feasibility of the proposed method was verified by simulations involving the generation of grasp configurations for a prosthetic hand control. The error in the reconstructed posture was compared with those obtained by using postural synergies in past work. The results show that the proposed method can realize movements similar to those of the human hand during grasping actions, and its range of use can be extended from simple grasping tasks to complex operational tasks.

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