scholarly journals A Mn-sensing riboswitch activates expression of a Mn2+/Ca2+ ATPase transporter in Streptococcus

2019 ◽  
Vol 47 (13) ◽  
pp. 6885-6899 ◽  
Author(s):  
Julia E Martin ◽  
My T Le ◽  
Nabin Bhattarai ◽  
Daiana A Capdevila ◽  
Jiangchuan Shen ◽  
...  

Abstract Maintaining manganese (Mn) homeostasis is important for the virulence of numerous bacteria. In the human respiratory pathogen Streptococcus pneumoniae, the Mn-specific importer PsaBCA, exporter MntE, and transcriptional regulator PsaR establish Mn homeostasis. In other bacteria, Mn homeostasis is controlled by yybP-ykoY family riboswitches. Here, we characterize a yybP-ykoY family riboswitch upstream of the mgtA gene encoding a PII-type ATPase in S. pneumoniae, suggested previously to function in Ca2+ efflux. We show that the mgtA riboswitch aptamer domain adopts a canonical yybP-ykoY structure containing a three-way junction that is compacted in the presence of Ca2+ or Mn2+ at a physiological Mg2+ concentration. Although Ca2+ binds to the RNA aptamer with higher affinity than Mn2+, in vitro activation of transcription read-through of mgtA by Mn2+ is much greater than by Ca2+. Consistent with this result, mgtA mRNA and protein levels increase ≈5-fold during cellular Mn stress, but only in genetic backgrounds of S. pneumoniae and Bacillus subtilis that exhibit Mn2+ sensitivity, revealing that this riboswitch functions as a failsafe ‘on’ signal to prevent Mn2+ toxicity in the presence of high cellular Mn2+. In addition, our results suggest that the S. pneumoniae yybP-ykoY riboswitch functions to regulate Ca2+ efflux under these conditions.

2015 ◽  
Vol 114 (08) ◽  
pp. 337-349 ◽  
Author(s):  
Dragana Komnenov ◽  
Corey Scipione ◽  
Zainab Bazzi ◽  
Justin Garabon ◽  
Marlys Koschinsky ◽  
...  

SummaryThrombin activatable fibrinolysis inhibitor (TAFI) is the zymogen form of a basic carboxypeptidase (TAFIa) with both anti-fibrinolytic and anti-inflammatory properties. The role of TAFI in inflammatory disease is multifaceted and involves modulation both of specific inflammatory mediators as well as of the behaviour of inflammatory cells. Moreover, as suggested by in vitro studies, inflammatory mediators are capable of regulating the expression of CPB2, the gene encoding TAFI. In this study we addressed the hypothesis that decreased TAFI levels observed in inflammation are due to post-transcriptional mechanisms. Treatment of human HepG2 cells with pro-inflammatory cytokines TNFα, IL-6 in combination with IL-1β, or with bacterial lipopolysaccharide (LPS) decreased TAFI protein levels by approximately two-fold over 24 to 48 hours of treatment. Conversely, treatment of HepG2 cells with the anti-inflammatory cytokine IL-10 increased TAFI protein levels by two-fold at both time points. We found that the mechanistic basis for this modulation of TAFI levels involves binding of tristetraprolin (TTP) to the CPB2 3′-UTR, which mediates CPB2 mRNA destabilisation. In this report we also identified that HuR, another ARE-binding protein but one that stabilises transcripts, is capable of binding the CBP2 3’UTR. We found that pro-inflammatory mediators reduce the occupancy of HuR on the CPB2 3’-UTR and that the mutation of the TTP binding site in this context abolishes this effect, although TTP and HuR appear to contact discrete binding sites. Interestingly, all of the mediators tested appear to increase TAFI protein expression in THP-1 macrophages, likewise through effects on CPB2 mRNA stability.


Blood ◽  
2003 ◽  
Vol 101 (3) ◽  
pp. 1111-1117 ◽  
Author(s):  
Stefan J. Erkeland ◽  
Marijke Valkhof ◽  
Claudia Heijmans-Antonissen ◽  
Ruud Delwel ◽  
Peter J. M. Valk ◽  
...  

AbstractThe genetic defects underlying the pathogenesis of acute myeloid leukemia (AML) are still largely unknown. Retroviral insertion mutagenesis in mice has become a powerful tool to identify candidate genes involved in the development of leukemia and lymphoma. We have used this strategy with the 1.4 strain of Graffi murine leukemia virus (MuLV), which predominantly causes myeloid leukemias. Here, we report that Graffi-1.4–induced AML frequently harbors virus integrations in the gene encoding the transcription factor Yin Yang 1 (YY1). These integrations occurred in both orientations, and all were located in the 5′ promoter region of the gene, 0.5 to 1.5 kb upstream of the major transcriptional start site. Luciferase reporter assays showed that virus integration in this region increases promoter activity and renders it independent of a functional binding site for Sp1, a major transcriptional regulator of YY1. We used the murine 32D model to study the consequence of perturbed YY1 expression for myelopoiesis. YY1 protein levels were high in 32D parental cells maintained in interleukin-3–containing medium, but they dropped when the cells were induced to differentiate by granulocyte–colony-stimulating factor (G-CSF). Strikingly, G-CSF–induced neutrophilic differentiation was reduced in 32D cell transfectants ectopically expressing YY1. In similar experiments on primary bone marrow cells, enforced YY1 expression blocked the outgrowth of CFU-GM colonies. Increased YY1 expression was seen in some cases of human AML. Collectively, these data imply a possible role of perturbed expression of YY1 in the development of AML through interference with the myeloid differentiation program in the leukemic progenitor cells.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 3386-3386
Author(s):  
Stefan J. Erkeland ◽  
Marijke Valkhof ◽  
Astrid Danen-van Oorschot ◽  
Ivo P. Touw

Abstract Graffi-1.4 (Gr-1.4) and CasBrM murine leukemia viruses induce myeloid leukemias due to deregulation of genes by proviral integration. Some of these genes, such as peroxiredoxin (PRDX-2), vitamin D upregulated protein 1 (VDUP1), and dual specific phosphatase 10 (DUSP10), are involved in the regulation of reactive oxygen species (ROS) induced stress pathways. ROS are known to influence signal transduction by modulating the activity of protein and lipid phosphatases and cell differentiation at relatively low levels, whereas high ROS levels induce apoptosis. Perturbations of the cellular redox state have a high impact on these processes. VDUP1 is a recently identified oxidative stress-responsive gene that suppresses thioredoxin activity in cardiomyocytes, thereby controlling cell survival. Integrations in the gene encoding VDUP1 all occurred at the 5′ and 3′ region with a frequency of 100% of the Gr-1.4 and 62% of the CasBrM induced leukemias. All cases of CasBrM leukemias with 3′ integrations (33% of leukemias) have additional integrations at the 5′end of VDUP1, suggesting that multiple virus integration sites cooperate in gene deregulation. A hotspot of integrations was found around 900 base pairs upstream of the ATG, near two newly identified heat shock elements. The presence of Gr-1.4 LTR sequences in the VDUP1 promoter and in the 3′ untranslated region results in a 2–2.5 times enhanced luciferase signal when compared to normal promoter activity. This effect was even greater (up to 6-fold) under stress conditions, suggesting that normal VDUP1 regulation is disrupted by viral integration. In human AML, we found that expression of VDUP1 transcripts is different in distinct patient clusters recently identified by gene expression profiling (Valk et al NEJM 2004, 350:1617-28), suggesting a specific involvement of this gene in certain subgroups of AML. For instance, AML samples exhibiting t(8;21) have significantly higher VDUP1 transcript levels compared to other AML patients. Furthermore, high VDUP1 protein levels significantly correlated with FAB classifications M4 and M5 and with younger age (<35 yrs), whereas low VDUP1 expression were found in FAB-M1 and M2 and in patients older than 50 years. To study the consequences of VDUP1 overexpression in normal myelopoiesis, we overexpressed the gene in murine hematopoietic progenitors by retroviral gene transfer and performed in vitro colony assays with G-CSF and liquid culture assay with different cytokine cocktails. Irrespective of the cytokine used, ectopic expression of VDUP1 resulted in accelerated apoptosis and inhibited proliferation, indicating that deregulation of VDUP1 as a single event does not confer a growth advantage and implying that additional events are needed for full leukemic transformation of myeloid precursors. DUSP10 or other members of the DUSP family might be candidates, as we observed that overexpression of DUSP10 in myeloid 32D cells decreased oxidative stress-induced activation of JNK and p38MAPK and inhibited apoptosis. We are currently generating 32D models in which VDUP1 and DUSP10 can be inducibly expressed to further address this hypothesis. In conclusion, we found that VDUP1 expression is frequently enhanced in mouse leukemia models due to viral integrations and also in distinct subgroups of human AML. Our data thus identify disruption of VDUP1-controlled oxidative stress responses as a novel mechanism involved in the pathogenesis of AML.


Microbiology ◽  
2014 ◽  
Vol 160 (4) ◽  
pp. 789-794 ◽  
Author(s):  
Amin Omairi-Nasser ◽  
Carla V. Galmozzi ◽  
Amel Latifi ◽  
M. Isabel Muro-Pastor ◽  
Ghada Ajlani

In several cyanobacteria, petH, the gene encoding ferredoxin:NADP oxidoreductase (FNR), is transcribed from at least two promoters depending on growth conditions. Two transcripts (short and long) are translated from two different translation initiation sites, resulting in two isoforms (large and small, respectively). Here, we show that in Synechocystis PCC6803 the global transcriptional regulator NtcA activates transcription from the distal petH promoter. Modification of the NtcA-binding site prevents NtcA binding to the promoter in vitro and abolishes accumulation of the small isoform of FNR in vivo. We also demonstrate that a similar petH transcription and translation regime occurs in other cyanobacteria. The conditions under which this system operates provide hints for the function of each FNR isoform.


2006 ◽  
Vol 72 (1) ◽  
pp. 71-77 ◽  
Author(s):  
Kazuhiko Kurosawa ◽  
Takeshi Hosaka ◽  
Norimasa Tamehiro ◽  
Takashi Inaoka ◽  
Kozo Ochi

ABSTRACT The capacity of ribosomal modification to improve antibiotic production by Streptomyces spp. has already been demonstrated. Here we show that introduction of mutations that produce streptomycin resistance (str) also enhances α-amylase (and protease) production by a strain of Bacillus subtilis as estimated by measuring the enzyme activity. The str mutations are point mutations within rpsL, the gene encoding the ribosomal protein S12. In vivo as well as in vitro poly(U)-directed cell-free translation systems showed that among the various rpsL mutations K56R (which corresponds to position 42 in E. coli) was particularly effective at enhancing α-amylase production. Cells harboring the K56R mutant ribosome exhibited enhanced translational activity during the stationary phase of cell growth. In addition, the K56R mutant ribosome exhibited increased 70S complex stability in the presence of low Mg2+ concentrations. We therefore conclude that the observed increase in protein synthesis activity by the K56R mutant ribosome reflects increased stability of the 70S complex and is responsible for the increase in α-amylase production seen in the affected strain.


2006 ◽  
Vol 188 (10) ◽  
pp. 3674-3681 ◽  
Author(s):  
Brooke A. McDaniel ◽  
Frank J. Grundy ◽  
Vineeta P. Kurlekar ◽  
Jerneja Tomsic ◽  
Tina M. Henkin

ABSTRACT Genes in the S-box family are regulated by binding of S-adenosylmethionine (SAM) to the 5′ region of the mRNA of the regulated gene. SAM binding was previously shown to promote a rearrangement of the RNA structure that results in premature termination of transcription in vitro and repression of expression of the downstream coding sequence. The S-box RNA element therefore acts as a SAM-binding riboswitch in vitro. In an effort to identify factors other than SAM that could be involved in the S-box regulatory mechanism in vivo, we searched for trans-acting mutations in Bacillus subtilis that act to disrupt repression of S-box gene expression during growth under conditions where SAM pools are elevated. We identified a single mutant that proved to have one nucleotide substitution in the metK gene, encoding SAM synthetase. This mutation, designated metK10, resulted in a 15-fold decrease in SAM synthetase activity and a 4-fold decrease in SAM concentration in vivo. The metK10 mutation specifically affected S-box gene expression, and the increase in expression under repressing conditions was dependent on the presence of a functional transcriptional antiterminator element. The observation that the mutation identified in this search affects SAM production supports the model that the S-box RNAs directly monitor SAM in vivo, without a requirement for additional factors.


2005 ◽  
Vol 187 (20) ◽  
pp. 7155-7160 ◽  
Author(s):  
Paola Rossolillo ◽  
Ilaria Marinoni ◽  
Elisa Galli ◽  
Anna Colosimo ◽  
Alessandra M. Albertini

ABSTRACT The first genetic, in vivo, and in vitro evidences that YrxA is the regulator of NAD de novo biosynthesis in Bacillus subtilis are hereby reported. The protein is essential to the transcription repression of the divergent operons nadBCA and nifS-yrxA in the presence of nicotinic acid and binds to their shared operator-promoter region.


2007 ◽  
Vol 292 (5) ◽  
pp. F1617-F1625 ◽  
Author(s):  
Tzur Rosenberg ◽  
Catherine Shachaf ◽  
Maty Tzukerman ◽  
Karl Skorecki

Levels of the type IIa Na/Pi (Na/Pi-IIa) cotransporter, which serves as the principal mediator of phosphate reabsorption in the kidney, can be modulated through posttranscriptional or posttranslational mechanisms by dietary, hormonal, and pharmacological influences. Previous studies have not demonstrated clear-cut evidence for modulation of Na/Pi-IIa cotransporter levels through transcriptional mechanisms. We have previously demonstrated that a 4.7-kb rat genomic fragment upstream of the rodent Npt2 gene encoding the Na/Pi-IIa cotransporter, is sufficient to mediate its transcriptional activity in vitro (Shachaf C, Skorecki KL, Tzukerman M. Am J Physiol Renal Physiol 278: F406–F416, 2000). Accordingly, we have established an in vivo experimental model in which this Npt2 genomic fragment fused upstream of a Lac Z reporter gene was expressed as a transgene in mice. The nine independent transgenic founder lines generated exhibited Lac Z reporter gene expression specifically in the renal cortex. This renal cortical-specific expression driven by the Npt2 promoter was confirmed at the mRNA and protein levels using RT-PCR, histochemistry, and Lac Z enzymatic activity. Furthermore, the expression of the transgene correlated with expression of the endogenous Npt2 gene during embryonic and early postnatal development. Thus we have generated a transgenic mouse model which will enable in vivo investigation of the contribution of transcriptional mechanisms to the overall regulation of Na/Pi-IIa expression under physiological and pathophysiological conditions.


2010 ◽  
Vol 192 (12) ◽  
pp. 3174-3186 ◽  
Author(s):  
Jennifer Gutierrez ◽  
Rachelle Smith ◽  
Kit Pogliano

ABSTRACT SpoIID is a membrane-anchored enzyme that degrades peptidoglycan and is essential for engulfment and sporulation in Bacillus subtilis. SpoIID is targeted to the sporulation septum, where it interacts with two other proteins required for engulfment: SpoIIP and SpoIIM. We changed conserved amino acids in SpoIID to alanine to determine whether there was a correlation between the effect of each substitution on the in vivo and in vitro activities of SpoIID. We identified one amino acid substitution, E88A, that eliminated peptidoglycan degradation activity and one, D210A, that reduced it, as well as two substitutions that destabilized the protein in B. subtilis (R106A and K203A). Using these mutants, we show that the peptidoglycan degradation activity of SpoIID is required for the first step of engulfment (septal thinning), as well as throughout membrane migration, and we show that SpoIID levels are substantially above the minimum required for engulfment. The inactive mutant E88A shows increased septal localization compared to the wild type, suggesting that the degradation cycle of the SpoIID/SpoIIP complex is accompanied by the activity-dependent release of SpoIID from the complex and subsequent rebinding. This mutant is also capable of moving SpoIIP across the sporulation septum, suggesting that SpoIID binding, but not peptidoglycan degradation activity, is needed for relocalization of SpoIIP. Finally, the mutant with reduced activity (D210A) causes uneven engulfment and time-lapse microscopy indicates that the fastest-moving membrane arm has greater concentrations of SpoIIP than the slower-moving arm, demonstrating a correlation between SpoIIP protein levels and the rate of membrane migration.


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