scholarly journals Monophyly, Taxon Sampling, and the Nature of Ranks in the Classification of Orb-Weaving Spiders (Araneae: Araneoidea)

Author(s):  
Robert J Kallal ◽  
Dimitar Dimitrov ◽  
Miquel A Arnedo ◽  
Gonzalo Giribet ◽  
Gustavo Hormiga

Abstract We address some of the taxonomic and classification changes proposed by Kuntner et al. (2019) in a comparative study on the evolution of sexual size dimorphism in nephiline spiders. Their proposal to recircumscribe araneids and to rank the subfamily Nephilinae as a family is fundamentally flawed as it renders the family Araneidae paraphyletic. We discuss the importance of monophyly, outgroup selection, and taxon sampling, the subjectivity of ranks, and the implications of the age of origin criterion to assign categorical ranks in biological classifications. We explore the outcome of applying the approach of Kuntner et al. (2019) to the classification of spiders with emphasis on the ecribellate orb-weavers (Araneoidea) using a recently published dated phylogeny. We discuss the implications of including the putative sister group of Nephilinae (the sexually dimorphic genus Paraplectanoides) and the putative sister group of Araneidae (the miniature, monomorphic family Theridiosomatidae). We propose continuation of the phylogenetic classification put forth by Dimitrov et al. (2017), and we formally rank Nephilinae and Phonognathinae as subfamilies of Araneidae. Our classification better reflects the understanding of the phylogenetic placement and evolutionary history of nephilines and phonognathines while maintaining the diagnosability of Nephilinae. It also fulfills the fundamental requirement that taxa must be monophyletic, and thus avoids the paraphyly of Araneidae implied by Kuntner et al. (2019).

1984 ◽  
Vol 8 ◽  
pp. 182-198
Author(s):  
Catherine Badgley

The evolutionary history of humans is well understood in outline, compared to that of many other groups of mammals. But human evolution remains enigmatic in its details, and these are compelling both scientifically and personally because they relate to the biological uniqueness of humans. Humans are placed in the primate family Hominidae, which, in traditional classifications, contains a single living species, Homo sapiens. The closest living relatives of humans are great apes: the chimpanzees Pan paniscus and Pan troglodytes, the gorilla Gorilla gorilla, and the orangutan Pongo pygmaeus. These apes have traditionally been placed in the family Pongidae as the sister group of Hominidae. Living Hominidae and Pongidae, together with Hylobatidae (gibbons) comprise the modern representatives of the primate suborder Hominoidea.


2019 ◽  
Vol 104 (1) ◽  
pp. 69-82 ◽  
Author(s):  
Mónica M. Carlsen ◽  
Thomas B. Croat

This study presents an evaluation of the currently accepted sectional classification of the genus Anthurium Schott (Araceae) in light of a recently published molecular phylogeny for the group. In general, disagreements between these two occur because many diagnostic morphological characters used in the sectional classification turned out to be highly homoplasious within Anthurium, with multiple independent gains or losses of seemingly similar morphologies in distantly related clades. A new sectional classification of Anthurium that more accurately represents species relationships and the evolutionary history of the genus is much needed, and here we propose the first steps toward it. Results from this study suggest that out of the 18 sections and two series recognized in Anthurium, only seven of these groups are monophyletic (i.e., sections Andiphilum (Schott) Croat, Calomystrium (Schott) Engl., Dactylophyllium (Schott) Engl., Leptanthurium (Schott) Engl., Polyphyllium Engl., Tetraspermium (Schott) Engl., and the newly recognized section Multinervia (Croat) Carlsen & Croat, previously a series within section Pachyneurium (Schott) Engl.). All other sections are either not monophyletic or their monophyly could not be accurately tested. A complete revision of the sectional classification of Anthurium will require a more comprehensive taxon sampling and a better supported molecular phylogeny.


Zootaxa ◽  
2021 ◽  
Vol 5047 (3) ◽  
pp. 247-272
Author(s):  
ESPRIT HEESTAND SAUCIER ◽  
SCOTT C. FRANCE ◽  
LES WATLING

Bamboo corals are distinguished from most other octocorals by an articulated skeleton. The nodes are proteinaceous and sclerite-free while the internodes are composed of non-scleritic calcium carbonate. This articulation of the skeleton was thought to be unique and a strong synapomorphy for the family Isididae. Our phylogeny, based on the amplification of mtMutS and 18S, shows an articulating skeleton with sclerite-free nodes has arisen independently at least five times during the evolutionary history of Octocorallia rather than being a synapomorphy characteristic of a monophyletic bamboo coral clade. The family Isididae is currently composed of four subfamilies (Circinisidinae, Isidinae, Keratoisidinae, and Mopseinae). Not only is the family polyphyletic, but our genetic analyses suggest also the subfamily Isidinae is polyphyletic based on current taxonomic classifications, and Mopseinae is not monophyletic. The type, Isis, is found outside of the well-supported Calcaxonia – Pennatulacea clade where the other members of Isididae cluster. The current classification of the family Isididae does not reflect the evolutionary history of an articulated skeleton. To better reflect the evolutionary history of these taxa we propose that three of the four the subfamilies, the genus Isidoides, and genera within the subfamily Isidinae, be elevated to family level to produce a classification with five families with a bamboo-like skeleton: Chelidonisididae, Isididae, Isidoidae, Keratoisididae, and Mopseidae.  


2015 ◽  
Vol 84 (4) ◽  
pp. 275-287 ◽  
Author(s):  
Ole E. Heie

Abstract Several characters of the Lachnidae are discussed, and it is explained why some of them are not plesiomorphies as previously believed, but apomorphies. This applies e.g. to the absence of host alternation in the extant genera, to the short cauda and to the presence of compound eyes in the nymphs and the apterous adults. Some characters are adaptations to attention by ants or ways of feeding. It is concluded that many characters show that the family is relatively young and probably originally had host alternation of the same kind as Aphididae, which is regarded as the sister group. The results of some molecular phylogenetic studies are discussed.


2021 ◽  
Vol 20 (7) ◽  
pp. 911-927
Author(s):  
Lucia Muggia ◽  
Yu Quan ◽  
Cécile Gueidan ◽  
Abdullah M. S. Al-Hatmi ◽  
Martin Grube ◽  
...  

AbstractLichen thalli provide a long-lived and stable habitat for colonization by a wide range of microorganisms. Increased interest in these lichen-associated microbial communities has revealed an impressive diversity of fungi, including several novel lineages which still await formal taxonomic recognition. Among these, members of the Eurotiomycetes and Dothideomycetes usually occur asymptomatically in the lichen thalli, even if they share ancestry with fungi that may be parasitic on their host. Mycelia of the isolates are characterized by melanized cell walls and the fungi display exclusively asexual propagation. Their taxonomic placement requires, therefore, the use of DNA sequence data. Here, we consider recently published sequence data from lichen-associated fungi and characterize and formally describe two new, individually monophyletic lineages at family, genus, and species levels. The Pleostigmataceae fam. nov. and Melanina gen. nov. both comprise rock-inhabiting fungi that associate with epilithic, crust-forming lichens in subalpine habitats. The phylogenetic placement and the monophyly of Pleostigmataceae lack statistical support, but the family was resolved as sister to the order Verrucariales. This family comprises the species Pleostigma alpinum sp. nov., P. frigidum sp. nov., P. jungermannicola, and P. lichenophilum sp. nov. The placement of the genus Melanina is supported as a lineage within the Chaetothyriales. To date, this genus comprises the single species M. gunde-cimermaniae sp. nov. and forms a sister group to a large lineage including Herpotrichiellaceae, Chaetothyriaceae, Cyphellophoraceae, and Trichomeriaceae. The new phylogenetic analysis of the subclass Chaetothyiomycetidae provides new insight into genus and family level delimitation and classification of this ecologically diverse group of fungi.


1990 ◽  
Vol 3 (1) ◽  
pp. 145
Author(s):  
DJ Colgan

This paper is a review of the use of information regarding the presence of duplicate genes and their regulation in systematics. The review concentrates on data derived from protein electrophoresis and restriction fragment length polymorphism analysis. The appearance of a duplication in a subset of a group of species implies that the members of the subset belong to the same clade. Suppression of the duplication may render this clade apparently paraphyletic, but may itself be informative of relations within the lineage through patterns of loss of expression in all, or some tissues, or through restrictions of the formation of functional heteropolymers in polymeric enzymes. Examples are given of studies which have used such information to establish phylogenetic hypotheses at the family level, to identify an auto- or allo-polyploid origin of polyploid species and to determine whether there have been single or multiple origins of such species. The likelihood of homoplasy in the patterns of appearance and regulation of duplicates depends on the molecular basis of the duplication. In particular, the contrast between the expected consequences of tandem duplication and the expression of pseudogenes emphasises the value of determining the mechanism of the original duplication. Many instances of sporadic gene duplication are now known, and polyploidisation is a common event in the evolutionary history of both plants and animals. So the opportunities to discover duplicationrelated characters will arise in many systematic studies. A program is presented to increase the chances that such useful information will be recognisable during the studies.


1993 ◽  
Vol 67 (4) ◽  
pp. 549-570 ◽  
Author(s):  
Bruce S. Lieberman

Phylogenetic parsimony analysis was used to classify the Siegenian–Eifelian “Metacryphaeus group” of the family Calmoniidae. Thirty-eight exoskeletal characters for 16 taxa produced a shortest-length cladogram with a consistency index of 0.49. A classification based on retrieving the structure of this cladogram recognizes nine genera: Typhloniscus Salter, Plesioconvexa n. gen., Punillaspis Baldis and Longobucco, Eldredgeia n. gen., Clarkeaspis n. gen., Malvinocooperella n. gen., Wolfartaspis Cooper, Plesiomalvinella Lieberman, Edgecombe, and Eldredge (used to represent the malvinellid clade), and Metacryphaeus Reed. The malvinellid clade is most closely related to a revised monophyletic Metacryphaeus. Typhloniscus is the basal member of the “Metacryphaeus group,” and the monotypic Wolfartaspis is sister to the clade containing the malvinellids and Metacryphaeus. Six new species are diagnosed: Punillaspis n. sp. A, “Clarkeaspis” gouldi, Clarkeaspis padillaensis, Malvinocooperella pregiganteus, Metacryphaeus curvigena, and Metacryphaeus branisai. Primitively, this group has South African and Andean affinities, and its evolutionary history suggests rapid diversification. In addition, evolutionary patterns in this group, and the distribution of character reversals, call into question certain notions about the nature of adaptive radiations. The distributions of taxa may answer questions about the number of marine transgressive/regressive cycles in the Emsian–Eifelian of the Malvinokaffric Realm.


IAWA Journal ◽  
2011 ◽  
Vol 32 (4) ◽  
pp. 493-519 ◽  
Author(s):  
Anaïs Boura ◽  
Timothée Le Péchon ◽  
Romain Thomas

The Dombeyoideae (Malvaceae) are one of the most diversified groups of plants in the Mascarene Islands. Species of Dombeya Cav., Ruizia Cav. and Trochetia DC. are distributed in almost all parts of the archipelago and show a wide diversity in their growth forms. This study provides the first wood anatomical descriptions of 17 out of the 22 Mascarene species of Dombeyoideae. Their wood anatomy is similar to that of previously described species: wide vessels, presence of both apotracheal and paratracheal parenchyma, and storied structure. In addition, we also found a second wood anatomical pattern with narrower vessels, high vessel frequency and thick-walled fibres. The two aforementioned wood patterns are considered in a phylogenetic context and used to trace the evolutionary history of several wood anatomical features. For example, the pseudoscalariform pit arrangement supports a sister group relationship between Trochetia granulata Cordem. and T. blackburniana Bojer ex Baker and may be a new synapomorphy of the genus Trochetia. Finally, wood variability is evaluated in relation to geographic, climatic and biological data. Despite the juvenile nature of some of the specimens studied, we discuss how the habit, but also factors related to humidity, influence the variability observed in the Mascarene Dombeyoideae wood structure.


2021 ◽  
Author(s):  
Keerthic Aswin ◽  
Srinivasan Ramachandran ◽  
Vivek T Natarajan

AbstractEvolutionary history of coronaviruses holds the key to understand mutational behavior and prepare for possible future outbreaks. By performing comparative genome analysis of nidovirales that contain the family of coronaviruses, we traced the origin of proofreading, surprisingly to the eukaryotic antiviral component ZNFX1. This common recent ancestor contributes two zinc finger (ZnF) motifs that are unique to viral exonuclease, segregating them from DNA proof-readers. Phylogenetic analyses indicate that following acquisition, genomes of coronaviruses retained and further fine-tuned proofreading exonuclease, whereas related families harbor substitution of key residues in ZnF1 motif concomitant to a reduction in their genome sizes. Structural modelling followed by simulation suggests the role of ZnF in RNA binding. Key ZnF residues strongly coevolve with replicase, and the helicase involved in duplex RNA unwinding. Hence, fidelity of replication in coronaviruses is a result of convergent evolution, that enables maintenance of genome stability akin to cellular proofreading systems.


1995 ◽  
Vol 65 (2) ◽  
pp. 79-99
Author(s):  
Sebastián Sanz ◽  
Dirk Platvoet

On several occasions, shrimps belonging to a new species of the genus Typhlatya were collected in a cave in the province of Castellón, Spain. This is the first record of the genus in the Iberian Peninsula. The species is described and the validity, distribution, and zoogeography of the genus, as well as the status of the genus Spelaeocaris, are discussed. Former models for the evolution of the genus Typhlatya and its genus group are reviewed, as well as the system of inner classification of the Atyidae and its biogeographical meaning. For the age and evolution of the genus we developed a new model based on vicariance principles that involves further evolution of each species after the disruption of the ancestral range. This allows new estimations for the age of the genus. Accordingly, we suppose that other proposals, such as recent dispersal through the sea, should be disregarded for this genus. The evolutionary development of this species is discussed in the context of the geological history of the area and the world distribution of the genus, the genus group, and the family.


Sign in / Sign up

Export Citation Format

Share Document