scholarly journals Genome Sequence Resource of Coniella vitis, a Fungal Pathogen Causing Grape White Rot Disease

2020 ◽  
Vol 33 (6) ◽  
pp. 787-789 ◽  
Author(s):  
Shanyue Zhou ◽  
Baohua Li
Keyword(s):  
Genome Sequence ◽  
Fungal Pathogen ◽  
Fungal Pathogens ◽  
Management Strategies ◽  
Draft Genome ◽  
White Rot ◽  
Future Research ◽  
Draft Genome Assembly ◽  
Predominant Pathogen ◽  
Rot Disease

Several fungal pathogens cause grape white rot disease and Coniella vitis is a predominant pathogen in Chinese vineyards. The disease occurs on leaves, vines, and fruit berries, leading to considerable yield losses and even to total destruction of vineyards. Here, we present the first Pacbio and Illumina-sequenced draft genome assembly of C. vitis QNYT13637 and its annotation. This genome sequence provides a unique resource that will be a powerful foundation for future research on exploring virulence-related genes, investigating the pathogenicity mechanism of the pathogen, and, finally, improvement of white rot disease management strategies.

scholarly journals Genome Sequence Resource of the Wide-Host-Range Anthracnose Pathogen Colletotrichum siamense

2019 ◽  
Vol 32 (8) ◽  
pp. 931-934 ◽  
Author(s):  
Yanan Meng ◽  
Mark L. Gleason ◽  
Rong Zhang ◽  
Guangyu Sun
Keyword(s):  
Genome Sequence ◽  
Management Strategies ◽  
Draft Genome ◽  
Ornamental Plants ◽  
Future Research ◽  
Draft Genome Assembly ◽  
American Cranberry ◽  
Colletotrichum Siamense ◽  
Colletotrichum Spp ◽  
Tea Plants

Colletotrichum siamense causes fruit or foliar disease called anthracnose on a variety of plant hosts such as vegetables, fruits, ornamental plants, and others, including chili pepper, apple, American cranberry, mango, orange, papaya, guava, rubber plant, jasmine, coffee berry, and tea plants. Here, we report the first Illumina-sequenced draft genome assembly of C. siamense strain ICMP 18578 and its annotation. This genome sequence provides a unique resource that will be useful for future research on the evolution of Colletotrichum spp. and improvement of anthracnose management strategies.

scholarly journals Improved Draft Genome Sequence of a Monoteliosporic Culture of the Karnal Bunt (Tilletia indica) Pathogen of Wheat

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Anil Kumar ◽  
Pallavi Mishra ◽  
Ranjeet Maurya ◽  
A. K. Mishra ◽  
Vijai K. Gupta ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Karnal Bunt ◽  
Tilletia Indica ◽  
Content Type ◽  
Previous Version ◽  
Draft Genome Assembly

ABSTRACT Karnal bunt of wheat is an internationally quarantined fungal pathogen disease caused by Tilletia indica and affects the international commercial seed trade of wheat. We announce here the first improved draft genome assembly of a monoteliosporic culture of the Tilletia indica fungus, consisting of 787 scaffolds with an approximate total genome size of 31.83 Mbp, which is more accurate and near to complete than the previous version.

scholarly journals Draft Genome Sequence of Cercospora cf. sigesbeckiae, a Causal Agent of Cercospora Leaf Blight on Soybean

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Sebastian Albu ◽  
Sandeep Sharma ◽  
Burton H. Bluhm ◽  
Paul P. Price ◽  
Raymond W. Schneider ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Leaf Blight ◽  
Causal Agent ◽  
Draft Genome Sequence ◽  
Agricultural Commodities

ABSTRACT Cercospora cf. sigesbeckiae is an ascomycete fungal pathogen that infects various plants, including important agricultural commodities, such as soybean. Here, we report the first draft genome sequence and assembly of this pathogen.

Draft genome sequence of the silver pomfret fish, Pampus argenteus

Genome ◽  
2016 ◽  
Vol 59 (1) ◽  
pp. 51-58 ◽  
Author(s):  
Sabah AlMomin ◽  
Vinod Kumar ◽  
Sami Al-Amad ◽  
Mohsen Al-Hussaini ◽  
Talal Dashti ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Management Strategies ◽  
Draft Genome ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Pampus Argenteus ◽  
Genomic Studies ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing ◽  
Silver Pomfret

Silver pomfret, Pampus argenteus, is a fish species from coastal waters. Despite its high commercial value, this edible fish has not been sequenced. Hence, its genetic and genomic studies have been limited. We report the first draft genome sequence of the silver pomfret obtained using a Next Generation Sequencing (NGS) technology. We assembled 38.7 Gb of nucleotides into scaffolds of 350 Mb with N50 of about 1.5 kb, using high quality paired end reads. These scaffolds represent 63.7% of the estimated silver pomfret genome length. The newly sequenced and assembled genome has 11.06% repetitive DNA regions, and this percentage is comparable to that of the tilapia genome. The genome analysis predicted 16 322 genes. About 91% of these genes showed homology with known proteins. Many gene clusters were annotated to protein and fatty-acid metabolism pathways that may be important in the context of the meat texture and immune system developmental processes. The reference genome can pave the way for the identification of many other genomic features that could improve breeding and population-management strategies, and it can also help characterize the genetic diversity of P. argenteus.

scholarly journals Draft Genome Sequence of Bacillus marisflavi CK-NBRI-03, Isolated from Agricultural Soil

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Mayank Gupta ◽  
Puneet Singh Chauhan ◽  
Sudhir K. Sopory ◽  
Sneh L. Singla-Pareek ◽  
Nidhi Adlakha ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Agricultural Soil ◽  
Draft Genome ◽  
Uttar Pradesh ◽  
Draft Genome Sequence ◽  
Positive Bacterium ◽  
Gram Positive ◽  
Content Type ◽  
Draft Genome Assembly

Here, we report the 4.34-Mb draft genome assembly of Bacillus marisflavi CK-NBRI-03 (or P3), a Gram-positive bacterium, with an average G+C content of 48.66%. P3 was isolated from agricultural soil from the Badaun (midwestern plain zone) region of Uttar Pradesh, India.

scholarly journals Draft Genome Sequence ofBacillus subtilisIa1a, a New Strain for Poly-γ-Glutamic Acid and Exopolysaccharide Production

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Mohammad H. A. Ibrahim ◽  
Brady F. Cress ◽  
Robert J. Linhardt ◽  
Mattheos A. G. Koffas ◽  
Richard A. Gross
Keyword(s):  
Bacillus Subtilis ◽  
Glutamic Acid ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Carbon Sources ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Exopolysaccharide Production ◽  
Draft Genome Assembly

We report here the 4.092-Mb high-quality draft genome assembly of a newly isolated poly-γ-glutamic acid–producing strain,Bacillus subtilisIa1a. The genome sequence is considered a critical tool to facilitate the engineering of improved production strains. Exopolysaccharides and many industrially important enzymes can be produced by this new strain utilizing different carbon sources.

scholarly journals Draft Genome Sequence of Branchiibius sp. NY16-3462-2, Isolated from a Mixed Clinical Sample

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Pascal Lapierre ◽  
Tanya A. Halse ◽  
Joseph Shea ◽  
Vincent E. Escuyer ◽  
Kimberlee A. Musser
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Clinical Sample ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Gram Positive ◽  
Draft Genome Assembly ◽  
Gram Positive Cocci

Here, we report the release of a draft genome assembly of a Gram-positive cocci Branchiibius sp. NY16-3462-2 with a high-GC content, sequenced from a mixed clinical sample containing Mycobacterium tuberculosis . This genome is the first publicly available sequence from a representative of the genus Branchiibius .

scholarly journals Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Luciano T. Kishi ◽  
Erica M. Lopes ◽  
Camila C. Fernandes ◽  
Gabriela C. Fernandes ◽  
Lais P. Sacco ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Plant Biomass ◽  
Draft Genome ◽  
Bacterial Consortium ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Draft Genome Assembly ◽  
Reading Frames ◽  
Lignocellulose Biomass

ABSTRACT Chitinophaga comprises microorganisms capable of degrading plant-derived carbohydrates, serving as a source of new tools for the characterization and degradation of plant biomass. Here, we report the draft genome assembly of a Chitinophaga strain with 8.2 Mbp and 7,173 open reading frames (ORFs), isolated from a bacterial consortium that is able to degrade lignocellulose.

scholarly journals Genome Sequence of the Fungus Nannizziopsis barbatae, an Emerging Reptile Pathogen

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Daniel Powell ◽  
Ashley Jones ◽  
Nicola Kent ◽  
Parwinder Kaur ◽  
Ido Bar ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT Nannizziopsis barbatae is an emerging fungal pathogen capable of causing contagious dermatomycosis in reptiles. Here, we report a 31.54-Mb draft genome sequence of an isolate originating from an infected eastern water dragon in Brisbane, Australia.

scholarly journals Genome sequence resource of the causal agent of persimmon anthracnose Colletotrichum horii strain SD010 from China

Plant Disease ◽  
2021 ◽  
Author(s):  
Jie Wang ◽  
Xianmei Yu ◽  
ChengXiang Ai ◽  
Rui Gao
Keyword(s):  
Genome Sequence ◽  
Species Complex ◽  
Genome Structure ◽  
Management Strategies ◽  
Draft Genome ◽  
Population Diversity ◽  
Causal Agent ◽  
Diospyros Kaki ◽  
Host Pathogen Interaction ◽  
The World

Colletotrichum horii is a main causal agent of persimmon (Diospyros kaki Thunb.) anthracnose and distributed widely in persimmon producing areas of the world. Here, we report the first high-quality draft genome sequence of C. horii strain SD010. This will provide a reference for understaning adaptive evolution of genome structure, genes and population diversity among C. gloeosporioides species complex, and also help understand the mechanisms of host-pathogen interaction and improve management strategies of anthracnose.

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