scholarly journals Evaluation of Visible-Near Infrared Reflectance Spectra of Avocado Leaves as a Non-destructive Sensing Tool for Detection of Laurel Wilt

Plant Disease ◽  
2012 ◽  
Vol 96 (11) ◽  
pp. 1683-1689 ◽  
Author(s):  
Sindhuja Sankaran ◽  
Reza Ehsani ◽  
Sharon A. Inch ◽  
Randy C. Ploetz
Keyword(s):  
Discriminant Analysis ◽  
Vegetation Index ◽  
Near Infrared ◽  
Principal Component ◽  
Persea Americana ◽  
Near Infrared Reflectance ◽  
Laurel Wilt ◽  
Linear Discriminant ◽  
Raffaelea Lauricola ◽  
Non Destructive

Laurel wilt, caused by the fungus Raffaelea lauricola, affects the growth, development, and productivity of avocado, Persea americana. This study evaluated the potential of visible-near infrared spectroscopy for non-destructive sensing of this disease. The symptoms of laurel wilt are visually similar to those caused by freeze damage (leaf necrosis). In this work, we performed classification studies with visible-near infrared spectra of asymptomatic and symptomatic leaves from infected plants, as well as leaves from freeze-damaged and healthy plants, both of which were non-infected. The principal component scores computed from principal component analysis were used as input features in four classifiers: linear discriminant analysis, quadratic discriminant analysis (QDA), Naïve-Bayes classifier, and bagged decision trees (BDT). Among the classifiers, QDA and BDT resulted in classification accuracies of higher than 94% when classifying asymptomatic leaves from infected plants. All of the classifiers were able to discriminate symptomatic-infected leaves from freeze-damaged leaves. However, the false negatives mainly resulted from asymptomatic-infected leaves being classified as healthy. Analyses of average vegetation indices of freeze-damaged, healthy (non-infected), asymptomatic-infected, and symptomatic-infected leaves indicated that the normalized difference vegetation index and the simple ratio index were statistically different.

Classification of Apple Using near Infrared Spectroscopy Based on Fuzzy Discriminant Analysis

2013 ◽  
Vol 710 ◽  
pp. 524-528 ◽  
Author(s):  
Xiao Hong Wu ◽  
Xing Xing Wan ◽  
Bin Wu ◽  
Fan Wu
Keyword(s):  
Infrared Spectroscopy ◽  
Discriminant Analysis ◽  
Near Infrared Spectroscopy ◽  
Near Infrared ◽  
Principal Component ◽  
K Nearest Neighbor ◽  
Near Infrared Reflectance ◽  
Linear Discriminant ◽  
Discriminant Information

Classification of apple is an important link in postharvest commercialization processing. To realize the non-destructive, rapid and effective discrimination of apple fruits, the near infrared reflectance spectra of four varieties of apples were collected using near infrared spectroscopy, reduced by principal component analysis (PCA) and used to extract the discriminant information by linear discriminant analysis (LDA), quadratic discriminant analysis (QDA), fuzzy discriminant analysis (FDA) and Foley-Sammon discriminant analysis. Finally k-nearest neighbor finished the classification. The classification results showed that FDA could extract the discriminant information of NIR spectra more effectively, and achieved the highest classification accuracy.

Classification of jaboticaba fruits at three maturity stages using NIRS and LDA

2016 ◽  
Vol 8 (11) ◽  
pp. 2533-2538 ◽  
Author(s):  
Rosangela Câmara Costa ◽  
Luis C. Cunha Junior ◽  
Thayara Bittencourt Morgenstern ◽  
Gustavo Henrique de Almeida Teixeira ◽  
Kássio Michell Gomes de Lima
Keyword(s):  
Near Infrared ◽  
Principal Component ◽  
Reflectance Spectroscopy ◽  
Infrared Reflectance ◽  
Near Infrared Reflectance Spectroscopy ◽  
Near Infrared Reflectance ◽  
Linear Discriminant ◽  
Maturity Stages ◽  
Non Destructive

This study proposes a rapid and non-destructive method of jaboticaba [Myrciaria cauliflora (Mart.) O. Berg] fruit classification at three maturity stages using Near-Infrared Reflectance Spectroscopy (NIRS) combined with principal component analysis-linear discriminant analysis (PCA-LDA).

scholarly journals A fast and low-cost approach to quality control of alcohol-based hand sanitizer using portable near infrared spectrometer and chemometrics

2021 ◽  
pp. 096703352098731
Author(s):  
Adenilton C da Silva ◽  
Lívia PD Ribeiro ◽  
Ruth MB Vidal ◽  
Wladiana O Matos ◽  
Gisele S Lopes
Keyword(s):  
Quality Control ◽  
Discriminant Analysis ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Partial Least Square ◽  
Least Square ◽  
Chemical Components ◽  
Linear Discriminant ◽  
Hand Sanitizer

The use of alcohol-based hand sanitizers is recommended as one of several strategies to minimize contamination and spread of the COVID-19 disease. Current reports suggest that the virucidal potential of ethanol occurs at concentrations close to 70%. Traditional methods of verifying the ethanol concentration in such products invite potential errors due to the viscosity of chemical components or may be prohibitively expensive to undertake in large demand. Near infrared (NIR) spectroscopy and chemometrics have already been used for the determination of ethanol in other matrices and present an alternative fast and reliable approach to quality control of alcohol-based hand sanitizers. In this study, a portable NIR spectrometer combined with classification chemometric tools, i.e., partial least square discriminant analysis (PLS–DA) and linear discriminant analysis with successive algorithm projection (SPA–LDA) were used to construct models to identify conforming and non-conforming commercial and laboratory synthesized hand sanitizer samples. Principal component analysis (PCA) was applied in an exploratory data study. Three principal components accounted for 99% of data variance and demonstrate clustering of conforming and non-conforming samples. The PLS–DA and SPA–LDA classification models presented 77 and 100% of accuracy in cross/internal validation respectively and 100% of accuracy in the classification of test samples. A total of 43% commercial samples evaluated using the PLS–DA and SPA–LDA presented ethanol content non-conforming for hand sanitizer gel. These results indicate that use of NIR spectroscopy and chemometrics is a promising strategy, yielding a method that is fast, portable, and reliable for discrimination of alcohol-based hand sanitizers with respect to conforming and non-conforming ethanol concentrations.

Application of Visible-Near Infrared Spectra Technique Based on to the Non-Destructive Measurement of the Salmon Quality

2014 ◽  
Vol 926-930 ◽  
pp. 961-964
Author(s):  
Jiao Jiao Yin
Keyword(s):  
Infrared Spectra ◽  
Near Infrared ◽  
Principal Component ◽  
Support Vector ◽  
Analysis Method ◽  
Linear Discriminant ◽  
Near Infrared Spectra ◽  
Destructive Measurement ◽  
Non Destructive

Because the reflectivity of astaxanthin vary in different bands (mainly 400nm-600nm), so we use the visible-near infrared spectra technique to irradiate the salmon. Because in daily life, people grade the salmon flesh with a color card. In this paper, we first use principal component analysis to reduce the dimensionality of the spectral data of salmon, then use linear discriminant analysis method, least squares support vector machine classification method to distinguish the flesh quality. The correct classification rates are 60%and73.3%. The results show that we can use visible – near infrared spectra to distinguish the quality of the salmon which doesn’t be dissected.

Classification of freshwater fish species by linear discriminant analysis based on near infrared reflectance spectroscopy

2017 ◽  
Vol 25 (1) ◽  
pp. 54-62 ◽  
Author(s):  
Hao Lv ◽  
Wenjie Xu ◽  
Juan You ◽  
Shanbai Xiong
Keyword(s):  
Discriminant Analysis ◽  
Linear Discriminant Analysis ◽  
Freshwater Fish ◽  
Near Infrared ◽  
Reflectance Spectroscopy ◽  
Infrared Reflectance ◽  
Near Infrared Reflectance Spectroscopy ◽  
Near Infrared Reflectance ◽  
Linear Discriminant ◽  
Infrared Reflectance Spectroscopy

Near infrared reflectance spectroscopy was used to discriminate different species of freshwater fish samples. Samples from seven freshwater fish species of the family Cyprinidae (black carp ( Mylopharyngodon piceus), grass carp ( Ctenopharyngodon idellus), silver carp ( Hypophthalmichthys molitrix), bighead carp ( Aristichthys nobilis), common carp ( Cyprinus carpio), crucian ( Carassius auratus), and bream ( Parabramis pekinensis)) were scanned by near infrared reflectance spectroscopy from 1000 nm to 1799 nm. Linear discriminant analysis models were built for the classification of species. We inspected the effect of partial least square, principal component analysis, competitive adaptive reweighted sampling, and fast Fourier transform on linear discriminant analysis. The results showed that the dimension reduction methods worked very well for this example. Linear discriminant analysis models which were combined with principal component analysis and fast Fourier transform could classify accurately all the samples under multiplicative scatter correction pre-processing. According to the loadings in principal component analysis, spectra wavelengths 1000, 1001, 1154, 1208, 1284, 1288, 1497, 1665, and 1770 nm were selected as effective wavelengths in linear discriminant analysis. The discriminant analysis was simplified by using effective wavelengths as independent variables in a linear discriminant analysis model. This study indicated that linear discriminant analysis combined with near infrared reflectance spectroscopy could be an effective strategy for the classification of freshwater fish species.

Portable vibrational spectroscopic methods can discriminate between grass-fed and grain-fed beef

2021 ◽  
pp. 096703352110495
Author(s):  
Cassius EO Coombs ◽  
Robert R Liddle ◽  
Luciano A González
Keyword(s):  
Discriminant Analysis ◽  
Near Infrared ◽  
Prediction Models ◽  
Nir Spectroscopy ◽  
Consumer Confidence ◽  
Spectroscopic Methods ◽  
Marbling Score ◽  
Near Infrared Reflectance ◽  
Linear Discriminant ◽  
Beef Steak

The present study analysed the ability for portable near infrared reflectance (NIR) and Raman spectroscopy sensors to differentiate between grass-fed and grain-fed beef. Scans were made on lean and fat surfaces of 108 beef steak samples labelled as grass-fed ( n = 54) and grain-fed ( n = 54), with partial least squares discriminant analysis (PLS-DA) and linear discriminant analysis (LDA) used to develop discrimination models which were tested on independent datasets. Furthermore, PLS-DA was used to predict visual marbling score and days on feed (DOF). The NIR spectra accurately discriminated between grass- and grain-fed beef on both fat (91.7%, n = 92) and lean (88.5%, n = 96), as did Raman (fat 95.2%, n = 82; lean 69.6%, n = 68). Fat scanning using NIR spectroscopy moderately predicted DOF (r2val = 0.53), though Raman and NIR spectroscopy lean prediction models for DOF and marbling were less precise (r2val < 0.50). It can be concluded that portable NIR and Raman spectrometers can be used successfully to differentiate grass-fed from grain-fed beef and therefore aid retail and consumer confidence.

scholarly journals Near-Infrared Spectroscopy as a Diagnostic Tool for Distinguishing between Normal and Malignant Colorectal Tissues

2015 ◽  
Vol 2015 ◽  
pp. 1-7 ◽  
Author(s):  
Hui Chen ◽  
Zan Lin ◽  
Lin Mo ◽  
Tong Wu ◽  
Chao Tan
Keyword(s):  
Discriminant Analysis ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Projection Algorithm ◽  
Diagnostic Model ◽  
Full Spectrum ◽  
Analytical Strategy ◽  
Linear Discriminant ◽  
Parsimonious Model

Cancer diagnosis is one of the most important tasks of biomedical research and has become the main objective of medical investigations. The present paper proposed an analytical strategy for distinguishing between normal and malignant colorectal tissues by combining the use of near-infrared (NIR) spectroscopy with chemometrics. The successive projection algorithm-linear discriminant analysis (SPA-LDA) was used to seek a reduced subset of variables/wavenumbers and build a diagnostic model of LDA. For comparison, the partial least squares-discriminant analysis (PLS-DA) based on full-spectrum classification was also used as the reference. Principal component analysis (PCA) was used for a preliminary analysis. A total of 186 spectra from 20 patients with partial colorectal resection were collected and divided into three subsets for training, optimizing, and testing the model. The results showed that, compared to PLS-DA, SPA-LDA provided more parsimonious model using only three wavenumbers/variables (4065, 4173, and 5758 cm−1) to achieve the sensitivity of 84.6%, 92.3%, and 92.3% for the training, validation, and test sets, respectively, and the specificity of 100% for each subset. It indicated that the combination of NIR spectroscopy and SPA-LDA algorithm can serve as a potential tool for distinguishing between normal and malignant colorectal tissues.

Rapid Discrimination of Apple Varieties via Near-Infrared Reflectance Spectroscopy and Fast Allied Fuzzy C-Means Clustering

2015 ◽  
Vol 11 (1) ◽  
pp. 23-30 ◽  
Author(s):  
Xiaohong Wu ◽  
Bin Wu ◽  
Jun Sun ◽  
Min Li
Keyword(s):  
Discriminant Analysis ◽  
Linear Discriminant Analysis ◽  
Clustering Algorithm ◽  
Near Infrared ◽  
Infrared Reflectance ◽  
Near Infrared Reflectance ◽  
Linear Discriminant ◽  
Fuzzy C Means ◽  
Apple Varieties ◽  
Possibilistic Clustering

Abstract Discrimination of apple varieties plays an important role in apple post-harvest commercial processing. A fast allied fuzzy c-means (FAFCM) clustering algorithm was proposed to classify the apple varieties using near-infrared reflectance (NIR) spectroscopy technology and orthogonal linear discriminant analysis (OLDA) which was used as feature extraction and dimensionality reduction method. Our classification method: the high-dimensional NIR data were reduced to three-dimensional data by OLDA at first, and the FAFCM clustering algorithm was implemented to classify the reduced data. Furthermore, the principal component analysis (PCA) and linear discriminant analysis (LDA) combined with k-nearest neighbor classifier (KNNC), fuzzy c-means (FCM) clustering and unsupervised possibilistic clustering algorithm (UPCA), formed the other four classification methods to classify apple samples in comparison with our proposed method. The experimental results showed that FAFCM achieved the best performance of classification.

Application of Multivariate Analyses to NIR Spectra of Gelatinized Starch

1992 ◽  
Vol 46 (9) ◽  
pp. 1420-1425 ◽  
Author(s):  
D. Bertrand ◽  
C. N. G. Scotter
Keyword(s):  
Discriminant Analysis ◽  
Near Infrared ◽  
Multivariate Analyses ◽  
Principal Component Regression ◽  
Principal Component ◽  
Effect Of Temperature ◽  
Linear Discriminant ◽  
Starch Gelatinization ◽  
Gelatinized Starch ◽  
The Relationship

This paper describes an approach for studying collections of near-infrared spectra by using multivariate analyses. The method is illustrated with the use of two sets of spectra of gelatinized starch, recorded in the transmission mode between 650 and 1235 nm. The first set consisted of 99 spectra of partly gelatinized samples (from 24.5 to 100% gelatinization). Application of principal component analysis (PCA) made it possible to identify an outlying sample and to identify the importance of spectral variations due to the effect of scattering. Hence, it was possible to eliminate the scatter variations. From principal component regression (PCR), it was shown that the relationship between corrected spectra and gelatinization was not linear. Discriminant analysis was applied to seven classes of starch gelatinization. Only five samples out of 98 were incorrectly identified. The second set of samples was designed for studying the effect of temperature variation on the spectra of fully gelatinized starch samples. It was possible to show from PCR that the relationship between the spectra and temperature was linear. The “spectral patterns” assessed from discriminant analysis of starch gelatinization and from the PCR of temperature were compared.

scholarly journals Moving-window bis-correlation coefficients method for visible and near-infrared spectral discriminant analysis with applications

2018 ◽  
Vol 11 (02) ◽  
pp. 1850005 ◽  
Author(s):  
Lijun Yao ◽  
Weiqun Xu ◽  
Tao Pan ◽  
Jiemei Chen
Keyword(s):  
Discriminant Analysis ◽  
Near Infrared ◽  
Large Population ◽  
Correlation Coefficients ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Moving Window ◽  
Linear Discriminant ◽  
Transgenic Sugarcane ◽  
Polynomial Formula

The moving-window bis-correlation coefficients (MW-BiCC) was proposed and employed for the discriminant analysis of transgenic sugarcane leaves and [Formula: see text]-thalassemia with visible and near-infrared (Vis–NIR) spectroscopy. The well-performed moving-window principal component analysis linear discriminant analysis (MW-PCA–LDA) was also conducted for comparison. A total of 306 transgenic (positive) and 150 nontransgenic (negative) leave samples of sugarcane were collected and divided to calibration, prediction, and validation. The diffuse reflection spectra were corrected using Savitzky–Golay (SG) smoothing with first-order derivative ([Formula: see text]), third-degree polynomial ([Formula: see text]) and 25 smoothing points ([Formula: see text]). The selected waveband was 736–1054[Formula: see text]nm with MW-BiCC, and the positive and negative validation recognition rates ([Formula: see text]_REC[Formula: see text], [Formula: see text]_REC[Formula: see text] were 100%, 98.0%, which achieved the same effect as MW-PCA–LDA. Another example, the 93 [Formula: see text]-thalassemia (positive) and 148 nonthalassemia (negative) of human hemolytic samples were collected. The transmission spectra were corrected using SG smoothing with [Formula: see text], [Formula: see text] and [Formula: see text]. Using MW-BiCC, many best wavebands were selected (e.g., 1116–1146, 1794–1848 and 2284–2342[Formula: see text]nm). The [Formula: see text]_REC[Formula: see text] and [Formula: see text]_REC[Formula: see text] were both 100%, which achieved the same effect as MW-PCA–LDA. Importantly, the BiCC only required calculating correlation coefficients between the spectrum of prediction sample and the average spectra of two types of calibration samples. Thus, BiCC was very simple in algorithm, and expected to obtain more applications. The results first confirmed the feasibility of distinguishing [Formula: see text]-thalassemia and normal control samples by NIR spectroscopy, and provided a promising simple tool for large population thalassemia screening.

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