scholarly journals Carbon Source-Dependent Effects of Anaerobic Soil Disinfestation on Soil Microbiome and Suppression of Rhizoctonia solani AG-5 and Pratylenchus penetrans

2016 ◽  
Vol 106 (9) ◽  
pp. 1015-1028 ◽  
Author(s):  
Shashika S. Hewavitharana ◽  
Mark Mazzola
Keyword(s):  
Carbon Source ◽  
Rhizoctonia Solani ◽  
Application Rate ◽  
Disease Suppression ◽  
Soil Microbiome ◽  
Pratylenchus Penetrans ◽  
Root Infection ◽  
Soil Suppressiveness ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation

The effect of carbon source on efficacy of anaerobic soil disinfestation (ASD) toward suppression of apple root infection by Rhizoctonia solani AG-5 and Pratylenchus penetrans was examined. Orchard grass (GR), rice bran (RB), ethanol (ET), composted steer manure (CM), and Brassica juncea seed meal (SM) were used as ASD carbon inputs, with plant assays conducted in natural and pasteurized orchard soils. Subsequent studies investigated the effect of GR application rate used in ASD on control of these pathogens. In general, apple root infection by R. solani AG-5 was significantly lower in ET, GR, RB, and SM ASD treatments compared with the control. Among different ASD treatments, apple seedling growth was significantly greater when GR or SM was used as the carbon input relative to all other ASD treatments. R. solani AG-5 DNA abundance was significantly reduced in all ASD treatments, regardless of amendment type, compared with the control. In independent experiments, ASD-GR was consistently superior to ASD-CM for limiting pathogen activity in soils. ASD treatment with a grass input rate of 20 t ha−1 provided superior suppression of P. penetrans but grass application rate did not affect ASD efficacy in control of R. solani AG-5. The soil microbiome from ASD-GR-treated soils was clearly distinct from the control and ASD-CM-treated soils. In contrast, composition of the microbiome from control and ASD-CM-treated soils could not be differentiated. Comparative results from pasteurized and nonpasteurized soils suggest that there is potential for GR based ASD treatment to recruit microbial elements that persist over the anaerobic phase of soil incubation, which may functionally contribute to disease suppression. When ASD was conducted with GR, microbial diversity was markedly reduced relative to the control or ASD-CM soil suggesting that this parameter, typically associated with system resilience, was not instrumental to the function of ASD-induced soil suppressiveness.

scholarly journals Synergy of Anaerobic Soil Disinfestation and Trichoderma spp. in Rhizoctonia Root Rot Suppression

2021 ◽  
Vol 5 ◽  
Author(s):  
Ram B. Khadka ◽  
Sally A. Miller
Keyword(s):  
Carbon Source ◽  
Rhizoctonia Solani ◽  
Wheat Bran ◽  
Root Rot ◽  
Carbon Sources ◽  
Chicken Manure ◽  
Treated Soil ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Rhizoctonia Root Rot

Potential synergy between anaerobic soil disinfestation (ASD) and Trichoderma spp. in suppression of Rhizoctonia root rot in radish was evaluated. A split-plot design with three replications was used; main plots were Trichoderma harzianum T22, Trichoderma asperellum NT25 and a non-Trichoderma control. Subplots were ASD carbon sources wheat bran, molasses, chicken manure, and mustard greens and two non-amended controls: anaerobic (covered and flooded) and aerobic (not covered or flooded). Carbon sources and Rhizoctonia solani inoculant were mixed with soil, placed in pots, and flooded, followed by drenching Trichoderma spore suspensions and sealing the pots in zip-lock bags. After 3 weeks, bags were removed, soil was aired for 1 week and radish “SSR-RR-27” was seeded. Rhizoctonia root rot severity and incidence were lowest in radish plants grown in ASD-treated soil amended with wheat bran, molasses, or mustard greens across all Trichoderma treatments. Disease severity was lower in radish plants treated with NT25 than with T22 or the non-Trichoderma control across all ASD treatments, and in radish grown in ASD-treated soil amended with wheat bran plus NT25 compared to ASD-wheat bran or NT25 alone. Rhizoctonia solani populations were significantly reduced by ASD treatment regardless of carbon source, while Trichoderma populations were not affected by ASD treatment with the exception of ASD-mustard greens. The interactions of either Trichoderma isolate and ASD with most carbon sources were additive, while T22 with ASD-molasses and NT25 with ASD–wheat bran interactions were synergistic in reducing disease severity. One interaction, T22 with ASD-chicken manure was antagonistic. Enhancement of ASD efficacy in suppressing soilborne diseases such as Rhizoctonia root rot by additional soil amendment with Trichoderma spp. during the process appears to be dependent on both Trichoderma isolate and ASD carbon source.

scholarly journals Analysis of Environmental Variables and Carbon Input on Soil Microbiome, Metabolome and Disease Control Efficacy in Strawberry Attributable to Anaerobic Soil Disinfestation

2021 ◽  
Vol 9 (8) ◽  
pp. 1638
Author(s):  
Shashika S. Hewavitharana ◽  
Emmi Klarer ◽  
Joji Muramoto ◽  
Carol Shennan ◽  
Mark Mazzola
Keyword(s):  
Disease Control ◽  
Fusarium Wilt ◽  
Environmental Variables ◽  
Incubation Temperature ◽  
Soil Microbiome ◽  
Charcoal Rot ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Input Type ◽  
Incubation Duration

Charcoal rot and Fusarium wilt, caused by Macrophomina phaseolina and Fusarium oxysporum f. sp. fragariae, respectively, are major soil-borne diseases of strawberry that have caused significant crop losses in California. Anaerobic soil disinfestation has been studied as an industry-level option to replace soil fumigants to manage these serious diseases. Studies were conducted to discern whether Gramineae carbon input type, incubation temperature, or incubation duration influences the efficacy of this disease control tactic. In experiments conducted using ‘low rate’ amendment applications at moderate day/night temperatures (24/18 °C), and carbon inputs (orchard grass, wheat, and rice bran) induced an initial proliferation and subsequent decline in soil density of the Fusarium wilt pathogen. This trend coincided with the onset of anaerobic conditions and a corresponding generation of various anti-fungal compounds, including volatile organic acids, hydrocarbons, and sulfur compounds. Generation of these metabolites was associated with increases in populations of Clostridium spp. Overall, carbon input and incubation temperature, but not incubation duration, significantly influenced disease suppression. All Gramineae carbon inputs altered the soil microbiome and metabolome in a similar fashion, though the timing and maximum yield of specific metabolites varied with input type. Fusarium wilt and charcoal rot suppression were superior when anaerobic soil disinfestation was conducted using standard amendment rates of 20 t ha−1 at elevated temperatures combined with a 3-week incubation period. Findings indicate that anaerobic soil disinfestation can be further optimized by modulating carbon source and incubation temperature, allowing the maximum generation of antifungal toxic volatile compounds. Outcomes also indicate that carbon input and environmental variables may influence treatment efficacy in a target pathogen-dependent manner which will require pathogen-specific optimization of treatment protocols.

scholarly journals Induction of Soil Suppressiveness Against Rhizoctonia solani by Incorporation of Dried Plant Residues into Soil

2006 ◽  
Vol 96 (12) ◽  
pp. 1372-1379 ◽  
Author(s):  
Masahiro Kasuya ◽  
Andriantsoa R. Olivier ◽  
Yoko Ota ◽  
Motoaki Tojo ◽  
Hitoshi Honjo ◽  
...  
Keyword(s):  
Rhizoctonia Solani ◽  
Mycelial Growth ◽  
Inhibitory Effect ◽  
Volatile Substance ◽  
Disease Suppression ◽  
Plant Residues ◽  
Infested Soil ◽  
Antagonistic Bacteria ◽  
Damping Off ◽  
Soil Suppressiveness

Suppressive effects of soil amendment with residues of 12 cultivars of Brassica rapa on damping-off of sugar beet were evaluated in soils infested with Rhizoctonia solani. Residues of clover and peanut were tested as noncruciferous controls. The incidence of damping-off was significantly and consistently suppressed in the soils amended with residues of clover, peanut, and B. rapa subsp. rapifera ‘Saori’, but only the volatile substance produced from water-imbibed residue of cv. Saori exhibited a distinct inhibitory effect on mycelial growth of R. solani. Nonetheless, disease suppression in such residue-amended soils was diminished or nullified when antibacterial antibiotics were applied to the soils, suggesting that proliferation of antagonistic bacteria resident to the soils were responsible for disease suppression. When the seed (pericarps) colonized by R. solani in the infested soil without residues were replanted into the soils amended with such residues, damping-off was suppressed in all cases. In contrast, when seed that had been colonized by microorganisms in the soils containing the residues were replanted into the infested soil, damping-off was not suppressed. The evidence indicates that the laimosphere, but not the spermosphere, is the site for the antagonistic microbial interaction, which is the chief principle of soil suppressiveness against Rhizoctonia damping-off.

scholarly journals Temporal Responses of Microbial Communities to Anaerobic Soil Disinfestation

2019 ◽  
Vol 80 (1) ◽  
pp. 191-201 ◽  
Author(s):  
Amisha T. Poret-Peterson ◽  
Nada Sayed ◽  
Nathaniel Glyzewski ◽  
Holly Forbes ◽  
Enid T. González-Orta ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Rice Bran ◽  
Grape Pomace ◽  
Soil Microbiome ◽  
Tomato Pomace ◽  
Soil Redox ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Red Grape ◽  
Over Time

AbstractAnaerobic soil disinfestation (ASD) is an organic amendment-based management tool for controlling soil-borne plant diseases and is increasingly used in a variety of crops. ASD results in a marked decrease in soil redox potential and other physicochemical changes, and a turnover in the composition of the soil microbiome. Mechanisms of ASD-mediated pathogen control are not fully understood, but appear to depend on the carbon source used to initiate the process and involve a combination of biological (i.e., release of volatile organic compounds) and abiotic (i.e., lowered pH, release of metal ions) factors. In this study, we examined how the soil microbiome changes over time in response to ASD initiated with rice bran, tomato pomace, or red grape pomace as amendments using growth chamber mesocosms that replicate ASD-induced field soil redox conditions. Within 2 days, the soil microbiome rapidly shifted from a diverse assemblage of taxa to being dominated by members of the Firmicutes for all ASD treatments, whereas control mesocosms maintained diverse and more evenly distributed communities. Rice bran and tomato pomace amendments resulted in microbial communities with similar compositions and trajectories that were different from red grape pomace communities. Quantitative PCR showed nitrogenase gene abundances were higher in ASD communities and tended to increase over time, suggesting the potential for altering soil nitrogen availability. These results highlight the need for temporal and functional studies to understand how pathogen suppressive microbial communities assemble and function in ASD-treated soils.

scholarly journals Anaerobic Soil Disinfestation Reduces Viability of Sclerotinia sclerotiorum and S. minor Sclerotia and Root-Knot Nematodes in Muck Soils

2020 ◽  
Vol 110 (4) ◽  
pp. 795-804
Author(s):  
Andres D. Sanabria-Velazquez ◽  
Anna L. Testen ◽  
Ram B. Khadka ◽  
Zhe Liu ◽  
Fuqing Xu ◽  
...  
Keyword(s):  
Carbon Source ◽  
Sclerotinia Sclerotiorum ◽  
Wheat Bran ◽  
Carbon Sources ◽  
Ethanol Solution ◽  
Meloidogyne Hapla ◽  
Root Knot Nematodes ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Muck Soil

Experiments were conducted to evaluate potential functional and mechanistic differences in the suppression of Sclerotinia sclerotiorum and S. minor and root-knot nematodes in muck soils by anaerobic soil disinfestation (ASD) using different carbon source amendments. Volatile compounds produced during ASD in muck soil amended with molasses, wheat bran, or mustard greens at 20.2 Mg/ha or a 2% ethanol solution significantly reduced the mycelial growth and number of sclerotia produced by both Sclerotinia spp. compared with the anaerobic control. In amended soils, acetic and butyric acids were detected in concentrations that reduced the viability of sclerotia of both pathogens. Higher concentrations of carbon dioxide were observed in ASD-treated soils, regardless of the amendment, than in the nonamended anaerobic control. Only amendment with wheat bran did not increase the production of methane gas during ASD compared with the controls. Meloidogyne hapla survival was completely suppressed in soils treated with ASD regardless of carbon source. Field trials were conducted in Ohio muck soil to assess survival of sclerotia of both Sclerotinia spp. The viability of sclerotia of both Sclerotinia spp. was significantly reduced in soil subjected to ASD amended with wheat bran (20.2 Mg/ha), molasses (10.1 Mg/ha), or wheat bran (20.2 Mg/ha) plus molasses (10.1 Mg/ha) compared with the controls. A consistent negative correlation between soil reduction and viability of sclerotia of both pathogens was observed. Wheat bran and molasses are both widely available amendments that can be used as ASD carbon sources for the management of soilborne pathogens in muck soils.

scholarly journals Carbon Source and Soil Origin Shape Soil Microbiomes and Tomato Soilborne Pathogen Populations During Anaerobic Soil Disinfestation

2018 ◽  
Vol 2 (3) ◽  
pp. 138-150 ◽  
Author(s):  
Anna L. Testen ◽  
Sally A. Miller
Keyword(s):  
Carbon Source ◽  
Wheat Bran ◽  
Root Rot ◽  
Bacterial Communities ◽  
Soilborne Diseases ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Soil Bacterial Communities ◽  
Soil Origin ◽  
Soil Bacterial

Soilborne disease complexes are an emerging constraint in protected culture tomato production systems in the Midwestern United States. Diseases in these complexes include Verticillium wilt (Verticillium dahliae), black dot root rot (Colletotrichum coccodes), corky root rot (Pyrenochaeta lycopersici), and root knot (Meloidogyne spp.). Anaerobic soil disinfestation (ASD) may be a viable, environmentally benign strategy for managing these complexes. Soils from two farms in Ohio were used to determine the impacts of ASD, using wheat bran, molasses, or ethanol as carbon sources, on soilborne diseases and soil bacterial communities. ASD with wheat bran or ethanol amendments led to significantly reduced tomato root rot severity, while nematode galling damage was significantly reduced following ASD with any carbon source compared with nontreated controls. When ethanol was used as a carbon source in ASD, the colonization of tomato roots by P. lycopersici and C. coccodes was observed less frequently than in control roots. A high throughput sequencing approach was used to characterize soil bacterial communities following ASD. Carbon source and soil origin influenced the composition of bacterial communities in soils treated with ASD. Bacterial community diversity decreased following ASD with wheat bran in all soils tested and following ASD with ethanol in soils from one farm. The abundance of bacteria in the phylum Firmicutes generally increased significantly following ASD, while the abundance of those in the phyla Acidobacteria, Actinobacteria, Chloroflexi, and Plantomycetes generally decreased following ASD. These findings provide insight into the impacts of ASD on microbial communities and soilborne diseases and will be used to optimize ASD as a tool for Midwestern vegetable growers.

Use of a summer cover crop as a partial carbon source for anaerobic soil disinfestation in coastal California

2020 ◽  
pp. 37-44 ◽  
Author(s):  
J. Muramoto ◽  
C. Shennan ◽  
M. Mazzola ◽  
T. Wood ◽  
E. Miethke ◽  
...  
Keyword(s):  
Carbon Source ◽  
Cover Crop ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation

scholarly journals Effects of Anaerobic Soil Disinfestation on Sclerotinia sclerotiorum in Paraguay

2019 ◽  
Vol 20 (1) ◽  
pp. 50-60
Author(s):  
Andres D. Sanabria-Velazquez ◽  
Anna L. Testen ◽  
Guillermo A. Enciso ◽  
Laura C. Soilan ◽  
Sally A. Miller
Keyword(s):  
Carbon Source ◽  
Sclerotinia Sclerotiorum ◽  
Wheat Bran ◽  
Carbon Sources ◽  
Significant Negative Correlation ◽  
Field Trials ◽  
Plastic Mulch ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Reducing Conditions

The effects of anaerobic soil disinfestation (ASD) on Sclerotinia sclerotiorum sclerotia viability was tested in four field trials in Paraguay. Plots were amended with wheat bran (20.2 Mg/ha), molasses (10.1 Mg/ha), or wheat bran (20.2 Mg/ha) plus molasses (10.1 Mg/ha), saturated with water, and covered with black plastic mulch for 3 weeks. Control plots were not amended but were saturated and either covered (anaerobic control) or maintained uncovered (aerobic control). Tubes painted with iron oxide paint were placed in soils to assess soil reducing conditions. Sclerotia were buried 6 cm deep in treated and control soils along with temperature data loggers. After 3 weeks, the viability of sclerotia was significantly lower in all ASD-treated soils (4 to 52%) compared with the aerobic control soil (100%), regardless of the carbon source used. Sclerotial viability was also significantly reduced compared with anaerobic controls at three sites, depending on the carbon source used. A significant negative correlation between soil reducing conditions and sclerotia viability was observed at all sites. Wheat bran and molasses are widely available and inexpensive in Paraguay, and ASD with these carbon sources provides smallholder South American vegetable farmers with a new option for sustainable management of Sclerotinia and potentially other soilborne pathogens.

Sign in / Sign up

Export Citation Format

Share Document