scholarly journals Dynamic expression profiles during development of placodes in the embryonic chicken eye

2020 ◽  
Vol 34 (S1) ◽  
pp. 1-1
Author(s):  
Tamara Anne Franz-Odendaal ◽  
Jennifer Giffin
2015 ◽  
Vol 29 (4) ◽  
pp. 627-642 ◽  
Author(s):  
Céline Zimmermann ◽  
Isabelle Stévant ◽  
Christelle Borel ◽  
Béatrice Conne ◽  
Jean-Luc Pitetti ◽  
...  

Abstract Sertoli cells (SCs), the only somatic cells within seminiferous tubules, associate intimately with developing germ cells. They not only provide physical and nutritional support but also secrete factors essential to the complex developmental processes of germ cell proliferation and differentiation. The SC transcriptome must therefore adapt rapidly during the different stages of spermatogenesis. We report comprehensive genome-wide expression profiles of pure populations of SCs isolated at 5 distinct stages of the first wave of mouse spermatogenesis, using RNA sequencing technology. We were able to reconstruct about 13 901 high-confidence, nonredundant coding and noncoding transcripts, characterized by complex alternative splicing patterns with more than 45% comprising novel isoforms of known genes. Interestingly, roughly one-fifth (2939) of these genes exhibited a dynamic expression profile reflecting the evolving role of SCs during the progression of spermatogenesis, with stage-specific expression of genes involved in biological processes such as cell cycle regulation, metabolism and energy production, retinoic acid synthesis, and blood-testis barrier biogenesis. Finally, regulatory network analysis identified the transcription factors endothelial PAS domain-containing protein 1 (EPAS1/Hif2α), aryl hydrocarbon receptor nuclear translocator (ARNT/Hif1β), and signal transducer and activator of transcription 1 (STAT1) as potential master regulators driving the SC transcriptional program. Our results highlight the plastic transcriptional landscape of SCs during the progression of spermatogenesis and provide valuable resources to better understand SC function and spermatogenesis and its related disorders, such as male infertility.


PLoS ONE ◽  
2012 ◽  
Vol 7 (7) ◽  
pp. e38275 ◽  
Author(s):  
Jayant Avva ◽  
Michael C. Weis ◽  
R. Michael Sramkoski ◽  
Sree N. Sreenath ◽  
James W. Jacobberger

Science ◽  
2018 ◽  
Vol 362 (6411) ◽  
pp. eaau6348 ◽  
Author(s):  
Kiara C. Eldred ◽  
Sarah E. Hadyniak ◽  
Katarzyna A. Hussey ◽  
Boris Brenerman ◽  
Ping-Wu Zhang ◽  
...  

The mechanisms underlying specification of neuronal subtypes within the human nervous system are largely unknown. The blue (S), green (M), and red (L) cones of the retina enable high-acuity daytime and color vision. To determine the mechanism that controls S versus L/M fates, we studied the differentiation of human retinal organoids. Organoids and retinas have similar distributions, expression profiles, and morphologies of cone subtypes. S cones are specified first, followed by L/M cones, and thyroid hormone signaling controls this temporal switch. Dynamic expression of thyroid hormone–degrading and –activating proteins within the retina ensures low signaling early to specify S cones and high signaling late to produce L/M cones. This work establishes organoids as a model for determining mechanisms of human development with promising utility for therapeutics and vision repair.


2022 ◽  
Author(s):  
Wenge Liu ◽  
Jin Luo ◽  
Qiaoyun Ren ◽  
Qilin Wang ◽  
Jing Li ◽  
...  

Abstract Background: Ticks are important parasites that cause more diseases than most other animal parasites. Haemaphysalis longicornis is used as an experimental animal model for the study of three-host ticks due to its special life cycle and easy maintenance in the laboratory and in its reproduction. The life cycle of H. longicornis goes through a tightly regulated life cycle to adapt to the changing host and environment, and these stages of transition are also accompanied by proteome changes in the body. Methods: In this study, the aim was to use the isobaric tags for relative and absolute quantification (iTRAQ) technique to systematically describe and analyze the dynamic expression of protein and the molecular basis of the proteome of H. longicornis in seven differential developmental stages (eggs, unfed larvae, fed larvae, unfed nymphs, fed nymphs unfed adults, and fed adults). Results: A total of 2,059 proteins were identified, and their expression profiles were classified at different developmental stages. In addition, it was found that tissue and organ development-related proteins and metabolism-related proteins showed that they were involved in different physiological processes throughout the life cycle through the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of the differentially expressed proteins (DEPs). More importantly, we found that the upregulated proteins of fed adult ticks were mainly related to yolk absorption, degradation, and ovarian development-related proteins. The abundance of the cuticle proteins in the unfed stages were significantly higher compared with those of the fed ticks in the previous stages. Conclusions: In short, the protein spectrum changes identified in this study provide a reference proteome for future studies of tick functional proteins and provide candidate targets for elucidating tick development and developing new tick control strategies.


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