scholarly journals Range-wide parallel climate-associated genomic clines in Atlantic salmon

2017 ◽  
Vol 4 (11) ◽  
pp. 171394 ◽  
Author(s):  
Nicholas W. Jeffery ◽  
Ryan R. E. Stanley ◽  
Brendan F. Wringe ◽  
Javier Guijarro-Sabaniel ◽  
Vincent Bourret ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Atlantic Salmon ◽  
North Atlantic ◽  
Large Scale ◽  
Intraspecific Diversity ◽  
Clinal Variation ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
The North ◽  
The North Atlantic

Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allele frequency for 134 populations of North American and European Atlantic salmon ( Salmo salar ). We detected 84 (4.74%) and 195 (11%) loci showing clinal patterns in North America and Europe, respectively, with 12 clinal loci in common between continents. Clinal single nucleotide polymorphisms were evenly distributed across the salmon genome and logistic regression revealed significant associations with latitude and seasonal temperatures, particularly average spring temperature in both continents. Loci displaying parallel clines were associated with several metabolic and immune functions, suggesting a potential basis for climate-associated adaptive differentiation. These climate-based clines collectively suggest evidence of large-scale environmental associated differences on either side of the North Atlantic. Our results support patterns of parallel evolution on both sides of the North Atlantic, with evidence of both similar and divergent underlying genetic architecture. The identification of climate-associated genomic clines illuminates the role of selection and demographic processes on intraspecific diversity in this species and provides a context in which to evaluate the impacts of climate change.

Seasonal Predictability of Wintertime mid-latitude Cyclonic Activity over the North Atlantic and Europe

2021 ◽  
Author(s):  
Alvise Aranyossy ◽  
Sebastian Brune ◽  
Lara Hellmich ◽  
Johanna Baehr
Keyword(s):  
North Atlantic ◽  
Large Scale ◽  
Jet Stream ◽  
Cyclonic Activity ◽  
Max Planck ◽  
Pressure System ◽  
Wind Speeds ◽  
Average Lifespan ◽  
The North ◽  
The North Atlantic

<p>We analyse the connections between the wintertime North Atlantic Oscillation (NAO), the eddy-driven jet stream with the mid-latitude cyclonic activity over the North Atlantic and Europe. We investigate, through the comparison against ECMWF ERA5 and hindcast simulations from the Max Planck Institute Earth System Model (MPI-ESM), the potential for enhancement of the seasonal prediction skill of the Eddy Kinetic Energy (EKE) by accounting for the connections between large-scale climate and the regional cyclonic activity. Our analysis focuses on the wintertime months (December-March) in the 1979-2019 period, with seasonal predictions initialized every November 1st. We calculate EKE from wind speeds at 250 hPa, which we use as a proxy for cyclonic activity. The zonal and meridional wind speeds are bandpass filtered with a cut-off at 3-10 days to fit with the average lifespan of mid-latitude cyclones. </p><p>Preliminary results suggest that in ERA5, major positive anomalies in EKE, both in quantity and duration, are correlated with a northern position of the jet stream and a positive phase of the NAO. Apparently, a deepened Icelandic low-pressure system offers favourable conditions for mid-latitude cyclones in terms of growth and average lifespan. In contrast, negative anomalies in EKE over the North Atlantic and Central Europe are associated with a more equatorward jet stream, these are also linked to a negative phase of the NAO.  Thus, in ERA5, the eddy-driven jet stream and the NAO play a significant role in the spatial and temporal distribution of wintertime mid-latitude cyclonic activity over the North Atlantic and Europe. We extend this connection to the MPI-ESM hindcast simulations and present an analysis of their predictive skill of EKE for wintertime months.</p>

scholarly journals Climate impacts on multidecadal <i>p</i>CO<sub>2</sub> variability in the North Atlantic: 1948–2009

2015 ◽  
Vol 12 (17) ◽  
pp. 15223-15244
Author(s):  
M. L. Breeden ◽  
G. A. McKinley
Keyword(s):  
North Atlantic ◽  
Large Scale ◽  
Dissolved Inorganic Carbon ◽  
Atlantic Multidecadal Oscillation ◽  
Climate Impacts ◽  
Co2 Uptake ◽  
Subpolar Gyre ◽  
The North ◽  
The North Atlantic

Abstract. The North Atlantic is the most intense region of ocean CO2 uptake. Here, we investigate multidecadal timescale variability of the partial pressure CO2 (pCO2) that is due to the natural carbon cycle using a regional model forced with realistic climate and pre-industrial atmospheric pCO2 for 1948–2009. Large-scale patterns of natural pCO2 variability are primarily associated with basin-averaged sea surface temperature (SST) that, in turn, is composed of two parts: the Atlantic Multidecadal Oscillation (AMO) and a long-term positive SST trend. The North Atlantic Oscillation (NAO) drives a secondary mode of variability. For the primary mode, positive AMO and the SST trend modify pCO2 with different mechanisms and spatial patterns. Warming with the positive AMO increases subpolar gyre pCO2, but there is also a significant reduction of dissolved inorganic carbon (DIC) due primarily to reduced vertical mixing. The net impact of positive AMO is to reduce pCO2 in the subpolar gyre. Through direct impacts on SST, the net impacts of positive AMO is to increase pCO2 in the subtropical gyre. From 1980 to present, long-term SST warming has amplified AMO impacts on pCO2.

scholarly journals Lagrangian formation pathways of moist anomalies in the trade-wind region during the dry season: two case studies from EUREC<sup>4</sup>A

2021 ◽  
Author(s):  
Leonie Villiger ◽  
Heini Wernli ◽  
Maxi Boettcher ◽  
Martin Hagen ◽  
Franziska Aemisegger
Keyword(s):  
Long Range ◽  
North Atlantic ◽  
Large Scale ◽  
Cold Front ◽  
Trade Wind ◽  
Long Range Transport ◽  
The North ◽  
Range Transport ◽  
The North Atlantic ◽  
The Tropics

Abstract. Shallow clouds in the trade-wind region over the North Atlantic contribute substantially to the global radiative budget. In the vicinity of the Caribbean island Barbados, they appear in different mesoscale organisation patterns with distinct net cloud radiative effects (CRE). Cloud formation processes in this region are typically controlled by the prevailing large-scale subsidence. However, occasionally weather systems from remote origin cause significant disturbances. This study investigates the complex cloud-circulation interactions during the field campaign EUREC4A (Elucidate the Couplings Between Clouds, Convection and Circulation) from 16 January to 20 February 2020, using a combination of Eulerian and Lagrangian diagnostics. Based on observations and ERA5 reanalyses, we identify the relevant processes and characterise the formation pathways of two moist anomalies above the Barbados Cloud Observatory (BCO), one in the lower (~1000–650 hPa) and one in the middle troposphere (~650–300 hPa). These moist anomalies are associated with strongly negative CRE values and with contrasting long-range transport processes from the extratropics and the tropics, respectively. The low-level moist anomaly is characterised by an unusually thick cloud layer, high precipitation totals and a strongly negative CRE. Its formation is connected to an “extratropical dry intrusion” (EDI) that interacts with a trailing cold front. A quasi-climatological (2010–2020) analysis reveals that EDIs lead to different conditions at the BCO depending on how they interact with the associated cold front. Based on this climatology, we discuss the relevance of the strong large-scale forcing by EDIs for the low-cloud patterns near the BCO and the related CRE. The second case study about the mid-tropospheric moist anomaly is associated with an extended and persistent mixed-phase shelf cloud and the lowest daily CRE value observed during the campaign. Its formation is linked to “tropical mid-level detrainment” (TMD), which refers to detrainment from tropical deep convection near the melting layer. The quasi-climatological analysis shows that TMDs consistently lead to mid-tropospheric moist anomalies over the BCO and that the detrainment height controls the magnitude of the anomaly. However, no systematic relationship was found between the amplitude of this mid-tropospheric moist anomaly and the CRE at the BCO. Overall, this study reveals the important impact of the long-range transport, driven by dynamical processes either in the extratropics or the tropics, on the variability of the vertical structure of moisture and clouds, and on the resulting CRE in the North Atlantic winter trades.

scholarly journals DNA Melting Analysis for Detection of Single Nucleotide Polymorphisms

2001 ◽  
Vol 47 (4) ◽  
pp. 635-644 ◽  
Author(s):  
Robert H Lipsky ◽  
Chiara M Mazzanti ◽  
Joseph G Rudolph ◽  
Ke Xu ◽  
Gopal Vyas ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Large Scale ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Dna Melting ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Efficient System ◽  
Gradient Gel Electrophoresis ◽  
Melting Analysis ◽  
Scale Detection

Abstract Background: Several methods for detection of single nucleotide polymorphisms (SNPs; e.g., denaturing gradient gel electrophoresis and denaturing HPLC) are indirectly based on the principle of differential melting of heteroduplex DNA. We present a method for detecting SNPs that is directly based on this principle. Methods: We used a double-stranded DNA-specific fluorescent dye, SYBR Green I (SYBR) in an efficient system (PE 7700 Sequence Detector) in which DNA melting was controlled and monitored in a 96-well plate format. We measured the decrease in fluorescence intensity that accompanied DNA duplex denaturation, evaluating the effects of fragment length, dye concentration, DNA concentration, and sequence context using four naturally occurring polymorphisms (three SNPs and a single-base deletion/insertion). Results: DNA melting analysis (DM) was used successfully for variant detection, and we also discovered two previously unknown SNPs by this approach. Concentrations of DNA amplicons were readily monitored by SYBR fluorescence, and DNA amplicon concentrations were highly reproducible, with a CV of 2.6%. We readily detected differences in the melting temperature between homoduplex and heteroduplex fragments 15–167 bp in length and differing by only a single nucleotide substitution. Conclusions: The efficiency and sensitivity of DMA make it highly suitable for the large-scale detection of sequence variants.

scholarly journals Inferring marine distribution of Canadian and Irish Atlantic salmon (Salmo salar L.) in the North Atlantic from tissue concentrations of bio-accumulated caesium 137

2007 ◽  
Vol 64 (2) ◽  
pp. 394-404 ◽  
Author(s):  
Aaron D. Spares ◽  
Jeffery M. Reader ◽  
Michael J. W. Stokesbury ◽  
Tom McDermott ◽  
Lubomir Zikovsky ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Salmo Salar ◽  
North Atlantic ◽  
Tissue Concentration ◽  
Eastern Canada ◽  
Tissue Concentrations ◽  
Atlantic Salmon Salmo Salar ◽  
The North ◽  
The North Atlantic ◽  
High Concentrations

AbstractSpares, A.D., Reader, J.M., Stokesbury, M.J.W., McDermott, T., Zikovsky, L., Avery, T.S., and Dadswell, M.J. 2007. Inferring marine distribution of Canadian and Irish Atlantic salmon (Salmo salar L.) in the North Atlantic from tissue concentrations of bio-accumulated caesium 137. – ICES Journal of Marine Science, 64: 394–404. Atlantic salmon returning from marine migrations to eastern Canada and western Ireland during 2002 and 2003 were analysed for tissue concentrations of bio-accumulated caesium 137 (137Cs). Salmon from Canadian and Irish waters demonstrated concentrations (0.20 ± 0.14 Bq kg−1 and 0.19 ± 0.09 Bq kg−1, mean ± s.d., respectively) suggesting similar oceanic feeding distributions during migration. Canadian aquaculture escapees had a similar mean tissue concentration (0.28 ± 0.22 Bq kg−1), suggesting migration with wild salmon. However, significantly higher concentrations in 1-sea-winter (1SW) escapees (0.43 ± 0.25 Bq kg−1) may alternatively suggest feeding within local estuaries. High concentrations in some Canadian 1SW salmon indicated trans-Atlantic migration. Low concentrations of Canadian multi-sea-winter (MSW) salmon suggested a feeding distribution in the Labrador and Irminger Seas before homeward migration, because those regions have the lowest surface water 137Cs levels. Estimates of wild Canadian and Irish salmon feeding east of the Faroes (∼8°W) were 14.2% and 10.0% (1SW, 24.7% and 11.5%; MSW, 2.9% and 0.0%), respectively. We propose that most anadromous North Atlantic salmon utilize the North Atlantic Gyre for marine migration and should be classified as a single trans-Atlantic straddling stock.

scholarly journals A Look at the Relationship between the Large-Scale Tropospheric Static Stability and the Tropical Cyclone Maximum Intensity

2020 ◽  
Vol 33 (3) ◽  
pp. 959-975
Author(s):  
Alexandria Downs ◽  
Chanh Kieu
Keyword(s):  
Tropical Cyclone ◽  
Negative Correlation ◽  
North Atlantic ◽  
Large Scale ◽  
Static Stability ◽  
Maximum Intensity ◽  
Northwestern Pacific ◽  
The North ◽  
The Future ◽  
The North Atlantic

AbstractVarious modeling and observational studies have suggested that tropical cyclone (TC) intensity tends to increase in the future due to projected warmer sea surface temperature (SST). This study examines the effects of the tropospheric stratification that could potentially offset the direct increase of TC intensity associated with the warmer SST. Using reanalysis datasets and TC records in the northwestern Pacific and the North Atlantic basins, it is shown that there exists a consistently negative correlation between the annually averaged TC intensity and the basinwide average of the tropospheric static stability. This negative correlation is more robust in the northwestern Pacific basin when using the TC lifetime maximum intensity but is somewhat less significant in the North Atlantic basin. Further separation of the troposphere into a lower (1000–500 hPa) and an upper layer (500–200 hPa) reveals that it is the upper-tropospheric static stability that plays a more dominant role in governing the TC intensity variability. The negating effects of a stable troposphere on TC intensity as found in this study suggest a partial offset of the projected increase in the TC potential intensity due to the future warmer SST. Thus, the tropospheric static stability is one of the key large-scale factors that need to be properly taken into account in studies of long-term TC intensity change.

scholarly journals Heat transport pathways into the Arctic and their connections to surface air temperatures

2019 ◽  
Vol 19 (6) ◽  
pp. 3927-3937 ◽  
Author(s):  
Daniel Mewes ◽  
Christoph Jacobi
Keyword(s):  
North Atlantic ◽  
North Pacific ◽  
Large Scale ◽  
The Arctic ◽  
Positive Temperature ◽  
Transport Pathways ◽  
Temperature Anomalies ◽  
The North ◽  
The North Atlantic ◽  
The North Pacific

Abstract. Arctic amplification causes the meridional temperature gradient between middle and high latitudes to decrease. Through this decrease the large-scale circulation in the midlatitudes may change and therefore the meridional transport of heat and moisture increases. This in turn may increase Arctic warming even further. To investigate patterns of Arctic temperature, horizontal transports and their changes in time, we analysed ERA-Interim daily winter data of vertically integrated horizontal moist static energy transport using self-organizing maps (SOMs). Three general transport pathways have been identified: the North Atlantic pathway with transport mainly over the northern Atlantic, the North Pacific pathway with transport from the Pacific region, and the Siberian pathway with transport towards the Arctic over the eastern Siberian region. Transports that originate from the North Pacific are connected to negative temperature anomalies over the central Arctic. These North Pacific pathways have been becoming less frequent during the last decades. Patterns with origin of transport in Siberia are found to have no trend and show cold temperature anomalies north of Svalbard. It was found that transport patterns that favour transport through the North Atlantic into the central Arctic are connected to positive temperature anomalies over large regions of the Arctic. These temperature anomalies resemble the warm Arctic–cold continents pattern. Further, it could be shown that transport through the North Atlantic has been becoming more frequent during the last decades.

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