scholarly journals Resource acquisition and allocation traits in symbiotic rhizobia with implications for life-history outside of legume hosts

2018 ◽  
Vol 5 (12) ◽  
pp. 181124 ◽  
Author(s):  
Katherine E. Muller ◽  
R. Ford Denison
Keyword(s):  
Root Nodules ◽  
Natural Populations ◽  
Heritable Variation ◽  
Free Living ◽  
Term Survival ◽  
Individual Level ◽  
Dividing Cells ◽  
Term Functions ◽  
Microbial Symbionts

Resources that microbial symbionts obtain from hosts may enhance fitness during free-living stages when resources are comparatively scarce. For rhizobia in legume root nodules, diverting resources from nitrogen fixation to polyhydroxybutyrate (PHB) has been discussed as a source of host–symbiont conflict. Yet, little is known about natural variation in PHB storage and its implications for rhizobial evolution. We therefore measured phenotypic variation in natural rhizobia populations and investigated how PHB might contribute to fitness in the free-living stage. We found that natural populations of rhizobia from Glycine max and Chamaecrista fasciculata had substantial, heritable variation in PHB acquisition during symbiosis. A model simulating temperature-dependent metabolic activity showed that the observed range of stored PHB per cell could support survival for a few days, for active cells, or over a century for sufficiently dormant cells. Experiments with field-isolated Bradyrhizobium in starvation culture suggest PHB is partitioned asymmetrically in dividing cells, consistent with individual-level bet-hedging previously demonstrated in E. meliloti . High-PHB isolates used more PHB over the first month, yet still retained more PHB for potential long-term survival in a dormant state. These results suggest that stored resources like PHB may support both short-term and long-term functions that contribute to fitness in the free-living stage.

scholarly journals B Chromosomes in Free-Living Flatworms of the Genus Macrostomum (Platyhelminthes, Macrostomorpha)

2021 ◽  
Vol 22 (24) ◽  
pp. 13617
Author(s):  
Kira S. Zadesenets ◽  
Nikolay B. Rubtsov
Keyword(s):  
Genome Duplication ◽  
Natural Populations ◽  
B Chromosome ◽  
Laboratory Culture ◽  
B Chromosomes ◽  
Free Living ◽  
Transmission Rates ◽  
Supernumerary Chromosomes

B chromosomes (Bs) or supernumerary chromosomes are extra chromosomes in the species karyotype that can vary in its copy number. Bs are widespread in eukaryotes. Usually, the Bs of specimens collected from natural populations are the object of the B chromosome studies. We applied another approach analyzing the Bs in animals maintained under the laboratory conditions as lines and cultures. In this study, three species of the Macrostomum genus that underwent a recent whole-genome duplication (WGD) were involved. In laboratory lines of M. lignano and M. janickei, the frequency of Bs was less than 1%, while in the laboratory culture of M. mirumnovem, it was nearer 30%. Their number in specimens of the culture varied from 1 to 14. Mosaicism on Bs was discovered in parts of these animals. We analyzed the distribution of Bs among the worms of the laboratory cultures during long-term cultivation, the transmission rates of Bs in the progeny obtained from crosses of worms with different numbers of Bs, and from self-fertilized isolated worms. The DNA content of the Bs in M. mirumnovem was analyzed with the chromosomal in situ suppression (CISS) hybridization of microdissected DNA probes derived from A chromosomes (As). Bs mainly consisted of repetitive DNA. The cytogenetic analysis also revealed the divergence and high variation in large metacentric chromosomes (LMs) containing numerous regions enriched for repeats. The possible mechanisms of the appearance and evolution of Bs and LMs in species of the Macrostomum genus were also discussed.

scholarly journals Sex ratio and morphological characteristics of rufous gnateaters, Conopophaga lineata (Aves, Passeriformes) in Atlantic forest fragments

2009 ◽  
Vol 99 (1) ◽  
pp. 115-119 ◽  
Author(s):  
Gisele P. M. Dantas ◽  
Fabrício R. Santos ◽  
Miguel Ângelo Marini
Keyword(s):  
Sex Ratio ◽  
Morphological Changes ◽  
Anthropogenic Activities ◽  
Natural Populations ◽  
Morphological Characteristics ◽  
Atlantic Rain Forest ◽  
Forest Fragments ◽  
Natural Habitats ◽  
Term Survival

Unequal sex ratios lead to the loss of genetic variability, decreasing the viability of populations in the long term. Anthropogenic activities often disturb the natural habitats and can cause alterations in sex ratio and morphological characteristics of several species. Forest fragmentation is a major conservation concern, so that understanding its effects in natural populations is essential. In this study, we evaluated the sex ratio and the morphological characteristics of Rufous Gnateaters (Conopophaga lineata (Wied, 1831)) in small and large forest fragments in Minas Gerais, Brazil. Birds (n = 89) were sexed by plumage characteristics and molecular markers. The molecular analysis showed that plumage is not a totally reliable method for sexing Rufous Gnateaters. We observed that sex ratio did not differ between large and small forest fragments, but birds in small fragments had larger wings and tarsus. Wing and tarsus changes may affect the movement ability of individuals within and among forest fragments. In conclusion, Rufous Gnateaters have been able to survive in both small and large Atlantic rain forest fragments without altering their sex ratio, but morphological changes can be prejudicial to their long term survival.

scholarly journals Honeybee colonies compensate for pesticide-induced effects on royal jelly composition and brood survival with increased brood production

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Matthias Schott ◽  
Maximilian Sandmann ◽  
James E. Cresswell ◽  
Matthias A. Becher ◽  
Gerrit Eichner ◽  
...  
Keyword(s):  
Royal Jelly ◽  
Brood Production ◽  
Initiation Rate ◽  
Term Survival ◽  
Individual Level ◽  
Sublethal Doses ◽  
Dose Dependent Increase ◽  
Dose Dependent ◽  
Colony Level

AbstractSublethal doses of pesticides affect individual honeybees, but colony-level effects are less well understood and it is unclear how the two levels integrate. We studied the effect of the neonicotinoid pesticide clothianidin at field realistic concentrations on small colonies. We found that exposure to clothianidin affected worker jelly production of individual workers and created a strong dose-dependent increase in mortality of individual larvae, but strikingly the population size of capped brood remained stable. Thus, hives exhibited short-term resilience. Using a demographic matrix model, we found that the basis of resilience in dosed colonies was a substantive increase in brood initiation rate to compensate for increased brood mortality. However, computer simulation of full size colonies revealed that the increase in brood initiation led to severe reductions in colony reproduction (swarming) and long-term survival. This experiment reveals social regulatory mechanisms on colony-level that enable honeybees to partly compensate for effects on individual level.

scholarly journals Effects of Salinity and Temperature on Long-Term Survival of the Eel Pathogen Vibrio vulnificus Biotype 2 (Serovar E)

1999 ◽  
Vol 65 (3) ◽  
pp. 1117-1126 ◽  
Author(s):  
Ester Marco-Noales ◽  
Elena G. Biosca ◽  
Carmen Amaro
Keyword(s):  
Aquatic Ecosystem ◽  
Vibrio Vulnificus ◽  
Membrane Vesicles ◽  
Extracellular Material ◽  
Free Living ◽  
Term Survival ◽  
Optimal Salinity ◽  
Long Term Survival ◽  
Cellular Lysis

ABSTRACT Vibrio vulnificus biotype 2 (serovar E) is a primary eel pathogen. In this study, we performed long-term survival experiments to investigate whether the aquatic ecosystem can be a reservoir for this bacterium. We have used microcosms containing water of different salinities (ranging from 0.3 to 3.8%) maintained at three temperatures (12, 25, and 30°C). Temperature and salinity significantly affected long-term survival: (i) the optimal salinity for survival was 1.5%; (ii) lower salinities reduced survival, although they were nonlethal; and (ii) the optimal temperature for survival was dependent on the salinity (25°C for microcosms at 0.3 and 0.5% and 12°C for microcosms at 1.5 to 3.8%). In the absence of salts, culturability dropped to zero in a few days, without evidence of cellular lysis. Under optimal conditions of salinity and temperature, the bacterium was able to survive in the free-living form for at least 3 years. The presence of a capsule on the bacterial cell seemed to confer an advantage, since the long-term survival rate of opaque variants was significantly higher than that of translucent ones. Long-term-starved cells maintained their infectivity for eels (as determined by both intraperitoneal and immersion challenges) and mice. Examination under the microscope showed that (i) the capsule was maintained, (ii) the cell size decreased, (iii) the rod shape changed to coccuslike along the time of starvation, and (iv) membrane vesicles and extracellular material were occasionally produced. In conclusion, V. vulnificus biotype 2 follows a survival strategy similar to that of biotype 1 of this species in response to starvation conditions in water. Moreover, the aquatic ecosystem is one of its reservoirs.

scholarly journals Extrapolating Survival from Randomized Trials Using External Data: A Review of Methods

2016 ◽  
Vol 37 (4) ◽  
pp. 377-390 ◽  
Author(s):  
Christopher Jackson ◽  
John Stevens ◽  
Shijie Ren ◽  
Nick Latimer ◽  
Laura Bojke ◽  
...  
Keyword(s):  
Survival Data ◽  
Randomized Trials ◽  
Research Priorities ◽  
Future Research ◽  
Term Survival ◽  
Individual Level ◽  
External Data ◽  
The United Kingdom ◽  
Term Data

This article describes methods used to estimate parameters governing long-term survival, or times to other events, for health economic models. Specifically, the focus is on methods that combine shorter-term individual-level survival data from randomized trials with longer-term external data, thus using the longer-term data to aid extrapolation of the short-term data. This requires assumptions about how trends in survival for each treatment arm will continue after the follow-up period of the trial. Furthermore, using external data requires assumptions about how survival differs between the populations represented by the trial and external data. Study reports from a national health technology assessment program in the United Kingdom were searched, and the findings were combined with “pearl-growing” searches of the academic literature. We categorized the methods that have been used according to the assumptions they made about how the hazards of death vary between the external and internal data and through time, and we discuss the appropriateness of the assumptions in different circumstances. Modeling choices, parameter estimation, and characterization of uncertainty are discussed, and some suggestions for future research priorities in this area are given.

The development and overwintering survival of free-living larvae of Haemonchus contortus in Sweden

2005 ◽  
Vol 79 (4) ◽  
pp. 373-379 ◽  
Author(s):  
K. Troell ◽  
P. Waller ◽  
J. Höglund
Keyword(s):  
Haemonchus Contortus ◽  
Practical Significance ◽  
Southern Sweden ◽  
Free Living ◽  
Term Survival ◽  
Commercial Flock ◽  
Long Time ◽  
Overwintering Survival ◽  
Eggs And Larvae

AbstractFive complimentary studies were undertaken with the overall aim to examine the ability of free-living stages of Haemonchus contortus to over-winter and tolerate cold stress. Two studies deal with the development and long-term survival of eggs and infective larvae of two geographically different isolates (Kenya and Sweden). Eggs and larvae were monitored in climatic chambers at temperatures that fluctuated daily between −1°C and 15°C, or at constant temperatures of 5°C and 15°C. The development from egg to larvae was dependent on temperatures over 5°C. The long time survival was favoured at lower temperatures. Furthermore, the overwintering capacity of the free-living stages of these isolates was estimated under Swedish field conditions. Two groups of lambs were experimentally infected with different isolates, and kept separated on previously ungrazed plots. In early May the following year, two parasite-naive tracer lambs were turned out on each of the plots to estimate the pick up of overwintered larvae. This experiment was replicated in central and southern Sweden. In addition, two experiments were performed in 2003 on pasture previously grazed by naturally infected sheep. One trial was on a pasture in southern Sweden grazed by a commercial flock, where extreme numbers of H. contortus were found towards the end of the grazing season 2002. The other study was on a pasture plot in central Sweden grazed by a hobby flock in 2002, where three of six lambs died due to haemonchiasis. Overwintered H. contortus was recorded on three of four experimental sites. Worm burdens were in all instances extremely low. No differences in development and survival were found between the isolates. Consequently, overwintering on pasture is of no practical significance in the transmission of H. contortus between grazing-seasons in Sweden.

scholarly journals Evolutionary Mechanisms of Persistence and Diversification of a Calicivirus within Endemically Infected Natural Host Populations

2006 ◽  
Vol 81 (4) ◽  
pp. 1961-1971 ◽  
Author(s):  
Karen P. Coyne ◽  
Rosalind M. Gaskell ◽  
Susan Dawson ◽  
Carol J. Porter ◽  
Alan D. Radford
Keyword(s):  
Host Population ◽  
Evolutionary Mechanisms ◽  
Term Survival ◽  
Variable Regions ◽  
Individual Level ◽  
Relative Contribution ◽  
Different Strains ◽  
The Individual ◽  
Mechanisms Of Persistence

ABSTRACT In order to understand the evolutionary mechanisms of persistence and diversification within the Caliciviridae, we have been exploiting endemic infection of feline calicivirus within five geographically distinct household groups of cats. By sequencing immunodominant and variable regions of the capsid gene, we identified the relative contribution of the different evolutionary processes employed by the virus to ensure its long-term survival in the host population. Such strategies included progressive evolution of a given variant of a strain through mutation accumulation within an individual, sequential reinfection with either a variant of the same strain or with a different strain, and mixed infection. Recombination between different strains in this study has been reported in detail elsewhere (K. P. Coyne et al., J. Gen. Virol. 87:921-926, 2006). Here, we provide evidence to suggest that true long-term persistent infection in individuals is relatively rare, with the majority of apparent viral carriers undergoing a combination of progressive evolution and cyclical reinfection. Progressive evolution at the individual level and variant reinfection at both the individual and population levels were associated with positive selection. Two measures of evolution rate were determined; for a virus progressively evolving within an individual (1.32 × 10−2 to 2.64 × 10−2 substitutions per nucleotide per year, i.e., no transmission) and for a strain circulating within a population (3.84 × 10−2 to 4.56 × 10−2 substitutions per nucleotide per year, i.e., including transmission). Reiteration of both progressive evolution and variant reinfection appeared to lead to a gradual increase in the diversity of a given strain of virus, both in the individual and in the population, until eventually new strains emerged.

scholarly journals B Chromosomes in Free-Living Flatworms of the Genus Macrostomum (Platyhelminthes, Macrostomorpha)

2021 ◽  
Author(s):  
Kira S. Zadesenets ◽  
Nikolay B. Rubtsov
Keyword(s):  
Genome Duplication ◽  
Natural Populations ◽  
Laboratory Culture ◽  
B Chromosomes ◽  
Free Living ◽  
Transmission Rates ◽  
Supernumerary Chromosomes ◽  
Laboratory Cultures

B chromosomes (Bs) or supernumerary chromosomes are extra chromosomes in the species karyotype that can vary in their copy number. Bs are widespread. Usually, the Bs of specimens collected from natural populations are involved in studies. We applied another approach analyzing the Bs in animals of laboratory cultures. In this study, three species of the Macrostomum genus that underwent a recent whole-genome duplication (WGD) were involved. In laboratory lines of M. lignano and M. janickei, the frequency of Bs was less than 1%, while in the laboratory culture of M. mirumnovem, it was nearer 30%. Their number in specimens of the culture varied from 1 to 14. Mosaicism on Bs was discovered in parts of these animals. We analyzed the distribution of Bs among the worms of the laboratory cultures during long-term cultivation, the transmission rates of Bs in the progeny obtained from crosses of worms with different numbers of Bs, and from self-fertilized isolated worms. The DNA content of the Bs in M. mirumnovem was analyzed with the chromosomal in situ suppression (CISS) hybridization of microdissected DNA probes derived from A chromosomes (As). Bs mainly consisted of repetitive DNA. The cytogenetic analysis also revealed the divergence and high variation in large metacentric chromosomes (LMs) containing numerous regions enriched for repeats. The possible mechanisms of the appearance and evolution of Bs and LMs in species of the Macrostomum genus were also discussed.

Caspases and apoptosis

2002 ◽  
Vol 38 ◽  
pp. 9-19 ◽  
Author(s):  
Guy S Salvesen
Keyword(s):  
Cysteine Proteases ◽  
Signalling Pathways ◽  
Term Survival ◽  
Mature Adult ◽  
Intracellular Signalling Pathways ◽  
Adult Cell ◽  
Caspase Family ◽  
Cell Fragments ◽  
Pro Inflammatory Cytokines

The ability of metazoan cells to undergo programmed cell death is vital to both the precise development and long-term survival of the mature adult. Cell deaths that result from engagement of this programme end in apoptosis, the ordered dismantling of the cell that results in its 'silent' demise, in which packaged cell fragments are removed by phagocytosis. This co-ordinated demise is mediated by members of a family of cysteine proteases known as caspases, whose activation follows characteristic apoptotic stimuli, and whose substrates include many proteins, the limited cleavage of which causes the characteristic morphology of apoptosis. In vertebrates, a subset of caspases has evolved to participate in the activation of pro-inflammatory cytokines, and thus members of the caspase family participate in one of two very distinct intracellular signalling pathways.

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