Mechanisms of sodium transport in bacteria

In some bacteria, an Na + circuit is an important link between exergonic and endergonic membrane reactions. The physiological importance of Na + ion cycling is described in detail for three different bacteria. Klebsiella pneumoniae fermenting citrate pumps Na + outwards by oxaloacetate decarboxylase and uses the Na + ion gradient thus established for citrate uptake. Another possible function of the Na + gradient may be to drive the endergonic reduction of NAD + with ubiquinol as electron donor. In Vibrio alginolyticus , an Na + gradient is established by the NADH: ubiquinone oxidoreductase segment of the respiratory chain; the Na + gradient drives solute uptake, flagellar motion and possibly ATP synthesis. In Propionigenium modestum , ATP biosynthesis is entirely dependent on the Na + ion gradient established upon decarboxylation of methylmalonyl-CoA. The three Na + -translocating enzymes, oxaloacetate decarboxylase of Klebsiella pneumoniae , NADH: ubiquinone oxidoreductase of Vibrio alginolyticus and ATPase ( F 1 F 0 ) of Propionigenium modestum have been isolated and studied with respect to structure and function. Oxaloacetate decarboxylase consists of a peripheral subunit (α), that catalyses the carboxyl transfer from oxaloacetate to enzyme-bound biotin. The subunits β and γ are firmly embedded in the membrane and catalyse the decarboxylation of the carboxybiotin enzyme, coupled to Na + transport. A two-step mechanism has also been demonstrated for the respiratory Na + pump. Semiquinone radicals are first formed with the electrons from NADH; subsequently, these radicals dismutate in an Na + -dependent reaction to quinone and quinol. The ATPase of P. modestum is closely related in its structure to the F 1 F 0 ATPase of E. coli , but uses Na + as the coupling ion. A specific role of protons in the ATP synthesis mechanism is therefore excluded.

2020 ◽  
Vol 295 (36) ◽  
pp. 12739-12754
Author(s):  
Takahiro Masuya ◽  
Yuki Sano ◽  
Hinako Tanaka ◽  
Nicole L. Butler ◽  
Takeshi Ito ◽  
...  

The Na+-pumping NADH-ubiquinone (UQ) oxidoreductase (Na+-NQR) is present in the respiratory chain of many pathogenic bacteria and is thought to be a promising antibiotic target. Whereas many details of Na+-NQR structure and function are known, the mechanisms of action of potent inhibitors is not well-understood; elucidating the mechanisms would not only advance drug design strategies but might also provide insights on a terminal electron transfer from riboflavin to UQ. To this end, we performed photoaffinity labeling experiments using photoreactive derivatives of two known inhibitors, aurachin and korormicin, on isolated Vibrio cholerae Na+-NQR. The inhibitors labeled the cytoplasmic surface domain of the NqrB subunit including a protruding N-terminal stretch, which may be critical to regulate the UQ reaction in the adjacent NqrA subunit. The labeling was blocked by short-chain UQs such as ubiquinone-2. The photolabile group (2-aryl-5-carboxytetrazole (ACT)) of these inhibitors reacts with nucleophilic amino acids, so we tested mutations of nucleophilic residues in the labeled region of NqrB, such as Asp49 and Asp52 (to Ala), and observed moderate decreases in labeling yields, suggesting that these residues are involved in the interaction with ACT. We conclude that the inhibitors interfere with the UQ reaction in two ways: the first is blocking structural rearrangements at the cytoplasmic interface between NqrA and NqrB, and the second is the direct obstruction of UQ binding at this interfacial area. Unusual competitive behavior between the photoreactive inhibitors and various competitors corroborates our previous proposition that there may be two inhibitor binding sites in Na+-NQR.


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