scholarly journals Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea

2020 ◽  
Author(s):  
Jan Niklas Macher ◽  
Berry B. van der Hoorn ◽  
Katja T. C. A. Peijnenburg ◽  
Lodewijk van Walraven ◽  
Willem Renema
Keyword(s):  
North Sea ◽  
Zooplankton Community ◽  
Taxonomic Diversity ◽  
Molecular Techniques ◽  
Trophic Levels ◽  
List Type ◽  
The North ◽  
Shelf Sea ◽  
The North Sea ◽  
Zooplankton Communities

AbstractZooplankton are key players in marine ecosystems, linking primary production to higher trophic levels. The high abundance and high taxonomic diversity renders zooplankton ideal for biodiversity monitoring. However, taxonomic identification of the zooplankton assemblage is challenging due to its high diversity, subtle morphological differences and the presence of many meroplanktonic species, especially in coastal seas. Molecular techniques such as metabarcoding can help with rapid processing and identification of taxa in complex samples, and are therefore promising tools for identifying zooplankton communities. In this study, we applied metabarcoding of the mitochondrial cytochrome c oxidase I gene to zooplankton samples collected along a latitudinal transect in the North Sea, a shelf sea of the Atlantic Ocean. Northern regions of the North Sea are influenced by inflow of oceanic Atlantic waters, whereas the southern parts are characterised by more coastal waters. Our metabarcoding results indicated strong differences in zooplankton community composition between northern and southern areas of the North Sea, particularly in the classes Copepoda, Actinopterygii (ray-finned fishes) and Polychaeta. We compared these results to the known distributions of species reported in previous studies, and by comparing the abundance of copepods to data obtained from the Continuous Plankton Recorder (CPR). We found that our metabarcoding results are mostly congruent with the reported distribution and abundance patterns of zooplankton species in the North Sea. Our results highlight the power of metabarcoding to rapidly assess complex zooplankton samples, and we suggest that the technique could be used in future monitoring campaigns and biodiversity assessments.HighlightsZooplankton communities are different in northern and southern areas of the North SeaMetabarcoding results are consistent with known species distributions and abundanceMetabarcoding allows for fast identification of meroplanktonic species

scholarly journals Depth-averaged instantaneous currents in a tidally dominated shelf sea from glider observations

2016 ◽  
Author(s):  
Lucas Merckelbach
Keyword(s):  
Real Time ◽  
North Sea ◽  
Current Data ◽  
Pass Filter ◽  
Low Pass Filter ◽  
Real Time Mode ◽  
The North ◽  
Shelf Sea ◽  
The North Sea ◽  
Better Than

Abstract. Ocean gliders have become ubiquitous observation platforms in the ocean in recent years. They are also increasingly used in coastal environments. The coastal observatory system COSYNA has pioneered the use of gliders in the North Sea, a shallow tidally energetic shelf sea. For operational reasons, the gliders operated in the North Sea are programmed to resurface every 3–5 hours. The glider's deadreckoning algorithm yields depth averaged currents, averaged in time over each subsurface interval. Under operational conditions these averaged currents are a poor approximation of the instantaneous tidal current. In this work an algorithm is developed that estimates the instantaneous current (tidal and residual) from glider observations only. The algorithm uses a second-order Butterworth low-pass filter to estimate the residual current component, and a Kalman filter based on the linear shallow water equations for the tidal component. A comparison of data from a glider experiment with current data from an ADCP deployed nearby shows that the standard deviations for the east and north current components are better than 7 cm s−1 in near-real time mode, and improve to better than 5 cm s−1 in delayed mode, where the filters can be run forward and backward. In the near-real time mode the algorithm provides estimates of the currents that the glider is expected to encounter during its next few dives. Combined with a behavioural and dynamic model of the glider, this yields predicted trajectories, the information of which is incorporated in warning messages issued to ships by the (German) authorities. In delayed mode the algorithm produces useful estimates of the depth averaged currents, which can be used in (process-based) analyses in case no other source of measured current information is available.

scholarly journals Depth-averaged instantaneous currents in a tidally dominated shelf sea from glider observations

2016 ◽  
Vol 13 (24) ◽  
pp. 6637-6649 ◽  
Author(s):  
Lucas Merckelbach
Keyword(s):  
Real Time ◽  
North Sea ◽  
Current Data ◽  
Pass Filter ◽  
Low Pass Filter ◽  
Real Time Mode ◽  
The North ◽  
Shelf Sea ◽  
The North Sea ◽  
Better Than

Abstract. Ocean gliders have become ubiquitous observation platforms in the ocean in recent years. They are also increasingly used in coastal environments. The coastal observatory system COSYNA has pioneered the use of gliders in the North Sea, a shallow tidally energetic shelf sea. For operational reasons, the gliders operated in the North Sea are programmed to resurface every 3–5 h. The glider's dead-reckoning algorithm yields depth-averaged currents, averaged in time over each subsurface interval. Under operational conditions these averaged currents are a poor approximation of the instantaneous tidal current. In this work an algorithm is developed that estimates the instantaneous current (tidal and residual) from glider observations only. The algorithm uses a first-order Butterworth low pass filter to estimate the residual current component, and a Kalman filter based on the linear shallow water equations for the tidal component. A comparison of data from a glider experiment with current data from an acoustic Doppler current profilers deployed nearby shows that the standard deviations for the east and north current components are better than 7 cm s−1 in near-real-time mode and improve to better than 6 cm s−1 in delayed mode, where the filters can be run forward and backward. In the near-real-time mode the algorithm provides estimates of the currents that the glider is expected to encounter during its next few dives. Combined with a behavioural and dynamic model of the glider, this yields predicted trajectories, the information of which is incorporated in warning messages issued to ships by the (German) authorities. In delayed mode the algorithm produces useful estimates of the depth-averaged currents, which can be used in (process-based) analyses in case no other source of measured current information is available.

The contribution of the deep chlorophyll maximum to primary production in a seasonally stratified shelf sea, the North Sea

2013 ◽  
Vol 113 (1-3) ◽  
pp. 153-166 ◽  
Author(s):  
Liam Fernand ◽  
Keith Weston ◽  
Tom Morris ◽  
Naomi Greenwood ◽  
Juan Brown ◽  
...  
Keyword(s):  
Primary Production ◽  
North Sea ◽  
Deep Chlorophyll Maximum ◽  
Chlorophyll Maximum ◽  
The North ◽  
Shelf Sea ◽  
The North Sea

scholarly journals Synchronous ecological regime shifts in the central Baltic and the North Sea in the late 1980s

2005 ◽  
Vol 62 (7) ◽  
pp. 1205-1215 ◽  
Author(s):  
J. Alheit ◽  
C. Möllmann ◽  
J. Dutz ◽  
G. Kornilovs ◽  
P. Loewe ◽  
...  
Keyword(s):  
North Sea ◽  
North Atlantic ◽  
Climatic Variability ◽  
Regime Shifts ◽  
Trophic Levels ◽  
Copepod Species ◽  
The North ◽  
The North Sea ◽  
The North Atlantic ◽  
Low Levels

Abstract The index of the North Atlantic Oscillation, the dominant mode of climatic variability in the North Atlantic region, changed in the late 1980s (1987–1989) from a negative to a positive phase. This led to regime shifts in the ecology of the North Sea (NS) and the central Baltic Sea (CBS), which involved all trophic levels in the pelagial of these two neighbouring continental shelf seas. Increasing air and sea surface temperatures, which affected critical physical and biological processes, were the main direct and indirect driving forces. After 1987, phytoplankton biomass in both systems increased and the growing season was extended. The composition of phyto- and zooplankton communities in both seas changed conspicuously, e.g. dinoflagellate abundance increased and diatom abundance decreased in the CBS. Key copepod species that are essential in fish diets experienced pronounced changes in biomass. Abundance of Calanus finmarchicus (NS) and Pseudocalanus sp. (CBS) fell to low levels, whereas C. helgolandicus (NS) and Temora longicornis and Acartia spp. (CBS) were persistently abundant. These changes in biomass of different copepod species had dramatic consequences on biomass, fisheries, and landings of key fish species: North Sea cod declined, cod in the CBS remained at low levels, and CBS sprat reached unprecedented high biomass levels resulting in high yields. The synchronous regime shifts in NS and CBS resulted in profound changes in both marine ecosystems. However, the reaction of fish populations to the bottom-up mechanisms caused by the same climatic shift was very different for the three fish stocks.

scholarly journals Shifts in spawning phenology of cod linked to rising sea temperatures

2017 ◽  
Vol 74 (6) ◽  
pp. 1561-1573 ◽  
Author(s):  
Kate McQueen ◽  
C. Tara Marshall
Keyword(s):  
Climate Change ◽  
North Sea ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Size Structure ◽  
Gonadal Development ◽  
Trophic Levels ◽  
Irish Sea ◽  
The North ◽  
The North Sea

AbstractWarming temperatures caused by climate change have the potential to impact spawning phenology of temperate marine fish as some species have temperature-dependent gonadal development. Inter-annual variation in the timing of Atlantic cod (Gadus morhua) spawning in the northern North Sea, central North Sea and Irish Sea was estimated by calculating an annual peak roe month (PRM) from records of roe landings spanning the last three decades. A trend towards earlier PRM was found in all three regions, with estimates of shifts in PRM ranging from 0.9 to 2.4 weeks per decade. Temperatures experienced by cod during early vitellogenesis correlated negatively with PRM, suggesting that rising sea temperatures have contributed to a shift in spawning phenology. A concurrent reduction in the mean size of spawning females excluded the possibility that earlier spawning was due to a shift in size structure towards larger individuals, as large cod spawn earlier than smaller-sized individuals in the North Sea. Further research into the effects of climate change on the phenology of different trophic levels within the North Sea ecosystem should be undertaken to determine whether climate change-induced shifts in spawning phenology will result in a temporal mismatch between cod larvae and their planktonic prey.

scholarly journals Why do jellyfish bloom in Norwegian waters and what can be done to recover the ecosystems in the North Sea and on the Norwegian coast?

2017 ◽  
Author(s):  
Johannes Hamre
Keyword(s):  
North Sea ◽  
West Coast ◽  
Trophic Levels ◽  
The West ◽  
Fish Stocks ◽  
Norwegian Coast ◽  
The North ◽  
Key Species ◽  
Wide Range ◽  
The North Sea

The ecosystems with their relationships between fish species and stocks, have been established by evolution for millions of years, but during the last 50 years, the ecosystems in the North Sea and along the Norwegian coast have been changed fundamentally by fisheries. The North Sea mackerel stock has been depleted and its feeding grounds have been invaded by the Western mackerel which spawns west of Ireland. This stock is now very rich in numbers and occupies the North Sea, the Norwegian Sea and the western Barents Sea. If the trend continues, mackerel may outcompete many of the other fish stocks in the area. Traditionally and until the beginning of the 1970s, there was a large stock of sandeel spawning in the North Sea and on the Norwegian coast. Sandeel juveniles was an important food source for a wide range of species, including sea mammals and birds. The fact that this stock has also been overfished, may explain many changes observed in the ecosystem on the west coast of Norway, for example a large reduction in the populations of sea birds. There are several instances where ecosystems shift to sustain jellyfish blooms in response to depletion of forage fish stocks. This was registered in Namibia in the 1990’s, where the pilchard stock was decimated and the biomass of jellyfish soon became overwhelming. On the west-coast of Norway, there are now frequent blooms of jellyfish, yet another indication that a controlling factor is missing in the system, in this case sandeel, which is a key species in the transfer of nutrients from zooplankton to higher trophic levels in the area. In this paper, I give a description of the situation and some suggested measures that should be taken in fisheries management.

Recent FerryBox observations reveal a strong increase in surface seawater pCO2 in the North Sea

2021 ◽  
Author(s):  
Vlad Macovei ◽  
Yoana Voynova ◽  
Holger Brix ◽  
Wilhelm Petersen
Keyword(s):  
North Sea ◽  
Carbon Dioxide Partial Pressure ◽  
Strong Increase ◽  
Surface Seawater ◽  
Annual Cycles ◽  
The North ◽  
Regime Types ◽  
Shelf Sea ◽  
The North Sea ◽  
Spatio Temporal

<p>Surface seawater carbon dioxide partial pressure (pCO<sub>2</sub>) in the North Sea, a large temperate shelf sea, was measured between 2014 and 2018 using FerryBox-integrated membrane sensors on ships of opportunity. The use of commercial vessels ensured a high spatio-temporal resolution, with data available year-round in areas belonging to all the stratification regime types found in the North Sea. Average annual cycles revealed a dominant biological control on pCO<sub>2</sub> variability, with thermal effects modulating its amplitude. In the regions of freshwater influence, the biogeochemical characteristics of the riverine end-member also influenced the pCO<sub>2</sub> measured near shore. Deseasonalized winter trends of seawater pCO<sub>2</sub> were positive (ranging from 4.4 ± 2.0 µatm yr<sup>-1</sup> to 8.4 ± 2.9 µatm yr<sup>-1</sup> depending on the region), while the trends calculated including all deseasonalized monthly averages were even higher (ranging from 9.7 ± 2.8 µatm yr<sup>-1</sup> to 12.2 ± 1.4 µatm yr<sup>-1</sup>). All these trends were stronger than the atmospheric pCO<sub>2</sub> trend. Consequently, during our study period, the southern North Sea became a stronger source and the northern North Sea became a weaker sink for atmospheric carbon with implications for the Northwestern European Shelf carbon uptake capacity.</p>

Combined analyses reveal environmentally driven changes in the North Sea ecosystem and raise questions regarding what makes an ecosystem model’s performance credible?

2014 ◽  
Vol 71 (1) ◽  
pp. 31-46 ◽  
Author(s):  
Steven Mackinson
Keyword(s):  
Primary Production ◽  
North Sea ◽  
Ecosystem Model ◽  
Ecosystem Approach ◽  
Trophic Levels ◽  
Fish Stock ◽  
Supporting Evidence ◽  
Sea Temperature ◽  
The North ◽  
The North Sea

When an ecosystem model of the North Sea is calibrated to data from multiple trophic levels, the model estimated the primary production required to support the food web correlates temporally with observed changes in sea temperature and nutrient levels, supporting evidence from empirical analyses. However, a different result is given from an alternative calibration using fish stock data only. The inference taken from the emergent primary production – temperature relationship and empirical data are that, on balance, there is stronger overall evidence to support the calibration constrained at multiple trophic levels. Two important implications of the findings are (i) that the relative importance of fishing and environmental effects is likely to be interpreted differently depending on the calibration approach and (ii) the contrasting model calibrations would give different responses to fishing policies. It raises questions regarding how to judge the performance (and credibility) of an ecosystem model and the critical importance of conducting empirical and modelling analyses in parallel. Adopting a combined approach to ecosystem modelling is an important step in the pursuit of operational and defensible tools to support the ecosystem approach to management.

Physical preconditioning of oxygen depletion in shelf seas

2020 ◽  
Author(s):  
Charlotte Williams ◽  
Claire Mahaffey ◽  
Matthew Palmer ◽  
Naomi Greenwood
Keyword(s):  
North Sea ◽  
Late Summer ◽  
Global Ocean ◽  
Physical Conditions ◽  
Annual Variability ◽  
The North ◽  
Biogeochemical Models ◽  
Shelf Seas ◽  
Shelf Sea ◽  
The North Sea

<p>The global ocean dissolved oxygen (DO) inventory is decreasing and the areal extent of DO deficiency is increasing. In the shelf sea BML, net DO removal can occur as a result of restricted ventilation due to seasonal thermal stratification, oxygen consumption via pelagic and benthic respiration of organic matter, and nitrification. DO decline is becoming evident in several shelf seas, with recent model studies estimating that large regions of the Northwest European continental shelf seas (325,000 to 400,000 km<sup>2</sup>) have the potential to become seasonally deficient in DO in late summer. It is therefore of vital importance that DO is monitored accurately and effectively in shelf seas.</p><p>Here we present results from AlterECO project, which aimed to provide an alternative, novel framework for the monitoring of shelf sea ecosystem health indicators, including DO, via the deployment of 20 gliders in the North Sea (NW European shelf). Between November 2017 and May 2019 the gliders provided 18 month continuous measurements of T, S, chlorophyll fluorescence, and DO in the seasonally stratified study area, capturing the onset and breakdown of two spring blooms. In both years the gliders captured a weakly stratified, deep (>60m) thermocline in late autumn which was responsible for oxygen deplete (75%)  ‘pools’ in the North Sea. Our results show that preconditioning of pre-bloom transitional periods as well as episodic mixing events drive inter-annual differences in BML DO concentrations. Large inter-annual variability between pre-bloom physical conditions was observed, with the occurrence of anticyclone Hartmut in February 2018 resulting in a much colder water column (and therefore higher solubility of DO) in spring 2018 than 2019. Additionally we will demonstrate that the erosion of mini-blooms during the onset of stratification results in mixing of supersaturated DO surface water into the BML, helping to prevent DO deficiency in the BML in late summer. Comparisons of our high resolution glider data with the latest state of the art biogeochemical models (AMM15-ERSEM) will also be presented. We postulate that understanding the drivers of inter-annual variability in pre-bloom physical conditions is crucial in terms of understanding and predicting DO depletion in shelf seas.</p><p> </p>

scholarly journals Life-history strategies of calanoid congeners under two different climate regimes: a comparison

2004 ◽  
Vol 61 (4) ◽  
pp. 709-720 ◽  
Author(s):  
Claudia Halsband-Lenk ◽  
François Carlotti ◽  
Wulf Greve
Keyword(s):  
Life History ◽  
North Sea ◽  
Life History Traits ◽  
Reproductive Period ◽  
Life Cycles ◽  
Life History Strategies ◽  
The North ◽  
Temperature Regimes ◽  
Shelf Sea ◽  
The North Sea

Abstract To evaluate the relationship between different environmental temperature regimes and life-history traits of key planktonic taxa, the life cycles of congener pairs of Temora and Centropages species at two sites, a cold-temperate shelf sea (Helgoland Island, North Sea) and a warm-temperate oceanic site (Bay of Villefranche, Mediterranean) were compared in a multi-annual time-series. In an attempt to assemble a variety of parameters – some detailed, others sporadically measured – a synthesis of the life cycle is presented for each population. Although closely related, congeners showed distinct temperature preferences and specific adaptations of their life cycles to temperature regime. On the other hand, co-existing species such as T. longicornis and C. hamatus in the North Sea showed some analogous life-history traits. C. typicus occupied an intermediate position and was able to tolerate both temperature regimes by shifting its reproductive period between seasons. We point out interannual and inter-site variability in the populations investigated and identify the unsolved questions in regard to the seasonal dynamics of these species that require verification.

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