scholarly journals Hyperbolic disc embedding of functional human brain connectomes using resting state fMRI

2021 ◽  
Author(s):  
Wonseok Whi ◽  
Seunggyun Ha ◽  
Hyejin Kang ◽  
Dong Soo Lee
Keyword(s):  
Resting State ◽  
Brain Networks ◽  
Small World ◽  
Resting State Fmri ◽  
Hyperbolic Distance ◽  
Functional Brain ◽  
Scale Free ◽  
Functional Brain Networks ◽  
Individual Scale ◽  
The Brain

The brain presents a real complex network of modular, small-world, and hierarchical nature, which are features of non-Euclidean geometry. Using resting-state functional magnetic resonance imaging (rs-fMRI), we constructed a scale-free binary graph for each subject, using internodal time-series correlation of regions-of-interest (ROIs) as a proximity measure. The resulted network could be embedded onto manifolds of various curvature and dimensions. While maintaining the fidelity of embedding (low distortion, high mean average precision), functional brain networks were found to be best represented in the hyperbolic disc. Using a popularity-similarity optimization model (PSOM) on the hyperbolic plane, we reduced the dimension of the network into 2-D hyperbolic space and were able to efficiently visualize the internodal connections of the brain, preserving proximity as distances and angles on the PSOM discs. Each individual PSOM disc revealed decentralized nature of information flow and anatomic relevance. Using the hyperbolic distance on the PSOM disc, we could detect the anomaly of network in autistic spectrum disorder (ASD) subjects. This procedure of embedding grants us a reliable new framework for studying functional brain networks and the possibility of detecting anomalies of the network in the hyperbolic disc on an individual scale.

scholarly journals Efficient small-world and scale-free functional brain networks at rest using k-nearest neighbors thresholding

2019 ◽  
Author(s):  
Caroline Garcia Forlim ◽  
Siavash Haghiri ◽  
Sandra Düzel ◽  
Simone Kühn
Keyword(s):  
Resting State ◽  
Brain Networks ◽  
Small World ◽  
Nearest Neighbors ◽  
Resting State Fmri ◽  
Brain Network ◽  
K Nearest Neighbors ◽  
Scale Free ◽  
The Brain ◽  
Density Threshold

AbstractIn recent years, there has been a massive effort to analyze the topological properties of brain networks. Yet, one of the challenging questions in the field is how to construct brain networks based on the connectivity values derived from neuroimaging methods. From a theoretical point of view, it is plausible that the brain would have evolved to minimize energetic costs of information processing, and therefore, maximizes efficiency as well as to redirect its function in an adaptive fashion, that is, resilience. A brain network with such features, when characterized using graph analysis, would present small-world and scale-free properties.In this paper, we focused on how the brain network is constructed by introducing and testing an alternative method: k-nearest neighbor (kNN). In addition, we compared the kNN method with one of the most common methods in neuroscience: namely the density threshold. We performed our analyses on functional connectivity matrices derived from resting state fMRI of a big imaging cohort (N=434) of young and older healthy participants. The topology of networks was characterized by the graph measures degree, characteristic path length, clustering coefficient and small world. In addition, we verified whether kNN produces scale-free networks. We showed that networks built by kNN presented advantages over traditional thresholding methods, namely greater values for small-world (linked to efficiency of networks) than those derived by means of density thresholds and moreover, it presented also scale-free properties (linked to the resilience of networks), where density threshold did not. A brain network with such properties would have advantages in terms of efficiency, rapid adaptive reconfiguration and resilience, features of brain networks that are relevant for plasticity and cognition as well as neurological diseases as stroke and dementia.HighlightsA novel thresholding method for brain networks based on k-nearest neighbors (kNN)kNN applied on resting state fMRI from a big cohort of healthy subjects BASE-IIkNN built networks present greater small world properties than density thresholdkNN built networks present scale-free properties whereas density threshold did not

scholarly journals Effects of a Motor Imagery Task on Functional Brain Network Community Structure in Older Adults: Data from the Brain Networks and Mobility Function (B-NET) Study

2021 ◽  
Vol 11 (1) ◽  
pp. 118
Author(s):  
Blake R. Neyland ◽  
Christina E. Hugenschmidt ◽  
Robert G. Lyday ◽  
Jonathan H. Burdette ◽  
Laura D. Baker ◽  
...  
Keyword(s):  
Older Adults ◽  
Graph Theory ◽  
Community Structure ◽  
Resting State ◽  
Brain Networks ◽  
Brain Network ◽  
Functional Brain ◽  
Network Community ◽  
Functional Brain Networks ◽  
The Brain

Elucidating the neural correlates of mobility is critical given the increasing population of older adults and age-associated mobility disability. In the current study, we applied graph theory to cross-sectional data to characterize functional brain networks generated from functional magnetic resonance imaging data both at rest and during a motor imagery (MI) task. Our MI task is derived from the Mobility Assessment Tool–short form (MAT-sf), which predicts performance on a 400 m walk, and the Short Physical Performance Battery (SPPB). Participants (n = 157) were from the Brain Networks and Mobility (B-NET) Study (mean age = 76.1 ± 4.3; % female = 55.4; % African American = 8.3; mean years of education = 15.7 ± 2.5). We used community structure analyses to partition functional brain networks into communities, or subnetworks, of highly interconnected regions. Global brain network community structure decreased during the MI task when compared to the resting state. We also examined the community structure of the default mode network (DMN), sensorimotor network (SMN), and the dorsal attention network (DAN) across the study population. The DMN and SMN exhibited a task-driven decline in consistency across the group when comparing the MI task to the resting state. The DAN, however, displayed an increase in consistency during the MI task. To our knowledge, this is the first study to use graph theory and network community structure to characterize the effects of a MI task, such as the MAT-sf, on overall brain network organization in older adults.

scholarly journals Brain network dynamics correlate with personality traits

2019 ◽  
Author(s):  
Aya Kabbara ◽  
Veronique Paban ◽  
Arnaud Weill ◽  
Julien Modolo ◽  
Mahmoud Hassan
Keyword(s):  
Functional Connectivity ◽  
Personality Traits ◽  
Resting State ◽  
Brain Networks ◽  
Neural Substrates ◽  
Brain Network ◽  
Functional Brain ◽  
Human Connectome Project ◽  
Functional Brain Networks ◽  
The Brain

AbstractIntroductionIdentifying the neural substrates underlying the personality traits is a topic of great interest. On the other hand, it is now established that the brain is a dynamic networked system which can be studied using functional connectivity techniques. However, much of the current understanding of personality-related differences in functional connectivity has been obtained through the stationary analysis, which does not capture the complex dynamical properties of brain networks.ObjectiveIn this study, we aimed to evaluate the feasibility of using dynamic network measures to predict personality traits.MethodUsing the EEG/MEG source connectivity method combined with a sliding window approach, dynamic functional brain networks were reconstructed from two datasets: 1) Resting state EEG data acquired from 56 subjects. 2) Resting state MEG data provided from the Human Connectome Project. Then, several dynamic functional connectivity metrics were evaluated.ResultsSimilar observations were obtained by the two modalities (EEG and MEG) according to the neuroticism, which showed a negative correlation with the dynamic variability of resting state brain networks. In particular, a significant relationship between this personality trait and the dynamic variability of the temporal lobe regions was observed. Results also revealed that extraversion and openness are positively correlated with the dynamics of the brain networks.ConclusionThese findings highlight the importance of tracking the dynamics of functional brain networks to improve our understanding about the neural substrates of personality.

scholarly journals High frequency functional brain networks in neonates revealed by rapid acquisition resting state fMRI

2015 ◽  
Vol 36 (7) ◽  
pp. 2483-2494 ◽  
Author(s):  
Adam P.R. Smith‐Collins ◽  
Karen Luyt ◽  
Axel Heep ◽  
Risto A. Kauppinen
Keyword(s):  
Resting State ◽  
High Frequency ◽  
Brain Networks ◽  
Resting State Fmri ◽  
Functional Brain ◽  
Rapid Acquisition ◽  
Functional Brain Networks

scholarly journals Commentary: BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks. Science 348, 1241-4

2016 ◽  
Author(s):  
Spiro P. Pantazatos ◽  
Xinyi Li
Keyword(s):  
Gene Expression ◽  
Resting State ◽  
Euclidean Distance ◽  
Brain Networks ◽  
Resting State Fmri ◽  
Spatial Proximity ◽  
Functional Magnetic Resonance ◽  
Future Directions ◽  
Functional Brain ◽  
Functional Brain Networks

SummaryA recent report claims that functional brain networks defined with resting-state functional magnetic resonance imaging (fMRI) can be recapitulated with correlated gene expression (i.e. high within-network tissue-tissue “strength fraction”, SF) (Richiardi et al., 2015). However, the authors do not adequately control for spatial proximity. We replicated their main analysis, performed a more effective adjustment for spatial proximity, and tested whether “null networks” (i.e. clusters with center coordinates randomly placed throughout cortex) also exhibit high SF. Removing proximal tissue-tissue correlations by Euclidean distance, as opposed to removing correlations within arbitrary tissue labels as in (Richiardi et al., 2015), reduces within-network SF to no greater than null. Moreover, randomly placed clusters also have significantly high SF, indicating that high within-network SF is entirely attributable to proximity and is unrelated to functional brain networks defined by resting-state fMRI. We discuss why additional validations in the original article are invalid and/or misleading and suggest future directions.

scholarly journals Aging Reduces the Functional Brain Networks Strength—a Resting State fMRI Study of Healthy Mouse Brain

2019 ◽  
Vol 11 ◽  
Author(s):  
Ander Egimendia ◽  
Anuka Minassian ◽  
Michael Diedenhofen ◽  
Dirk Wiedermann ◽  
Pedro Ramos-Cabrer ◽  
...  
Keyword(s):  
Mouse Brain ◽  
Resting State ◽  
Brain Networks ◽  
Resting State Fmri ◽  
Healthy Mouse ◽  
Functional Brain ◽  
Fmri Study ◽  
Functional Brain Networks

scholarly journals Hierarchical modelling of functional brain networks in population and individuals from big fMRI data

2021 ◽  
Author(s):  
Seyedeh-Rezvan Farahibozorg ◽  
Janine D Bijsterbosch ◽  
Weikang Gong ◽  
Saad Jbabdi ◽  
Stephen M Smith ◽  
...  
Keyword(s):  
Big Data ◽  
Resting State ◽  
Brain Networks ◽  
Resting State Fmri ◽  
List Type ◽  
Uk Biobank ◽  
Functional Brain ◽  
Functional Brain Networks ◽  
Dual Regression ◽  
Cognitive Traits

AbstractA major goal of large-scale brain imaging datasets is to provide resources for investigating heterogeneous populations. Characterisation of functional brain networks for individual subjects from these datasets will have an enormous potential for prediction of cognitive or clinical traits. We propose for the first time a technique, Stochastic Probabilistic Functional Modes (sPROFUMO), that is scalable to UK Biobank (UKB) with expected 100,000 participants, and hierarchically estimates functional brain networks in individuals and the population, while allowing for bidirectional flow of information between the two. Using simulations, we show the model’s utility, especially in scenarios that involve significant cross-subject variability, or require delineation of fine-grained differences between the networks. Subsequently, by applying the model to resting-state fMRI from 4999 UKB subjects, we mapped resting state networks (RSNs) in single subjects with greater detail than we have achieved previously in UKB (>100 RSNs), and demonstrate that these RSNs can predict a range of sensorimotor and higher-level cognitive functions. Furthermore, we demonstrate several advantages of the model over independent component analysis combined with dual-regression (ICA-DR), particularly with respect to the estimation of the spatial configuration of the RSNs and the predictive power for cognitive traits. The proposed model and results can open a new door for future investigations into individualised profiles of brain function from big data.HighlightsWe introduce stochastic PROFUMO (sPROFUMO) for inferring functional brain networks from big datasPROFUMO hierarchically estimates fMRI networks in population and individualsWe characterised high dimensional resting state fMRI networks from UK BiobankModel outperforms ICA and dual regression for estimation of individual-specific network topographyWe demonstrate the model’s utility for predicting cognitive traits

scholarly journals Spontaneous Activity in Primary Visual Cortex Relates to Visual Creativity

2021 ◽  
Vol 15 ◽  
Author(s):  
Yibo Wang ◽  
Junchao Li ◽  
Zengjian Wang ◽  
Bishan Liang ◽  
Bingqing Jiao ◽  
...  
Keyword(s):  
Visual Cortex ◽  
Spontaneous Activity ◽  
Resting State ◽  
Brain Activity ◽  
Brain Networks ◽  
Critical Time ◽  
Functional Brain ◽  
Time Points ◽  
Functional Brain Networks ◽  
The Brain

Cognitive and neural processes underlying visual creativity have attracted substantial attention. The current research uses a critical time point analysis (CTPA) to examine how spontaneous activity in the primary visual area (PVA) is related to visual creativity. We acquired the functional magnetic resonance imaging (fMRI) data of 16 participants at the resting state and during performing a visual creative synthesis task. According to the CTPA, we then classified spontaneous activity in the PVA into critical time points (CTPs), which reflect the most useful and important functional meaning of the entire resting-state condition, and the remaining time points (RTPs). We constructed functional brain networks based on the brain activity at two different time points and then subsequently based on the brain activity at the task state in a separate manner. We explore the relationship between resting-state and task-fMRI (T-fMRI) functional brain networks. Our results found that: (1) the pattern of spontaneous activity in the PVA may associate with mental imagery, which plays an important role in visual creativity; (2) in comparison with the RTPs-based brain network, the CTP-network showed an increase in global efficiency and a decrease in local efficiency; (3) the regional integrated properties of the CTP-network could predict the integrated properties of the creative-network while the RTP-network could not. Thus, our findings indicated that spontaneous activity in the PVA at CTPs was associated with a visual creative task-evoked brain response. Our findings may provide an insight into how the visual cortex is related to visual creativity.

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