scholarly journals The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture

2021 ◽  
Author(s):  
Ravi Koppolu ◽  
Guojing Jiang ◽  
Sara G Milner ◽  
Quddoos H Muqaddasi ◽  
Twan Rutten ◽  
...  

AbstractUnderstanding the genetic basis of yield forming factors in small grain cereals is of extreme importance, especially in the wake of stagnation of further yield gains in these crops. One such yield forming factor in these cereals is the number of grain-bearing florets produced per spikelet. Wildtype barley (Hordeum vulgare L.) spikelets are determinate structures, the spikelet axis (rachilla) degenerates after producing single floret. In contrast, the rachilla of wheat (Triticum ssp.) spikelets, which are indeterminate, elongates to produce up to 12 florets. In our study, we characterized the barley spikelet determinacy mutant multiflorus2.b (mul2.b) that produced up to three fertile florets on elongated rachillae of lateral spikelets. Apart from the lateral spikelet indeterminacy (LS-IN), we also characterized the supernumerary spikelet phenotype in the central spikelets (CS-SS) of mul2.b. Through our phenotypic and genetic analyses, we identified two major QTLs on chromosomes 2H and 6H, and two minor QTLs on 3H for the LS-IN phenotype. For, the CS-SS phenotype we identified one major QTL on 6H, and a minor QTL on 5H chromosomes. Notably, the 6H QTLs for CS-SS and LS-IN phenotypes co-located with each other, potentially indicating that a single genetic factor might regulate both phenotypes. Thus, our in-depth phenotyping combined with genetic analyses revealed the quantitative nature of the LS-IN and CS-SS phenotypes in mul2.b, paving the way for cloning the genes underlying these QTLs in the future.Key messageSpikelet indeterminacy and supernumerary spikelet phenotypes in barley multiflorus2.b mutant show polygenic inheritance. Genetic analysis of multiflorus2.b revealed major QTLs for spikelet determinacy and supernumerary spikelet phenotypes on 2H and 6H chromosomes.

Author(s):  
Ravi Koppolu ◽  
Guojing Jiang ◽  
Sara G. Milner ◽  
Quddoos H. Muqaddasi ◽  
Twan Rutten ◽  
...  

Abstract Key message Spikelet indeterminacy and supernumerary spikelet phenotypes in barley multiflorus2.b mutant show polygenic inheritance. Genetic analysis of multiflorus2.b revealed major QTLs for spikelet determinacy and supernumerary spikelet phenotypes on 2H and 6H chromosomes. Abstract Understanding the genetic basis of yield forming factors in small grain cereals is of extreme importance, especially in the wake of stagnation of further yield gains in these crops. One such yield forming factor in these cereals is the number of grain-bearing florets produced per spikelet. Wild-type barley (Hordeum vulgare L.) spikelets are determinate structures, and the spikelet axis (rachilla) degenerates after producing single floret. In contrast, the rachilla of wheat (Triticum ssp.) spikelets, which are indeterminate, elongates to produce up to 12 florets. In our study, we characterized the barley spikelet determinacy mutant multiflorus2.b (mul2.b) that produced up to three fertile florets on elongated rachillae of lateral spikelets. Apart from the lateral spikelet indeterminacy (LS-IN), we also characterized the supernumerary spikelet phenotype in the central spikelets (CS-SS) of mul2.b. Through our phenotypic and genetic analyses, we identified two major QTLs on chromosomes 2H and 6H, and two minor QTLs on 3H for the LS-IN phenotype. For, the CS-SS phenotype, we identified one major QTL on 6H, and a minor QTL on 5H chromosomes. Notably, the 6H QTLs for CS-SS and LS-IN phenotypes co-located with each other, potentially indicating that a single genetic factor might regulate both phenotypes. Thus, our in-depth phenotyping combined with genetic analyses revealed the quantitative nature of the LS-IN and CS-SS phenotypes in mul2.b, paving the way for cloning the genes underlying these QTLs in the future.


Author(s):  
Gaurav Khosla ◽  
B. S. Gill ◽  
Asmita Sirari ◽  
Pankaj Sharma ◽  
Inderpreet Dhaliwal

The variation for 100 seed weight in F2 population derived from a cross, AGS456 (an exotic vegetable type from Taiwan)/SL958 of soybean followed a normal curve with a range of 8.00-27.22g indicating quantitative nature of genetic control for seed size. Parental lines were screened with 207 SSR markers to identify polymorphism and 90 primer pairs detected polymorphism between the parents. These ninety markers were used for detecting polymorphism between two extreme bulks for seed weight. Out of these, 18 primer pairs were polymorphic for the bulks and were used for bulk segregant analysis in 200 F2 plants. One major QTL for seed weight was identified on LG M with Sat_244 and Satt175 as flanking markers, explaining 19.0 per cent phenotypic variation. Two minor QTLs were also identified on LG D1b, one in interval Satt041-Sat_069 with an estimated phenotypic variation (R2) of 6.0 per cent and the other in interval Sat_069-Sat_0183 estimating 7.0 per cent phenotypic variance. The markers flanking TLs may help in marker-assisted selection (MAS) for improvement of seed weight in soybean after fine mapping and validation.


2020 ◽  
Vol 75 (3) ◽  
pp. 204-213
Author(s):  
Varvara A. Ryabkova ◽  
Leonid P. Churilov ◽  
Yehuda Shoenfeld

The pathogenesis of autoimmune diseases is very complex and multi-factorial. The concept of Mosaics of Autoimmunity was introduced to the scientific community 30 years ago by Y. Shoenfeld and D.A. Isenberg, and since then new tiles to the puzzle are continuously added. This concept specifies general pathological ideas about the multifactorial threshold model for polygenic inheritance with a threshold effect by the action of a number of external causal factors as applied to the field of autoimmunology. Among the external factors that can excessively stimulate the immune system, contributing to the development of autoimmune reactions, researchers are particularly interested in chemical substances, which are widely used in pharmacology and medicine. In this review we highlight the autoimmune dynamics i.e. a multistep pathogenesis of autoimmune diseases and the subsequent development of lymphoma in some cases. In this context several issues are addressed namely, genetic basis of autoimmunity; environmental immunostimulatory risk factors; gene/environmental interaction; pre-clinical autoimmunity with the presence of autoantibodies; and the mechanisms, underlying lymphomagenesis in autoimmune pathology. We believe that understanding the common model of the pathogenesis of autoimmune diseases is the first step to their successful management.


2018 ◽  
Vol 6 (14) ◽  
pp. 51 ◽  
Author(s):  
Kristin L. Mercer

Agroecology derives much of its strength from interactions between disciplines that produce a holistic perspective on agricultural systems and issues.  Although ongoing integration of social dynamics into agroecology has strengthened the field, evolution and genetics have not been embraced to the same degree, despite the fact that they have been are discussed in some common agroecology texts.  I argue that the field of agroecology could extend its reach and depth by embracing the evolutionary study of agroecosystems.  Areas of evolutionary inquiry with relevance to agriculture focus on long or short term processes, encompass a range of scales, incorporate molecular or quantitative genetic analyses, and explore ecological processes to differing degrees.


Aquaculture ◽  
2010 ◽  
Vol 309 (1-4) ◽  
pp. 66-74 ◽  
Author(s):  
Nguyen Hong Nguyen ◽  
Raul W. Ponzoni ◽  
Hoong Yip Yee ◽  
Khairul R. Abu-Bakar ◽  
Azhar Hamzah ◽  
...  

1996 ◽  
Vol 82 (1) ◽  
pp. 1-5 ◽  
Author(s):  
Tommaso A. Dragani ◽  
Federico Canzian ◽  
Giacomo Manenti ◽  
Marco A. Pierotti

The murine inbred strain C3H provides an experimental model of inherited predisposition to hepatocellular cancer. Hepatocellular neoplastic lesions induced by chemical carcinogens reach a volume 10-100-fold greater in C3H mice than in genetically resistant strains. However, the huge strain differences in tumor size are explained by relatively small differences (10%-30%) in tumor cell kinetics. Genetic linkage experiments in different crosses demonstrated that six unlinked hepatocarcinogen sensitivity ( Hcs) and two hepatocarcinogen resistance ( Hcr) loci determined quantitative variations in susceptibility to hepatocarcinogenesis. Such results provide the genetic basis for the strain variations in susceptibility to hepatocarcinogenesis and demonstrate a new model of polygenic inheritance of predisposition to cancer.


The Auk ◽  
2005 ◽  
Vol 122 (4) ◽  
pp. 1123-1129 ◽  
Author(s):  
Pim Edelaar ◽  
Erik Postma ◽  
Peter Knops ◽  
Ron Phillips

AbstractUnusual among birds, the bill tips in crossbills (Loxia spp.) overlap in the vertical plane, with the tip of the lower mandible to either the left or right of the tip of the upper mandible when viewed from above. Patterns observed in wild populations and experimental foraging data suggest that a 1:1 ratio of left- to right-crossing individuals is maintained by frequency-dependent natural selection in some populations, and that genetic drift causes deviation from a 1:1 ratio in other populations. Both processes require a genetic basis for this remarkable polymorphism, yet few data are available that address whether, and how, mandible crossing direction is heritable. To test for a genetic basis of this trait (single or quantitative, autosomal or sex-linked), we analyzed resemblance in mandible crossing direction between related captive-bred individuals of several crossbill taxa with standard statistical techniques as well as modern animal model methodology. Surprisingly, we did not find statistically significant support for a genetic basis of mandible crossing direction. Comparisons of the ratio of left- to right-crossing males and females in wild populations also did not support a sex-linked quantitative genetic basis. We conclude that mandible crossing direction may have uncharacteristically low heritability, but we cannot rule out that it is nongenetically determined.La Dirección de Cruzamiento de la Mandíbula en las Especies de Loxia no Presenta Base Genética


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