scholarly journals Inference of Morphogen Gradient Precision from Molecular Noise Data

2021 ◽  
Author(s):  
Roman Vetter ◽  
Dagmar Iber

During development, morphogen gradients provide spatial information for tissue patterning. Gradients and readout mechanisms are inevitably variable, yet the resulting patterns are strikingly precise. Measurement limitations currently preclude precise detection of morphogen gradients over long distances. Here, we develop a new formalism to estimate gradient precision along the entire patterning axis from measurements close to the source. Using numerical simulations, we infer gradient variability from measured molecular noise levels in morphogen production, decay, and diffusion. The predicted precision is much higher than previously measured—precise enough to allow even single gradients to define the central progenitor boundaries during neural tube development. Finally, we show that the patterning mechanism is optimized for precise progenitor cell numbers, rather than precise boundary positions, as the progenitor domain size is particularly robust to gradient alterations. We conclude that single gradients can yield the observed developmental precision, which provides new prospects for tissue engineering.

2016 ◽  
Vol 50 (0) ◽  
Author(s):  
Fabio Scatolini ◽  
Cláudio Jorge Pinto Alves

ABSTRACT OBJECTIVE To perform a quantitative analysis of the background noise at Congonhas Airport surroundings based on large sampling and measurements with no interruption. METHODS Measuring sites were chosen from 62 and 72 DNL (day-night-level) noise contours, in urban sites compatible with residential use. Fifteen sites were monitored for at least 168 hours without interruption or seven consecutive days. Data compilation was based on cross-reference between noise measurements and air traffic control records, and results were validated by airport meteorological reports. Preliminary diagnoses were established using the standard NBR-13368. Background noise values were calculated based on the Sound Exposure Level (SEL). Statistic parameters were calculated in one-hour intervals. RESULTS Only four of the fifteen sites assessed presented aircraft operations as a clear cause for the noise annoyance. Even so, it is possible to detect background noise levels above regulation limits during periods of low airport activity or when it closes at night. CONCLUSIONS All the sites monitored showed background noise levels above regulation limits between 7:00 and 21:00. In the intervals between 6:00-6:59 and 21:00-22:59 the noise data, when analyzed with the current airport operational characteristics, still allow the development of additional mitigating measures.


1999 ◽  
Author(s):  
David W. Warner ◽  
Niranjan G. Humbad ◽  
Basem Alzahabi ◽  
Robert A. Porada

Abstract Noise from automotive air handling systems is an important issue for driver and passenger comfort. This study was undertaken to quantify the flow noise from the blower and remaining system, and to develop an analytical predictive model for airflow noise. Tests were conducted on four different vehicle Air Handling Systems (AHS) comprised of blower, heat exchangers, ducts and panel registers. Flow and noise data were measured. Test results suggest that overall noise is dominated by blower noise. A predictive model for airflow noise was developed. This model suggests system pressure drop (Δp) and system airflow (q) being dominant parameters in the noise predictions. The noise variation scales as flow velocity to the power 5.75. The developed model for flow noise can be very useful in the design process to estimate noise levels for new systems from CFD/CAE analyses.


2018 ◽  
Vol 38 (4) ◽  
pp. 38-44 ◽  
Author(s):  
Danielle Goeren ◽  
Sherley John ◽  
Katie Meskill ◽  
Laura Iacono ◽  
Stacy Wahl ◽  
...  

BACKGROUND High noise levels in intensive care units are common. Increased noise levels can lead to sleep deprivation, increased pain perception, and delirium. The most common cause of reducible noise in intensive care units often is attributed to staff conversations. OBJECTIVES In January 2015, the neurosurgical intensive care unit staff identified noise as a problem, referencing complaints from other disciplines and family members. Quiet times from 3 am to 5 am and from 3 pm to 5 pm were agreed upon. An improvement plan was developed with a goal to decrease noise levels by 10 decibels in 6 months. METHODS Using a decibel meter, noise data were collected in 4 locations every 30 minutes during the chosen times for 8 days. Quiet time was implemented 1 week after staff, patient, and family education was completed. Decibel data were collected and evaluated after 60 days. RESULTS There were statistically significant reductions in noise levels at nurses’ station left (P = .04) and the bed 9 entrance (P = .02). Noise levels were lower, but not significantly so, for nurses’ station right (P = .12) and the bed 4 entrance (P = .06). Noise levels during quiet time decreased to an average of 10 to 15 decibels lower than baseline data. CONCLUSIONS Sharing baseline data was effective to heighten noise awareness. During quiet time, limiting conversations, eliminating environmental noise, and dimming the lights as a reminder to be quiet are 3 simple strategies that can be implemented to lessen noise.


2020 ◽  
Vol 16 (1) ◽  
Author(s):  
Baudilio Acevedo Buitrago ◽  
Deisy Mireya Ortíz Bernal ◽  
Estefanía Ramírez Trujillo

Introduction:This article shows the evaluation of environmental noise around the medical centers located in the UPZ Americas and Kennedy Central - Bogotá, and the proposal of some actions related to the planning of the territory as a strategy for mitigation. Problem:The Kennedy town has presented high levels of environmental noise, which is a worrying aspect due to its correlation with the effects on people's health. Objective:This research was conducted for the purpose of compiling updated information on environmental noise in the Kennedy locality and evaluating regulatory compliance and identifing the phenomena to establish actions that lead to its mitigation. Methodology:The measurement process was guided under the guidelines of ISO 1996:1 and the parameters established in Res. 627/2006 of the Ministry of Environment. Results:The ambient noise levels exceed the maximum permissible limits (55 dB) on the different days and hours of measurement. It was also determined that this phenomenon is mainly related to high vehicular flow as well as formal and informal commercial activities around medical centers. Conclusion:There is no regulatory compliance in relation to environmental noise and the territorial plan established in the UPZ. The suggested actions are: use of parks to plant native trees that act as biological barriers, non-use of surrounding streets as secondary traffic roads and reorganization of trade activities. Originality:Updated environmental noise data was obtained around medical centers in Kennedy and problems of inappropriate growth and development were identified. Limitations:Lack of information on environmental noise measurements in other sectors of the area.


ARCTIC ◽  
2020 ◽  
Vol 73 (3) ◽  
pp. 386-392
Author(s):  
Muthuraj Ashokan ◽  
Ganesan Latha ◽  
Ayyadurai Thirunavukkarasu

Underwater ambient noise was measured in Kongsfjorden, Svalbard, during the summers of 2015 and 2016 to understand the contribution of iceberg bubbling, iceberg calving, and shipping noise to the acoustic environment of the fjord. Comparison of the ambient noise data for the months of August, September, and October showed that average noise levels were similar, although the average noise level for 2015 was ~9 dB higher than in 2016 because of higher shipping noise. Maximum ambient noise was produced at frequencies less than 10 kHz during both summers. Spectrograms of iceberg calving noise showed that it occurred in the frequency below 500 Hz. Shipping noise was seen in the band below 600 Hz, and iceberg bubbling noise was detected in the band above 400 Hz. Instrument noise was observed in the frequency 400 Hz. It is clear that ice breaking and shipping contribute substantially to ambient noise in Kongsfjorden.


2011 ◽  
Vol 194 (4) ◽  
pp. 539-549 ◽  
Author(s):  
Enxiu Wang ◽  
Edward R. Ballister ◽  
Michael A. Lampson

Aurora B kinase is essential for successful cell division and regulates spindle assembly and kinetochore–microtubule interactions. The kinase localizes to the inner centromere until anaphase, but many of its substrates have distinct localizations, for example on chromosome arms and at kinetochores. Furthermore, substrate phosphorylation depends on distance from the kinase. How the kinase reaches substrates at a distance and how spatial phosphorylation patterns are determined are unknown. In this paper, we show that a phosphorylation gradient is produced by Aurora B concentration and activation at centromeres and release and diffusion to reach substrates at a distance. Kinase concentration, either at centromeres or at another chromosomal site, is necessary for activity globally. By experimentally manipulating dynamic exchange at centromeres, we demonstrate that the kinase reaches its substrates by diffusion. We also directly observe, using a fluorescence resonance energy transfer–based biosensor, phosphorylation spreading from centromeres after kinase activation. We propose that Aurora B dynamics and diffusion from the inner centromere create spatial information to regulate cell division.


Author(s):  
A Bracciali ◽  
L Ciuffi ◽  
R Ciuffi

An on-board device for bolting to the axlebox of a railway vehicle or locomotive to measure rolling noise close to the wheel surface has been developed by the authors (1, 2). Even though laboratory calibration and test runs have shown that the measured noise data are consistent, there was no way to prove that they were in accordance with the on-ground measured ones. Italian State Railways (FS) have performed tests with different wheelsets to evaluate the efficiency of several noise-reduction solutions; during these tests it was possible to repeat noise measurements on-board, therefore obtaining a sufficient amount of data to calibrate the device and to analyse in detail the behaviour of such wheelsets. Calculated calibration constants prove that on-board measured data can be used with confidence to estimate noise levels at several distances from the track, thereby reducing the necessity of long and expensive on-ground tests to measure environmental noise pollution.


2005 ◽  
Vol 899 ◽  
Author(s):  
Sergey Vasenkov ◽  
Jörg Kärger

AbstractPulsed field gradient (PFG) NMR technique has been applied to study molecular transport in two different types of nanostructured materials, viz. in fluid catalytic cracking (FCC) catalysts and in lipid membranes. Diffusion studies have been performed for a broad range of molecular displacements covering displacements that are as small as a fraction of a micron. The effective diffusivities recorded on various length scales are used to evaluate the relevance of various transport modes in the particles of FCC catalysts for the rate of molecular exchange between catalyst particles and the surrounding atmosphere. This rate is shown to be primarily related to the diffusion in the meso- and macropores of the particles under the condition of fast molecular exchange between these pores and the zeolite crystals located in the particles. Studies of lipid membranes are focused on developing fundamental understanding of the influence of various types of domains on lateral mobility of lipids. A meaningful study of this influence requires an ability of monitoring lipid diffusion for different displacements that are smaller and larger than the domain size. First PFG NMR data along this direction are presented.


Development ◽  
1988 ◽  
Vol 104 (Supplement) ◽  
pp. 3-16 ◽  
Author(s):  
Vernon French

`Morphogen' gradients have long been invoked as a means of specifying spatial patterns of developmental fate, and it has now been demonstrated that they are indeed involved in the early steps of insect segmentation. In many insects, including Drosophila, ligature and transplantation experiments have shown that the segment pattern develops through interactions between the ends of the egg. These results, plus those from irradiation and centrifugation of chironomid eggs, suggest that specific maternally synthesized RNAs are localized at the ends of the oocyte, and act as sources of opposing anterior and posterior gradients in the early egg. In Drosophila, different groups of maternal `segmentation' genes are required for depositing within the oocyte terminal, anterior and posterior spatial cues. Injection of wild-type cytoplasm into mutant eggs which lack the anterior (bicoid or posterior (oskar) cue suggests that these are normally distributed as gradients from strictly localized sources. It has now been shown directly that bicoid RNA passes into the oocyte from the nurse cells, remains localized in the anterior tip, and is later translated into protein which forms an exponential concentration gradient down the early egg. Genes required for posterior spatial information have not yet been cloned, so a posterior gradient (most likely to consist of nanos product) has yet to be directly demonstrated. Analysis of zygotic `segmentation' genes has shown that the different segment primordia are not directly specified by small changes in the anterior or (postulated) posterior gradient. It seems likely that the maternal cues specify a few bands of expression of zygotic gap genes such as hunchback, Krüppel and knirps, and that the pattern is then elaborated through interactions between these. The anterior gradient seems to form by diffusion of bicoid protein, but the posterior signal seems to be capable of reorganization in some injection experiments. This could imply a diffusion/reaction mechanism, or could result simply from the way in which the terminal, anterior and posterior cues act via gap gene activity. Hence the segment pattern formed after injection (and after irradiation of chironomid eggs) will not always correspond to the gradient profile. Other types of insect egg develop with no nurse cells or external anterior source of RNA and, in these, there is some evidence of a posterior gradient but not of a similar signal from the anterior end. It is now clear from the analysis of segmentation in Drosophila that the determinants and gradients inferred from earlier studies do provide a positional framework within which the segment pattern is gradually elaborated. Investigation of segmentation in other eggs will be greatly assisted if the molecular techniques can be transferred from Drosophila.


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