scholarly journals Modularity and selection of nectar traits in the evolution of the selfing syndrome in Ipomoea lacunosa (Convolvulaceae)

2021 ◽  
Author(s):  
Irene T Liao ◽  
Joanna Rifkin ◽  
Gongyuan Cao ◽  
Mark Rausher
Keyword(s):  
Recombinant Inbred Lines ◽  
Genetic Correlations ◽  
Direct Selection ◽  
Floral Trait ◽  
Ipomoea Lacunosa ◽  
Trait Divergence ◽  
Genetic Clusters ◽  
Trait Locus ◽  
Ipomoea Cordatotriloba ◽  
Selfing Syndrome

Although the evolution of the selfing syndrome often involves reductions in floral size, pollen, and nectar, few studies of selfing syndrome divergence have examined nectar. We investigate whether nectar traits have evolved independently of other floral size traits in the selfing syndrome, whether nectar traits diverged due to drift or selection, and the extent to which quantitative trait locus (QTL) analyses predict genetic correlations. We use F5 recombinant inbred lines (RILs) generated from a cross between Ipomoea cordatotriloba and I. lacunosa. We calculate genetic correlations to identify evolutionary modules, test whether traits have been under selection, identify QTLs, and perform correlation analyses to evaluate how well QTL properties reflect the genetic correlations. Nectar and floral size traits form separate genetic clusters. Directional selection has acted to reduce nectar traits in the selfing I. lacunosa. Calculations from QTL properties are consistent with observed genetic correlations. Floral trait divergence during mating system syndrome evolution reflects independent evolution of at least two evolutionary modules: nectar and floral size traits. This independence implies that adaptive change in these modules requires direct selection on both floral size and nectar traits. Our study also supports the expected mechanistic link between QTL properties and genetic correlations.

scholarly journals Corrigendum to: Consequences of genetic selection for environmental impact traits on economically important traits in dairy cows

2018 ◽  
Vol 58 (10) ◽  
pp. 1966
Author(s):  
Purna Kandel ◽  
Sylvie Vanderick ◽  
Marie-Laure Vanrobays ◽  
Hélène Soyeurt ◽  
Nicolas Gengler
Keyword(s):  
Dairy Cows ◽  
Body Condition Score ◽  
Genetic Correlations ◽  
Genetic Selection ◽  
Selection Response ◽  
Direct Selection ◽  
Correlated Response ◽  
Production Traits ◽  
Ch4 Emissions ◽  
Natural Logarithm

Methane (CH4) emission is an important environmental trait in dairy cows. Breeding aiming to mitigate CH4 emissions require the estimation of genetic correlations with other economically important traits and the prediction of their selection response. In this study, test-day CH4 emissions were predicted from milk mid-infrared spectra of Holstein cows. Predicted CH4 emissions (PME) and log-transformed CH4 intensity (LMI) computed as the natural logarithm of PME divided by milk yield (MY). Genetic correlations of PME and LMI with traits used currently were approximated from correlations between estimated breeding values of sires. Values were for PME with MY 0.06, fat yield (FY) 0.09, protein yield (PY) 0.13, fertility 0.17; body condition score (BCS) –0.02; udder health (UDH) 0.22; and longevity 0.22. As expected by its definition, values were negative for LMI with production traits (MY –0.61; FY –0.15 and PY –0.40) and positive with fertility (0.36); BCS (0.20); UDH (0.08) and longevity (0.06). The genetic correlations of 33 type traits with PME ranged from –0.12 to 0.25 and for LMI ranged from –0.22 to 0.18. Without selecting PME and LMI (status quo) the relative genetic change through correlated responses of other traits were in PME by 2% and in LMI by –15%, but only due to the correlated response to MY. Results showed for PME that direct selection of this environmental trait would reduce milk carbon foot print but would also affect negatively fertility. Therefore, more profound changes in current indexes will be required than simply adding environmental traits as these traits also affect the expected progress of other traits.

scholarly journals Molecular Mapping of Loci Conferring Susceptibility to Spot Blotch and Resistance to Powdery Mildew in Barley Using the Sequencing-Based Genotyping Approach

2020 ◽  
Vol 110 (2) ◽  
pp. 440-446 ◽  
Author(s):  
Yueqiang Leng ◽  
Mingxia Zhao ◽  
Jason Fiedler ◽  
Antonín Dreiseitl ◽  
Shiaoman Chao ◽  
...  
Keyword(s):  
Powdery Mildew ◽  
Molecular Mapping ◽  
Recombinant Inbred Lines ◽  
Major Gene ◽  
Bipolaris Sorokiniana ◽  
Spot Blotch ◽  
Blumeria Graminis ◽  
Seedling Stage ◽  
Barley Cultivars ◽  
Trait Locus

Spot blotch (SB) caused by Bipolaris sorokiniana and powdery mildew (PM) caused by Blumeria graminis f. sp. hordei are two important diseases of barley. To map genetic loci controlling susceptibility and resistance to these diseases, a mapping population consisting of 138 recombinant inbred lines (RILs) was developed from the cross between Bowman and ND5883. A genetic map was constructed for the population with 852 unique single nucleotide polymorphism markers generated by sequencing-based genotyping. Bowman and ND5883 showed distinct infection responses at the seedling stage to two isolates (ND90Pr and ND85F) of Bipolaris sorokiniana and one isolate (Race I) of Blumeria graminis f. sp. hordei. Genetic analysis of the RILs revealed that one major gene (Scs6) controls susceptibility to Bipolaris sorokiniana isolate ND90Pr, and another major gene (Mla8) confers resistance to Blumeria graminis f. sp. hordei isolate Race I, respectively. Scs6 was mapped on chromosome 1H of Bowman, as previously reported. Mla8 was also mapped to the short arm of 1H, which was tightly linked but not allelic to the Rcs6/Scs6 locus. Quantitative trait locus (QTL) analysis identified two QTLs, QSbs-1H-P1 and QSbs-7H-P1, responsible for susceptibility to spot blotch caused by Bipolaris sorokiniana isolate ND85F in ND5883, which are located on chromosome 1H and 7H, respectively. QSbs-7H-P1 was mapped to the same region as Rcs5, whereas QSbs-1H-P1 may represent a novel allele conferring seedling stage susceptibility to isolate ND85F. Identification and molecular mapping of the loci for SB susceptibility and PM resistance will facilitate development of barley cultivars with resistance to the diseases.

Towards improving the drought tolerance of rice in China

2006 ◽  
Vol 4 (1) ◽  
pp. 47-53 ◽  
Author(s):  
Hongyan Liu ◽  
Hanwei Mei ◽  
Xinqiao Yu ◽  
Guihua Zou ◽  
Guolan Liu ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Recombinant Inbred Lines ◽  
Research Programme ◽  
Complex Trait ◽  
Central China ◽  
High Yield ◽  
Rice Cultivars ◽  
Evaluation Standard ◽  
Qtl Discovery ◽  
Trait Locus

Drought tolerance (DT) is a very complex trait. For the purpose of developing DT rice cultivars, a research programme was initiated in 1997 in China, consisting of four coherent parts: the development of a DT field screen facility and evaluation standard; the collection, evaluation and enhancement of DT rice resources; DT gene/quantitative trait locus (QTL) discovery; and DT rice breeding. More than 2000 rice accessions, mostly from China, were collected and evaluated in a new DT screening facility with a powerful water management system. Eighty-six entries were selected to serve as a core DT collection. A set of 187 recombinant inbred lines was developed for the genetic mapping of DT and high yield-related QTL under drought conditions. Several DT rice cultivars adapted to southern and central China were released. DT rice CMS lines were developed and distributed to most parts of China to encourage the development of DT or water-saving hybrid rice.

scholarly journals Early Selection of Douglas-Fir across South Central Coastal Oregon, USA

2006 ◽  
Vol 55 (1-6) ◽  
pp. 135-141 ◽  
Author(s):  
C. A. Dean ◽  
R. W. Stonecypher
Keyword(s):  
Genetic Correlations ◽  
Volume Growth ◽  
Douglas Fir ◽  
Early Selection ◽  
Stem Volume ◽  
Direct Selection ◽  
South Central ◽  
Coos Bay ◽  
The Individual ◽  
Age Range

Abstract Details are given of three first-generation progeny tests (CB1, CB2 and CB3) of coastal Douglas-fir (Pseudotsuga menziesii [MIRB.] FRANCO var. menziesii) planted in the Coos Bay region of south-central coastal Oregon in 1973. The three tests included 15 polymix families based on a 10-pollen mix, and 27 families openpollinated on the ortet. The present study gives heritabilities and additive genetic correlations for growth measured between two and 17 years after planting. Correlated responses are estimated for volume at 17 years from early selection for height and diameter. Between four and 17 years after planting the individual heritability (h2) of height of coastal Douglas-fir across the Coos Bay tests was quite stable between h2 = 0.18 and 0.22. The heritability of stem diameter age-forage was consistently much lower than for height. In the critical age range for early selection between five and 10 years the individual heritability of diameter ranged from h2 = 0.07 to 0.10. The additive genetic correlations involving volume-17 and height or diameter increased to high values of rA = 0.80 to 0.84 between eight to 10 years after planting. Before seven years the absolute values of juvenilemature correlations were much lower. The higher heritability of height made this trait the best criterion for early indirect selection to improve mature stem volume growth. Across these Coos Bay tests, early selection on stem height measured at 5-8 years after planting was estimated to produce almost 40% more gain per year in volume-17 compared with direct selection at 17 years on volume-17 itself. The recommendation for maximizing gain per year in mature volume of coastal Douglas-fir at Coos Bay is to select on height at 7-8 years when the mean height of trees in tests should be around 4.5 to 5.5 meters.

scholarly journals Impact of epistasis and QTL×environment interaction on the accumulation of seed mass of soybean (Glycine max L. Merr.)

2008 ◽  
Vol 90 (6) ◽  
pp. 481-491 ◽  
Author(s):  
YINGPENG HAN ◽  
WEILI TENG ◽  
DESHENG SUN ◽  
YUPING DU ◽  
LIJUAN QIU ◽  
...  
Keyword(s):  
Seed Development ◽  
Seed Weight ◽  
Developmental Stages ◽  
Environmental Control ◽  
Recombinant Inbred Lines ◽  
Seed Mass ◽  
Environment Interaction ◽  
Glycine Max L ◽  
Trait Locus ◽  
100 Seed Weight

SummaryThe accumulation of seed mass in soybean is affected by both genotype and environment. The aim of the present study was to measure additive, epistatic and quantitative trait locus (QTL)×environment (QE) interaction effects of QTLs on the development of 100-seed weight in a population of 143 F5 derived recombinant inbred lines (RILs) developed from the cross between the soybean cultivars ‘Charleston’ and ‘Dong Nong 594’. Broad-sense heritability of 100-seed weight from 30 days (30D) to 80D stages was 0·58, 0·52, 0·62, 0·60, 0·66 and 0·57, respectively. A total of 17 QTLs with conditional additive (a) effect and/or conditional additive×environment interaction (ae) effect at specific stages were identified in ten linkage groups by conditional mapping. Of them, only 4 QTLs had significant a effect or ae effect at different stages of seed development. Among QTLs with significant a effect, five acted positively and six acted negatively on seed development. A total of 35 epistatic pairwise QTLs of 100-seed weight were identified by conditional mapping at different developmental stages. Five pairs of QTL showed the additive×additive epistatic (aa) effect and 16 QTLs showed the aa×environment interaction (aae) effect at the different developmental stages. QTLs with aa effect as well with their environmental interaction effect appeared to vary at different developmental stages. Overall, the results indicated that 100-seed weight in soybean is under developmental, genetic and environmental control.

Phenotypic and genetic parameters for reproductive performance in a synthetic line of sheep

1981 ◽  
Vol 96 (1) ◽  
pp. 107-113 ◽  
Author(s):  
T. G. Martin ◽  
D. Nicholson ◽  
C. Smith ◽  
D. I. Sales
Keyword(s):  
Reproductive Performance ◽  
Genetic Parameters ◽  
Genetic Correlations ◽  
Reproductive Traits ◽  
Direct Selection ◽  
Sex Distribution ◽  
Regression Methods ◽  
Litter Weight ◽  
Heritability Estimates ◽  
Synthetic Line

SUMMARYData on 902 ewes (1755 records) bom over 7 years in the synthetic ABRO Dam Line were analysed by least squares. Reproductive traits of the ewe were not affected by whether she was a single or a twin or by the age of her dam. Ewe age had major effects on all reproductive traits. Litter weight traits were affected by the sex distribution and the age of the litter when weighed.Heritability estimates, both by half sib and regression methods, were low for litter size, low to moderate for litter weights, and higher for ewe and fleece weights. Genetic correlations among the litter-weight traits were high. Together with the heritability estimates, they indicated that selection on litter weight at birth (and perhaps other traits) might give a greater change in total litter weight at weaning, the main measure of ewe productivity and the objective in improvement, than would direct selection.

Opportunities for genetic improvement of lamb survival

2010 ◽  
Vol 50 (12) ◽  
pp. 1017 ◽  
Author(s):  
F. D. Brien ◽  
M. L. Hebart ◽  
D. H. Smith ◽  
J. E. Hocking Edwards ◽  
J. C. Greeff ◽  
...  
Keyword(s):  
Rectal Temperature ◽  
Selection Index ◽  
Genetic Correlations ◽  
Direct Selection ◽  
Reproduction Rate ◽  
Crown Rump Length ◽  
Selection For ◽  
Lamb Survival ◽  
Net Reproduction ◽  
Birth Time

Data on lamb survival and associated traits involving records from 15 192 lambs, 6308 dams and 284 sires from the Sheep CRC’s Information Nucleus were studied. Lamb survival to 3 days of age and to weaning was 85 and 80%, respectively, and heritability (±s.e.) was 0.014 ± 0.010 and 0.010 ± 0.010, respectively. Of the 14 traits recorded at birth, time taken for the lamb to bleat, rectal temperature and crown–rump length had the highest genetic correlations with lamb survival to weaning (–0.43 ± 0.32, 0.56 ± 0.33 and –0.38 ± 0.36, respectively). Under selection for a multi-trait objective including net reproduction rate (but not lamb survival), survival was predicted to decline genetically by 0.25 lambs weaned per 100 lambs born.year, although this was reversed to a gain of 0.20 lambs weaned per 100 lambs born.year by including the trait in the breeding objective and using 50 half-sib and 50 progeny records per selection candidate. Accuracy of selection for lamb survival was improved to 0.735 with a selection index of lamb survival to weaning, lamb ease, birth coat score, time taken to bleat, rectal temperature and crown–rump length, with the addition of 50 half-sibs and 50 progeny records per candidate. Our results suggest that unless actively incorporated into breeding objectives, lamb survival may genetically decline; however, gains are possible with direct selection using half-sib and progeny records. The addition of indirect selection criteria for lamb survival can further improve accuracy, up to 93.4%, but requires further investigation.

scholarly journals Synchronization of senescence and desynchronization of flowering in Arabidopsis thaliana

AoB Plants ◽  
2020 ◽  
Vol 12 (3) ◽  
Author(s):  
Matin Miryeganeh
Keyword(s):  
Arabidopsis Thaliana ◽  
Recombinant Inbred Lines ◽  
Life Stage ◽  
Reproductive Traits ◽  
Reproductive Timing ◽  
Qtl Detection ◽  
Timing Of Reproduction ◽  
Temperature Regimes ◽  
Trait Locus ◽  
Germination Timing

Abstract In a recent publication, we proposed that adjusting lifespan in order to synchronize senescence is important for timing of reproduction, and we quantified the synchrony of reproductive timing relative to germination timing. Here, in a second sequential seeding experiment (SSE), the germination timing of Arabidopsis thaliana accessions was manipulated and plants were then grown under two different temperature regimes. Life stage traits of plants in each temperature regime were analysed and it was evaluated whether the cohorts were grouped according to age and/or environmental conditions. While flowering-related traits showed desynchrony among cohorts, striking synchrony in the timing of senescence among cohorts for each group was found. A quantitative trait locus (QTL) analysis using a genotyped population of ‘Cvi/Ler’ recombinant inbred lines (RILs) was then conducted. Novel and known loci were assigned to flowering and senescence timing. However, senescence synchrony resulted in low variation in senescence time and weak QTL detection for flowering termination. Overlapping flowering and senescence genes with loci affecting either of those traits were found and suggest a potential interdependency of reproductive traits.

scholarly journals Genetic Control of Growth Traits in Shortleaf Pine in Missouri

2005 ◽  
Vol 29 (4) ◽  
pp. 200-204 ◽  
Author(s):  
David P. Gwaze ◽  
Ross Melick ◽  
Charly Studyvin ◽  
Mark Coggeshall
Keyword(s):  
Growth Traits ◽  
Genetic Correlations ◽  
Selection Criterion ◽  
Seed Orchard ◽  
Direct Selection ◽  
Pinus Echinata ◽  
Shortleaf Pine ◽  
Individual Tree ◽  
High Heritability ◽  
Heritability Estimates

Abstract Genetic parameters for height (HT), diameter (diameter at breast height [dbh]), and volume for a shortleaf pine (Pinus echinata Mill.) population in Missouri were estimated from a single progeny test comprising 44 half-sibling families assessed at 3, 5, 7, 10, and 17 years. Individual tree heritability estimates for growth traits at age 10 years and younger were high (0.30–0.43), and those at age 17 years were low (0.11–0.24). Heritability estimates for dbh were lower than those for HT. Family mean heritability estimates were moderate to high (0.32–0.66). Genetic correlations were higher than their phenotypic counterparts for all growth traits. Age-age genetic correlations for growth traits were moderate to high (0.68–0.98), indicating opportunity for early selection. Genetic correlations between different growth traits were high (0.81–1.00). Indirect selection on age 5- or 7-year HTs may be expected to produce over 25% more volume at 17 years compared with direct selection for volume at age 17 years. Efficiencies of selection suggest that early HT is a better selection criterion for volume at older ages than dbh because of the high heritability at young ages and strong juvenile-mature genetic correlations. Genetic gain in an unrogued seed orchard was predicted to be 6.7 and 27.2% for 10- and 17-year volume, respectively. These results suggest that growth traits in shortleaf pine in Missouri have high genetic variation, and genetic improvement was effective. South. J. Appl. For. 29(4):200–204.

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