scholarly journals Functional Redundancy in Ocean Microbiomes Controls Trait Stability

2021 ◽  
Author(s):  
Taylor M Royalty ◽  
Andrew Decker Steen
Keyword(s):  
Ecosystem Function ◽  
Latent Variable ◽  
Functional Redundancy ◽  
Ecosystem Functions ◽  
Polar Regions ◽  
Microbial Ecosystem ◽  
Physiochemical Parameters ◽  
Β Diversity ◽  
Microbial Ecosystems ◽  
Functional Richness

Advances in nucleic acid sequencing technology have revealed that, in many microbial ecosystems, the same ecosystem function or trait is performed by multiple species or taxa. Theory, developed in the context of macroecology, predicts that communities with high functional redundancy are less likely to lose functions due to species extinction compared to communities with low functional redundancy. It is not clear whether this is the case for microbial communities, particularly on the landscape scale. In part, the lack of quantitative measures for functional redundancy in microbial ecosystems has been prohibitive in addressing this question. We recently proposed a quantitative functional redundancy metric, contribution evenness, which measures how evenly taxa in a community contribute to an ecosystem function or trait. Using transcriptomes deposited in the Ocean Microbial Reference Gene Catalog (OM-RGC.v2), a catalog of genes and transcripts sequenced by the TARA Ocean expedition, we quantified the functional redundancy for 4,314 KEGG Orthologs (KOs) across 124 marine sites. Functional redundancy was highly correlated with a latent variable reflecting few ocean physiochemical parameters and was systematically higher at the poles than in non-polar regions. Functional richness β-diversity among non-polar sites was higher than that among polar sites, indicating that microbial ecosystem functions are more similar among polar sites than among non-polar sites. These observations combined provide evidence that functional redundancy influences microbial ecosystem function stability on spatiotemporal scales consistent with surface ocean mixing. We suggest that future changes in ocean physiochemistry will likely influence this stability.

Deconstructing biodiversity-ecosystem function relationships: Filtering of macroinvertebrate traits in a large river floodplain

2020 ◽  
Author(s):  
Natalie K. Rideout ◽  
Zacchaeus G. Compson ◽  
Wendy A. Monk ◽  
Meghann R. Bruce ◽  
Mehrdad Hajibabaei ◽  
...  
Keyword(s):  
Ecosystem Function ◽  
Structural Equation ◽  
Historical Change ◽  
Ecosystem Functions ◽  
Floodplain Wetlands ◽  
Environmental Filters ◽  
Invertebrate Communities ◽  
Species Response ◽  
Functional Richness ◽  
Wetland Habitats

AbstractThe Biodiversity-Ecosystem Function hypothesis postulates that higher biodiversity is correlated with ecosystem function by providing a high number of filled niches through species response types and resource use patterns. Through their high spatio-temporal habitat diversity, floodplains are highly productive ecosystems, supporting communities that are naturally resilient and highly diverse. We examined linkages among floodplain wetland habitats, invertebrate communities and their associated traits, and ecosystem function across 60 sites within the floodplain wetlands of the lower Wolastoq | Saint John River, New Brunswick, using structural equation modelling and Threshold Indicator Taxa ANalysis (TITAN2). We identified key environmental filters of invertebrate communities, namely linking increased niche differentiation through historical change, flood pulse dynamics, and macrophyte bed complexity with increased taxa and functional diversity. Examination of traits linked to ecosystem functions revealed that healthy wetlands with higher primary productivity were associated with greater functional evenness and richness, while habitat patches with increased decomposition rates had low functional richness, reflecting highly disturbed habitat. Our results highlight key differences between wetland and riverine ecosystems, relating to how critical functions support healthy wetland habitats by providing increased resilience to disturbance, here associated with differing levels of conservation protection.

Dominance determines fish community biomass in a temperate seagrass ecosystem

2019 ◽  
Author(s):  
Aaron Matthius Eger ◽  
Rebecca J. Best ◽  
Julia Kathleen Baum
Keyword(s):  
Species Richness ◽  
Ecosystem Function ◽  
Fish Community ◽  
Prey Capture ◽  
Fish Communities ◽  
Functional Trait ◽  
Ecosystem Functions ◽  
Community Biomass ◽  
Ecosystem Valuation ◽  
Species Abundances

Biodiversity and ecosystem function are often correlated, but there are multiple hypotheses about the mechanisms underlying this relationship. Ecosystem functions such as primary or secondary production may be maximized by species richness, evenness in species abundances, or the presence or dominance of species with certain traits. Here, we combined surveys of natural fish communities (conducted in July and August, 2016) with morphological trait data to examine relationships between diversity and ecosystem function (quantified as fish community biomass) across 14 subtidal eelgrass meadows in the Northeast Pacific (54° N 130° W). We employed both taxonomic and functional trait measures of diversity to investigate if ecosystem function is driven by species diversity (complementarity hypothesis) or by the presence or dominance of species with particular trait values (selection or dominance hypotheses). After controlling for environmental variation, we found that fish community biomass is maximized when taxonomic richness and functional evenness is low, and in communities dominated by species with particular trait values – those associated with benthic habitats and prey capture. While previous work on fish communities has found that species richness is positively correlated with ecosystem function, our results instead highlight the capacity for regionally prevalent and locally dominant species to drive ecosystem function in moderately diverse communities. We discuss these alternate links between community composition and ecosystem function and consider their divergent implications for ecosystem valuation and conservation prioritization.

scholarly journals Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome

2018 ◽  
Author(s):  
Ramiro Logares ◽  
Ina M. Deutschmann ◽  
Caterina. R. Giner ◽  
Anders K. Krabberød ◽  
Thomas S. B. Schmidt ◽  
...  
Keyword(s):  
Ecosystem Function ◽  
Sequence Data ◽  
Scale Effects ◽  
Dispersal Limitation ◽  
Global Scale ◽  
Global Ocean ◽  
Ecosystem Functions ◽  
Ecological Processes ◽  
Surface Ocean

ABSTRACTThe smallest members of the sunlit-ocean microbiome (prokaryotes and picoeukaryotes) participate in a plethora of ecosystem functions with planetary-scale effects. Understanding the processes determining the spatial turnover of this assemblage can help us better comprehend the links between microbiome species composition and ecosystem function. Ecological theory predicts thatselection,dispersalanddriftare main drivers of species distributions, yet, the relative quantitative importance of these ecological processes in structuring the surface-ocean microbiome is barely known. Here we quantified the role of selection, dispersal and drift in structuring surface-ocean prokaryotic and picoeukaryotic assemblages by using community DNA-sequence data collected during the global Malaspina expedition. We found that dispersal limitation was the dominant process structuring picoeukaryotic communities, while a balanced combination of dispersal limitation, selection and drift shaped prokaryotic counterparts. Subsequently, we determined the agents exerting abiotic selection as well as the spatial patterns emerging from the action of different ecological processes. We found that selection exerted via temperature had a strong influence on the structure of prokaryotic communities, particularly on species co-occurrences, a pattern not observed among communities of picoeukaryotes. Other measured abiotic variables had limited selective effects on microbiome structure. Picoeukaryotes presented a higher differentiation between neighbouring communities and a higher distance-decay when compared to prokaryotes, agreeing with their higher dispersal limitation. Finally, drift seemed to have a limited role in structuring the sunlit-ocean microbiome. The different predominance of ecological processes acting on particular subsets of the ocean microbiome suggests uneven responses to environmental change.SIGNIFICANCE STATEMENTThe global ocean contains one of the largest microbiomes on Earth and changes on its structure can impact the functioning of the biosphere. Yet, we are far from understanding the mechanisms that structure the global ocean microbiome, that is, the relative importance of environmentalselection,dispersaland random events (drift). We evaluated the role of these processes at the global scale, based on data derived from a circumglobal expedition and found that these ecological processes act differently on prokaryotes and picoeukaryotes, two of the main components of the ocean microbiome. Our work represents a significant contribution to understand the assembly of marine microbial communities, providing also insights on the links between ecological mechanisms, microbiome structure and ecosystem function.

scholarly journals Towards a function-first framework to make soil microbial ecology predictive

2021 ◽  
Author(s):  
Johannes Rousk ◽  
Lettice Hicks
Keyword(s):  
Microbial Community ◽  
Environmental Factors ◽  
Microbial Communities ◽  
Functional Response ◽  
Community Composition ◽  
Ecosystem Function ◽  
Bacterial Growth ◽  
Response Curve ◽  
Ecosystem Functions ◽  
Soil Microbial

<p>Soil microbial communities perform vital ecosystem functions, such as the decomposition of organic matter to provide plant nutrition. However, despite the functional importance of soil microorganisms, attribution of ecosystem function to particular constituents of the microbial community has been impeded by a lack of information linking microbial function to community composition and structure. Here, we propose a function-first framework to predict how microbial communities influence ecosystem functions.</p><p>We first view the microbial community associated with a specific function as a whole, and describe the dependence of microbial functions on environmental factors (e.g. the intrinsic temperature dependence of bacterial growth rates). This step defines the aggregate functional response curve of the community. Second, the contribution of the whole community to ecosystem function can be predicted, by combining the functional response curve with current environmental conditions. Functional response curves can then be linked with taxonomic data in order to identify sets of “biomarker” taxa that signal how microbial communities regulate ecosystem functions. Ultimately, such indicator taxa may be used as a diagnostic tool, enabling predictions of ecosystem function from community composition.</p><p>In this presentation, we provide three examples to illustrate the proposed framework, whereby the dependence of bacterial growth on environmental factors, including temperature, pH and salinity, is defined as the functional response curve used to interlink soil bacterial community structure and function. Applying this framework will make it possible to predict ecosystem functions directly from microbial community composition.</p>

The effect of bromoethanesulphonic acid on gas production during an in vitro rumen fermentation

1998 ◽  
Vol 22 ◽  
pp. 193-194
Author(s):  
D. R. Davies ◽  
E. L. Bakewell ◽  
D. K. Leemans ◽  
R. J. Merry
Keyword(s):  
Pressure Transducer ◽  
Rumen Fermentation ◽  
Gas Production ◽  
Production Technique ◽  
Microbial Ecosystem ◽  
Considerable Potential ◽  
Microbial Ecosystems ◽  
Presence And Absence ◽  
In Vitro Rumen Fermentation

Pressure transducer technology to measure gas production from microbial ecosystems has been utilized in a number of ways but predominantly for food evaluation. The approach also has considerable potential to increase our understanding of, and ability to manipulate, the rumen microbial ecosystem, but most research to date has concentrated on measurement of total gas production and not composition. The aim of this study was to extend the scope of the gas production technique to the quantitation of component gases, whilst investigating ruminal gas production in the presence and absence of methanogens.

scholarly journals Taxonomic and Functional Response of Millipedes (Diplopoda) to Urban Soil Disturbance in a Metropolitan Area

Insects ◽  
2019 ◽  
Vol 11 (1) ◽  
pp. 25 ◽  
Author(s):  
Zsolt Tóth ◽  
Elisabeth Hornung
Keyword(s):  
Metropolitan Area ◽  
Species Turnover ◽  
Chemical Properties ◽  
Soil Disturbance ◽  
Danube River ◽  
Functional Responses ◽  
Β Diversity ◽  
Functional Richness ◽  
Study Sites ◽  
And Function

Urbanization, as a major cause of local species extinction and biotic homogenization, drastically alters soil life. Millipedes are a key group of soil macrodetritivores and significantly influence soil quality, mainly through their essential role in nutrient cycling. Therefore, studying their taxonomic and functional responses to urban disturbance is crucial, as they contribute to the provision of several soil-related ecosystem services in cities. Differently degraded rural, urban forests and other woody patches (e.g., parks, gardens, and cemeteries) were sampled on Buda and Pest sides of the Budapest metropolitan area divided by the Danube River. We measured the most relevant physical and chemical properties of topsoil to characterize habitats. We applied an urbanization index based on vegetation cover and built-up area of the study sites to quantify urban intensity. The composition of the assemblages was determined by the division of the city along the Danube. Urbanization was associated with a reduction in species and functional richness of millipedes on both sides of Budapest. β diversity and species turnover increased with urban intensity. Urban disturbance was the main driver in assembly of taxonomic and functional community composition. A new species (Cylindroiulus caeruleocinctus (Wood, 1864)) to the fauna of Budapest was found. Detritivore invertebrates depend on leaf litter and other dead organic matter types, therefore microsites providing these resources greatly improve their survival. Due to increasing urban disturbance, it is recommended to provide appropriate detritus and shelter sites as part of the management of green spaces in order to maintain species richness, abundance, and function of species.

Modeled diversity effects on microbial ecosystem functions of primary production, nutrient uptake, and remineralization

Ecology ◽  
2014 ◽  
Vol 95 (1) ◽  
pp. 153-163 ◽  
Author(s):  
Nicole L. Goebel ◽  
Christopher A. Edwards ◽  
Michael J. Follows ◽  
Jonathan P. Zehr
Keyword(s):  
Primary Production ◽  
Nutrient Uptake ◽  
Ecosystem Functions ◽  
Microbial Ecosystem ◽  
Diversity Effects

scholarly journals Taking a closer look: disentangling effects of functional diversity on ecosystem functions with a trait-based model across hierarchy and time

2015 ◽  
Vol 2 (3) ◽  
pp. 140541 ◽  
Author(s):  
Frédéric Holzwarth ◽  
Nadja Rüger ◽  
Christian Wirth
Keyword(s):  
Ecosystem Model ◽  
Individual Performance ◽  
Ecosystem Functions ◽  
Root Turnover ◽  
Functional Richness ◽  
Annual Biomass ◽  
Component Processes ◽  
Hierarchical Nature ◽  
Underlying Mechanisms ◽  
Biodiversity Effects

Biodiversity and ecosystem functioning (BEF) research has progressed from the detection of relationships to elucidating their drivers and underlying mechanisms. In this context, replacing taxonomic predictors by trait-based measures of functional composition (FC)—bridging functions of species and of ecosystems—is a widely used approach. The inherent challenge of trait-based approaches is the multi-faceted, dynamic and hierarchical nature of trait influence: (i) traits may act via different facets of their distribution in a community, (ii) their influence may change over time and (iii) traits may influence processes at different levels of the natural hierarchy of organization. Here, we made use of the forest ecosystem model ‘LPJ-GUESS’ parametrized with empirical trait data, which creates output of individual performance, community assembly, stand-level states and processes. To address the three challenges, we resolved the dynamics of the top-level ecosystem function ‘annual biomass change’ hierarchically into its various component processes (growth, leaf and root turnover, recruitment and mortality) and states (stand structures, water stress) and traced the influence of different facets of FC along this hierarchy in a path analysis. We found an independent influence of functional richness, dissimilarity and identity on ecosystem states and processes and hence biomass change. Biodiversity effects were only positive during early succession and later turned negative. Unexpectedly, resource acquisition (growth, recruitment) and conservation (mortality, turnover) played an equally important role throughout the succession. These results add to a mechanistic understanding of biodiversity effects and place a caveat on simplistic approaches omitting hierarchical levels when analysing BEF relationships. They support the view that BEF relationships experience dramatic shifts over successional time that should be acknowledged in mechanistic theories.

Do Neotropical peccary species (Tayassuidae) function as ecosystem engineers for anurans?

2010 ◽  
Vol 26 (4) ◽  
pp. 407-414 ◽  
Author(s):  
Harald Beck ◽  
Paporn Thebpanya ◽  
Melissa Filiaggi
Keyword(s):  
Species Interactions ◽  
Ecosystem Engineering ◽  
Ecosystem Engineers ◽  
Ecosystem Functions ◽  
Breeding Sites ◽  
Anuran Species ◽  
Β Diversity ◽  
Water Surface Area ◽  
Dry Seasons ◽  
New Habitats

Abstract:The concept of ecosystem engineering has catalysed novel approaches and models for non-trophic species interactions and ecosystem functions. Ecosystem engineers physically modify abiotic and biotic environments, thereby creating new habitats that can be colonized by a new suite of species. In the Peruvian Amazonas, we tested whether peccaries (Tayassuidae) function as ecosystem engineers by creating and maintaining wallows. Such wallows could be critical aquatic habitats and breeding sites for anuran species during dry seasons. We compared hydroperiods of 21 peccary wallows and 13 naturally formed ponds across three dry seasons and found that wallows had a consistently higher mean water surface area than ponds. We also examined the pH, dissolved oxygen and temperature, and found no significant differences in these parameters between water bodies. Wallows had a significantly higher density of tadpoles, metamorphs and adult anurans, as well as higher β-diversity and species richness than ponds. This study not only provides the first systematic evidence of the ecosystem engineering processes of peccaries, but also reveals the positive consequences of such for anuran species.

scholarly journals Functional redundancy in natural pico-phytoplankton communities depends on temperature and biogeography

2020 ◽  
Vol 16 (8) ◽  
pp. 20200330
Author(s):  
Duyi Zhong ◽  
Luisa Listmann ◽  
Maria-Elisabetta Santelia ◽  
C-Elisa Schaum
Keyword(s):  
Ecosystem Function ◽  
Functional Redundancy ◽  
Biological Properties ◽  
Community Diversity ◽  
Sampling Location ◽  
Variable Regions ◽  
Carbon Cycles ◽  
Phytoplankton Communities ◽  
Aquatic Food ◽  
Warming World

Biodiversity affects ecosystem function, and how this relationship will change in a warming world is a major and well-examined question in ecology. Yet, it remains understudied for pico-phytoplankton communities, which contribute to carbon cycles and aquatic food webs year-round. Observational studies show a link between phytoplankton community diversity and ecosystem stability, but there is only scarce causal or empirical evidence. Here, we sampled phytoplankton communities from two geographically related regions with distinct thermal and biological properties in the Southern Baltic Sea and carried out a series of dilution/regrowth experiments across three assay temperatures. This allowed us to investigate the effects of loss of rare taxa and establish causal links in natural communities between species richness and several ecologically relevant traits (e.g. size, biomass production, and oxygen production), depending on sampling location and assay temperature. We found that the samples' biogeographical origin determined whether and how functional redundancy changed as a function of temperature for all traits under investigation. Samples obtained from the slightly warmer and more thermally variable regions showed overall high functional redundancy. Samples from the slightly cooler, less variable, stations showed little functional redundancy, i.e. function decreased when species were lost from the community. The differences between regions were more pronounced at elevated assay temperatures. Our results imply that the importance of rare species and the amount of species required to maintain ecosystem function even under short-term warming may differ drastically even within geographically closely related regions of the same ecosystem.

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