scholarly journals Soil inoculum identity and rate jointly steer microbiomes and plant communities in the field

2021 ◽  
Author(s):  
Xu Han ◽  
Yingbin Li ◽  
Yuhui Li ◽  
Xiaofang Du ◽  
Bing Li ◽  
...  

AbstractThe importance of soil inoculation to engineer soil microbiomes and ultimately entire ecosystems is becoming widely acknowledged. Inoculation with soil from different ecosystems can induce directional changes in soil and plant communities and promote the restoration of degraded ecosystems. However, it is unknown how such inoculations influence the soil microbiome, how much inoculum is needed, and whether inocula collected from similar ecosystems will steer the microbiome in different directions. We conducted a three-year soil inoculation field experiment at a degraded grassland and used two different soil inocula both from grasslands with three inoculation rates. Our results show that inoculation with soil that originates from different donor grasslands steers the soil microbiome as well as the plant communities at the inoculated site which was a degraded grassland into different directions and that these effects were stronger with increasing amount of soil used to inoculate. Inoculation with upland meadow soil introduced more keystone genera and resulted in more complex biotic networks in the soil than inoculation with meadow steppe soil. Our experiment highlights that soil inoculation can steer soil microbiomes in the field and that the direction and speed of development depend on the origin and the amount of soil inoculum used.

2012 ◽  
Vol 34 (2) ◽  
pp. 219 ◽  
Author(s):  
Megan K. Good ◽  
Jodi N. Price ◽  
Peter J. Clarke ◽  
Nick Reid

Clearing of native vegetation and changes to disturbance regimes have resulted in dense regeneration of native trees and shrubs in parts of Australia. The conversion of open vegetation to dense woodlands may result in changes to the composition of plant communities and ecosystem function if structure, composition and function are tightly linked. Widespread clearing of the floodplain tree Eucalyptus coolabah subsp. coolabah (coolibah), in New South Wales, Australia, has led to state and federal listings of coolibah woodland as an endangered ecological community. Dense regeneration of coolibah in the mid 1970s, however, also resulted in its listing as an ‘invasive native species’ in NSW, meaning it can be legally cleared under certain conditions. Dense regeneration could be a novel state dissimilar to the threatened community or it could represent the next generation of coolibah woodlands and may contribute to passive restoration of heavily cleared landscapes. This study investigated if dense stands are distinct from remnant woodland by comparing floristic composition of the ground-storey community and top-soil properties of four coolibah vegetation states: derived grassland, derived degraded grassland, dense regeneration and remnant woodland. Ground-storey composition was found to overlap broadly among states regardless of tree density. Most species were common to all states, although dense regeneration contained characteristic woodland species that were absent from grasslands. The carbon : nitrogen ratio of the soil was significantly higher in dense regeneration and remnant woodland than in either of the grassland states, indicating that the woody states are broadly similar in terms of nutrient cycling. The study demonstrates that structurally different vegetation states (grasslands, woodlands and dense regeneration) are not associated with distinct plant communities. The results also suggest that grazing management has a more pronounced effect on ground-storey composition of plant communities than tree density and that well managed derived grasslands and dense regeneration are floristically similar to remnant woodlands. Since dense regeneration and remnant woodlands are not floristically distinct from one another, dense regeneration could contribute to the conservation of endangered coolibah woodlands in cleared agricultural landscapes.


2021 ◽  
Author(s):  
Grigory Gladkov ◽  
Anastasiia Kimeklis ◽  
Rustam Tembotov ◽  
Arina Kichko ◽  
Evgeny Andronov ◽  
...  

<p>The soil microbiome is critical to the restoration of soils , destroyed by human activity. The dynamics of changes in the soil microbiome was investigated from the two overgrown gravel-sand quarry dumps in the North Caucasus (Kabardino-Balkaria, Russia). Samples were taken in the quarries of contrasting soil types (Calcareous Chernozem and Umbric Gleyic soils) under the various types of reclamation. Samples were taken from 10 points from a quarry with meadow soil and from 11 points from the Chernozem. The 16S ssu gene libraries were sequenced from soil DNA.The difference in microbiomes between the control points and the points where the soil is restored was statistically significant. The disturbed Gleyic soil is characterized by an increase in the representatives of Acidobacteria, for Chernozem of the genera <em>Niastella</em>, <em>Ramlibacter</em>, <em>Microvirga</em>. On the Umbric  Gleyic soil without reclamation, significant heterogeneity was shown, in contrast to Chernozem with different types of reclamation. In different soil types, the response of the soil microbiome to soil restoration was significantly different, which in turn should influence the choice of the strategy for the restoration of anthropogenically diturbed soils.</p>


2020 ◽  
Author(s):  
Marc W. Schmid ◽  
Sofia J. van Moorsel ◽  
Terhi Hahl ◽  
Enrica De Luca ◽  
Gerlinde B. Deyn ◽  
...  

AbstractPlant and soil microbial diversity are linked through a range of interactions, including the exchange of carbon and nutrients but also herbivory and pathogenic effects. Over time, associations between plant communities and their soil microbiota may strengthen and become more specific, resulting in stronger associations between plant and soil microbial diversity. We tested this hypothesis in a 4-year long field experiment in which we factorially combined plant community history and soil legacy with plant diversity (1, 2, 4, 8, 60 species). Plant community history and soil legacy refer to the presence (“old”) or absence (“new”) of a common history of plants and soils in 52 different plant species compositions during 8 years in a long-term biodiversity experiment in Jena, Germany. After 4 years of growth, we took soil samples in the new field experiment and determined soil bacterial and fungal composition in terms of operational taxonomic units (OTUs) using 16S rRNA gene and ITS DNA sequencing. Plant community history did not affect overall soil community composition but differentially affected bacterial richness and abundances of specific bacteria taxa in association with particular plant species compositions. Soil legacy markedly increased soil bacterial richness and evenness and decreased fungal evenness. Soil fungal richness increased with plant species richness, regardless of plant community history or soil legacy, with the strongest difference between plant monocultures and mixtures. Particular plant species compositions and functional groups were associated with particular bacterial and fungal community compositions. Grasses increased and legumes decreased fungal richness and evenness. Our findings indicate that as experimental ecosystems varying in plant diversity develop over 8 years, plant species associate with specific soil microbial taxa. This can have long-lasting effects on belowground community composition in re-assembled plant communities, as reflected in strong soil legacy signals still visible after 4 years of growing new plant communities. Effects of plant community history on soil communities are subtle and may take longer to fully develop.


2015 ◽  
pp. 129-147
Author(s):  
M. P. Tishchenko ◽  
A. Yu. Korolyuk ◽  
N. I. Makunina

The Tobol and the Irtysh watershed occupy the western part of West-Siberian plain. Area studied covers latitudinal band between 55° and 57° n. l. It includes the southern part of subtaiga subzone and northern part of forest-steppe zone. This territory has been used for agriculture since XVIIth century. In the middle of XXth century the local landscapes were represented by endless arable lands alternated with tiny patches of forests on the watersheds and swamps and solonchaks prevailing at lowlands. In the end of XXth century the large areas of arable lands, especially in northern part of mentioned area, were abandoned. Nowadays this area is covered by fallow meadows on different stages of demutation. Vegetation studies of the region have started in the end of XIXth century. One of the best scientific works on local grasslands was written by B. N. Gorodkov (1915). The spectrum of natural plant communities demonstrates some changes fr om south to north. These changes enclose both zonal and intrazonal vegetation. The southern part of the area studied belongs to forest-steppe zone. Its zonal vegetation is represented by small-leaved forests, grasslands (steppe meadows) and meadow steppes. Zonal vegetation of northern part — subtaiga subzone — includes only small-leaved forests. The watershed grasslands replace the cut-off forests. Intrazonal vegetation of southern part consists of various grasslands on salty soils and swamps predominated in the northern part. The border of forest-steppe and subtaiga represents a combination of zonal and intrazonal communities disturbed by man. The goal of this article is to reveal the diversity of grasslands on drained soils of mentioned area. The analysis of 151 geobotanical relevйs obtained fr om subtaiga and northern forest-steppe of Omskaya and Tyumenskaya administrative districts has been carried out. The syntaxonomy of the Tobol-and-the Irtysh watershed grasslands is represented by 6 associations, 4 subassociations and 2 communities of 4 alliances, 4 order and 2 classes. Subtaiga and northern forest steppe are charac­terized by different spectra of grasslands. This can be explained by a presence of wide range of saline soils in forest-steppe and their absence in subtaiga. The floristic composition of grasslands of forest-steppes zone includes the plants tolerant to soil salinity such as Artemisia pontica, Galatella biflora, Plantago maxi­ma, Eryngium planum, Saussurea amara, Limonium gmelinii. The listed species are rare in subtaiga grasslands while Festuca pratensis, Phleum pratense, Agrostis gigantea of alliance Festucion pratensis are dominated in subtaiga grassland meadows. Steppe meadows of this territory are represented by two classes. Northern forest-steppe subzone demonstrates the northern lim it of Festuco-Brometea (alliance Galatellion biflorae of order Festucetalia valesiacae). The associations Galatello biflorae–Calamagrostietum epigeii and Galio borealis–Artemisietum ponticae occupy the zonal positions. Their communities are characterize by high activity of meadow-steppe mesoxerophytes that are the diagnostic of the class Festuco-Brometea. The meadow mesophytes dominate in subtaiga steppe meadows absolutely; meadow-steppe species are rare. They are marked with a lack of diagnostic species of alliance Galatellion biflorae. They are ascribed to the class Molinio–Arrhenatheretea, order Galietalia veri and alliance Trifolion montani as the communities Filipendula stepposa–Cenolophium denudatum and Astragalus danicus–Potentilla anserinа. Forest steppe meadows of alliance Aconito barbati–Vicion unijugae (order Carici macrou­rae–Crepidetalia sibiricae, class Molinio-Arrhena­theretea) are usual for northern, subtaiga subzone of the Tobol and the Irtysh watershed. Diagnostic species list of the communities belonging to the order Carici macrourae–Crepidetalia sibiricae on West-Siberian plain is impoverished in comparison with the uplands and the mountains of South Siberia wh ere this order was described by Ermakov et al. (1999). We have revealed 2 new associations of alliance Aconito barbati–Vicion unijugae: Aegopodio podagrariae–Brachypodietum pinnati and Dracocephalo ruyschiani–Heracleetum sibiricae. In subtaiga subzone communities of these associations occupy the small well drained habitats between mesophytic forests and arable lands. The first association unites the xerophytic forest meadows with Aegopodium podagraria dominance, occurring only on right bank of the Ishim River. The second one includes forest meadows of subtaiga widely spread on the Tobol and the Irtysh watershed. Association Dracocephalo ruyschiani–Heracleetum sibiricae comprises two subassociations: D. r.–H. s. typicum and D. r.–H. s.molinietosum caeruleae. One of diagnostic species of the last mentioned subassociation is Molinia caerulea that is a common species of boreal wet meadows of Europe. The eastern border of this species distribution is on the left riverside of the Ishim River. Meadows of alliance Festucion pratensis of order Arrhenatheretalia are characteristic only for subtaiga, they belong to two associations. Meadows of subassociation Cirsio setosi–Phleetum pratensis pastinacetosum sylvestris are widespread. They are wide spread over the abandoned arable lands and rather monotonous by their floristic composition. The floristic peculiarity of plant communities is abundance of diagnostic species of classes Artemisietea и Chenopodietea. Meadows of Agrostio tenuis–Festucetum pratensis Yamalov 2005 occur on sandy soils; they present one of the first stages of pine forest demutation. Some of species are not characteristic for typical subassociation described by S. M. Yamalov (2005), therefore the meadows of this association on the Tobol and the Irtysh watershed are referred to a new subassociation A. t.–F. p. senecionetosum jacobaea.


2015 ◽  
Vol 40 (1) ◽  
pp. 49-58 ◽  
Author(s):  
Oksana O. Kucher

Abstract The results of an investigation of alien species that change the character, condition, form or nature of ecosystems over large areas (transformer species) in the flora of the Starobilsk grass-meadow steppe are presented. The check-list of alien plants includes over 386 species of vascular plants, of which 28 are invasive and 6 are transformer species. In this study, the data on the first records of alien species, their distribution history, ecology, occurrence in different plant communities and degree of naturalization were compiled. The distribution maps of transformer species are provided.


2016 ◽  
Vol 34 (3) ◽  
pp. 216-224 ◽  
Author(s):  
Sean B. Rapai ◽  
Shelley Hunt ◽  
Luke D. Bainard ◽  
Marie-Hélène Turgeon ◽  
Steven G. Newmaster

2013 ◽  
pp. 106-125 ◽  
Author(s):  
S. M. Yamalov ◽  
A. V. Bayanov ◽  
A. A. Muldashev ◽  
E. A. Averinova

The syntaxonomical analysis of meadow steppe vegetation of the order Festucetalia valesiacae Br.-Bl. et Tx. ex Br.- Bl. 1950 (class Festuco-Brometea Br.-Bl. et Tx. Ex Soó 1947) and their petrophytic variants in the South Urals (within Bashkortostan Republic) is carried out. The diversity of meadow steppe vegetation is presented by 1 class, 1 order, 1 alliance, 2 suballiance, 6 associations and 2 subassociations. Four new associations and two new subassociations are described. The associations are well differentiated geographically and floristically. It is shown that the main environmental factors influencing the floristic composition of plant communities are moisture and rocky habitats.


Hacquetia ◽  
2021 ◽  
Vol 20 (2) ◽  
pp. 263-272
Author(s):  
Vira V. Protopopova ◽  
Yakiv P. Didukh ◽  
Vasyl S. Tkachenko ◽  
Myroslav V. Shevera ◽  
Oksana O. Kucher ◽  
...  

Abstract Grindelia squarrosa (Pursh) Dunal. (Asteraceae) is a species with high invasiveness capacity in Ukraine, especially in the Steppe zone. The first data on the finding of escaped plants in Europe were recorded in the 40’s of the last century. There were three naturalization centres in Ukraine, from where the species began to spread. In the secondary range in Ukraine, G. squarrosa is characterized by high levels of seed productivity and germination, variable modes of dispersal, wide ecological and coenotic amplitudes and CSR-strategy. The trend continues with the spread of the species in western, north-western and northern directions, and today more than 300 localities confirming this trend are already known. In the past 20 years, 92 new localities have been recorded. G. squarrosa is a transformer, widespread in the southern regions of the Steppe zone. As a result, new plant communities are formed. In general, this species is recorded in communities of five vegetation classes. In terms of ecological indicators, the optimum of the species is in the Steppe zone. It can be predicted that, due to the potential ability of the species to adapt and under the influence of climatic change, there is a higher probability that the species will spread in the future in northern and western directions. The condition for such an expansion is disturbance of meadow-steppe fringe xeromesic communities, with decreased coenotic competition.


2004 ◽  
Vol 52 (2) ◽  
pp. 267 ◽  
Author(s):  
Nola K. D'Souza ◽  
Ian J. Colquhoun ◽  
Bryan L. Shearer ◽  
Giles E. St. J. Hardy

Five Acacia species native to Western Australia were assessed for their potential to protect the highly susceptible species Banksia grandis Wield from infection by the plant pathogen Phytophthora cinnamomi Rands. In a rehabilitated bauxite pit at Jarrahdale 55 km south-east of Perth and in a glasshouse trial, B. grandis planted either alone or with A. pulchella R.Br., A. urophylla Benth., A. extensa Lindl., A. lateriticola Maslin or A. drummondii Lindl., was soil inoculated with P. cinnamomi. It could only be shown that A. pulchella significantly protected B. grandis from P. cinnamomi infection in the rehabilitated bauxite pit trial up to 1 year after inoculation. This confirms the potential of this species for biological control of the pathogen in infested plant communities. The observed protection was not the result of a decrease in soil temperature or moisture. Protection was not emulated in a glasshouse trial where optimum environmental conditions favoured P. cinnamomi. Despite a delay in infection of B. grandis planted with Acacia spp., none of the five species definitively protected B. grandis from P. cinnamomi. However, in the glasshouse trial, A. pulchella, A. extensa, A. lateriticola and A. drummondii did significantly reduce the soil inoculum of P. cinnamomi, indicating a possible biological control effect on the pathogen. The mechanisms of biological control are discussed and the implications for management of rehabilitated bauxite mined areas and forests severely affected by P. cinnamomi are considered.


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