scholarly journals Protein composition of the occlusion bodies of Epinotia aporema granulovirus

2018 ◽  
Author(s):  
Tomás Masson ◽  
María Laura Fabre ◽  
María Leticia Ferrelli ◽  
Matías Luis Pidre ◽  
Víctor Romanowski
Keyword(s):  
Genomic Sequence ◽  
Horizontal Transmission ◽  
Protein Composition ◽  
Core Gene ◽  
Fusion Product ◽  
Larval Infection ◽  
The Family ◽  
Occlusion Bodies ◽  
Proteogenomic Mapping ◽  
Epinotia Aporema

AbstractWithin family Baculoviridae, members of the Betabaculovirus genus are employed as biocontrol agents against lepidopteran pests, either alone or in combination with selected members of the Alphabaculovirus genus. Epinotia aporema granulovirus (EpapGV) is a fast killing betabaculovirus that infects the bean shoot borer (E. aporema) and is a promising biopesticide. Because occlusion bodies (OBs) play a key role in baculovirus horizontal transmission, we investigated the composition of EpapGV OBs. Using mass spectrometry-based proteomics we could identify 56 proteins that are included in the OBs during the final stages of larval infection. Our data provides experimental validation of several annotated hypothetical coding sequences. Proteogenomic mapping against genomic sequence detected a previously unannotated ac110-like core gene and a putative translation fusion product of ORFs epap48 and epap49. Comparative studies of the proteomes available for the family Baculoviridae highlight the conservation of core gene products as parts of the occluded virion. Two proteins specific for betabaculoviruses (Epap48 and Epap95) are incorporated into OBs. Moreover, quantification based on emPAI values showed that Epap95 is one of the most abundant components of EpapGV OBs.

scholarly journals Protein composition of the occlusion bodies of Epinotia aporema granulovirus

PLoS ONE ◽  
2019 ◽  
Vol 14 (2) ◽  
pp. e0207735 ◽  
Author(s):  
Tomás Masson ◽  
María Laura Fabre ◽  
María Leticia Ferrelli ◽  
Matías Luis Pidre ◽  
Víctor Romanowski
Keyword(s):  
Protein Composition ◽  
Occlusion Bodies ◽  
Epinotia Aporema

Acerihabitans arboris gen. nov., sp. nov., a new member of the family Pectobacteriaceae isolated from sap drawn from Acer pictum

2021 ◽  
Author(s):  
Soon Dong Lee ◽  
In Seop Kim ◽  
Hanna Choe ◽  
Ji-Sun Kim
Keyword(s):  
Type Species ◽  
Sequence Similarity ◽  
Taxonomic Status ◽  
Amino Acid Identity ◽  
Core Gene ◽  
Phylogenomic Analysis ◽  
Rrna Gene ◽  
Content Type ◽  
Link Type ◽  
The Family

A Gram-negative, facultatively anaerobic bacterium, designated SAP-6T, was isolated from sap extracted from Acer pictum in Mt. Halla in Jeju, Republic of Korea and its precise taxonomic status was determined by a polyphasic approach. Cells were non-sporulating, motile, short rods and showed growth at 4–37 °C, pH 6.0–8.0 and 0–4% NaCl. Phylogenomic analysis based on 92 core gene sequences showed that strain SAP-6T belonged to the family Pectobacteriaceae and formed a distinct clade between members of the genera Sodalis and Biostraticola with gene support index of 89. The closest phylogenetic neighbours were Biostraticola tofi DSM 19580T (97.3% 16S rRNA gene sequence similarity) and Sodalis praecaptivus HS1T (96.8%), with the average amino acid identity values of 75.3% and 74.0%, respectively. The major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. The major isoprenoid quinones were Q-7 and Q-8. The predominant fatty acids were C16:0, C17:0 cyclo and summed feature 3. The DNA G+C content was 57.0%. On the basis of data presented here, strain SAP-6T (=KCTC 52622T=DSM 104038T) represents a novel species of a new genus in the family Pectobacteriaceae , for which the name Acerihabitans arboris gen. nov., sp. nov. is proposed.

scholarly journals Characterization of a Granulovirus Isolated from Epinotia aporema Wals. (Lepidoptera: Tortricidae) Larvae

2001 ◽  
Vol 67 (8) ◽  
pp. 3702-3706 ◽  
Author(s):  
Alicia Sciocco-Cap ◽  
Alejandro D. Parola ◽  
Alina V. Goldberg ◽  
Pablo D. Ghiringhelli ◽  
Vı́ctor Romanowski
Keyword(s):  
Biological Control ◽  
High Specificity ◽  
Biological Properties ◽  
Terminal Sequence ◽  
Amino Terminal ◽  
Soybean Pest ◽  
Occlusion Bodies ◽  
Amino Terminal Sequence ◽  
Epinotia Aporema

ABSTRACT A granulovirus (GV) isolated from Epinotia aporema(Lepidoptera: Tortricidae)—a major soybean pest—was studied in terms of its main morphological, biochemical, and biological properties. The ovoidal occlusion bodies were 466 by 296 nm in size, and their most prominent protein had an apparent molecular mass of 29 kDa. Its amino-terminal sequence was remarkably homologous to that of the granulins of other GVs. The DNA genome size was estimated to be 120 kbp. The high specificity and pathogenicity of this newly described granulovirus (EpapGV) indicate that it is indeed a good candidate for the biological control of this pest.

Nucleopolyhedrovirus infection in obliquebanded leafroller (Lepidoptera: Tortricidae)

2002 ◽  
Vol 134 (3) ◽  
pp. 303-309 ◽  
Author(s):  
I. Pronier ◽  
J. Paré ◽  
J-C Wissocq ◽  
C. Vincent
Keyword(s):  
Fat Body ◽  
Larval Mortality ◽  
Adult Emergence ◽  
Control Group ◽  
Choristoneura Rosaceana ◽  
Obliquebanded Leafroller ◽  
Naturally Occurring ◽  
The Family ◽  
Microscopic Studies ◽  
Occlusion Bodies

AbstractA virus isolated from obliquebanded leafroller, Choristoneura rosaceana (Harris), larvae collected in an apple, Malus domestica Borkh. (Rosaceae), orchard of Saint-Joseph-du-Lac (Quebec, Canada) was studied. Microscopic studies revealed that it was a uninucleocapsid nucleopolyhedrovirus from the family Baculoviridae. Larval mortality was approximately 75% (0% mortality in control group) in larvae infected as third instars immersed in a suspension of 1.7 × 108 occlusion bodies/mL. The average time for larval mortality was 23 ± 3 d after treatment. The majority (95.5%) of infected larvae died as fifth or sixth instars. Infection was observed primarily in fat body cells, and occasionally in the tracheal matrix and epidermis. Mean larval development time of infected larvae surviving to pupae was 20 ± 3 d, significantly greater than the 18 ± 3 d observed in control larvae. Adult emergence was significantly lower in pupae of treated larvae (73.6%) than in the control group (93.5%). Our work constitutes the first baseline study of naturally occurring virus of the obliquebanded leafroller.

Chloroplast genomes of seven species of Coryloideae (Betulaceae): structures and comparative analysis

Genome ◽  
2020 ◽  
Vol 63 (7) ◽  
pp. 337-348
Author(s):  
Guanglong Hu ◽  
Lili Cheng ◽  
Wugang Huang ◽  
Qingchang Cao ◽  
Lei Zhou ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Genetic Information ◽  
Molecular Breeding ◽  
Genomic Sequence ◽  
Phylogenetic Analyses ◽  
Phylogenetic Studies ◽  
Chloroplast Genomes ◽  
Mutational Hotspots ◽  
The Family ◽  
Identification Of Species

Coryloideae is a subfamily in the family Betulaceae consisting of four extant genera: Carpinus, Corylus, Ostrya, and Ostryopsis. We sequenced the plastomes of six species of Corylus and one species of Ostryopsis for comparative and phylogenetic analyses. The plastomes are 159–160 kb long and possess typical quadripartite cp architecture. The plastomes show moderate divergence and conserved arrangement. Five mutational hotspots were identified by comparing the plastomes of seven species of Coryloideae: trnG-atpA, trnF-ndhJ, accD-psaI, ndhF-ccsA, and ycf1. We assembled the most complete phylogenomic tree for the family Betulaceae using 68 plastomes. Our cp genomic sequence phylogenetic analyses placed Carpinus, Ostrya, and Ostryopsis in a clade together and left Corylus in a separate clade. Within the genus Corylus, these analyses indicate the existence of five subclades reflecting the phylogeographical relationships among the species. The data offer significant genetic information for the identification of species of the Coryloideae, taxonomic and phylogenetic studies, and molecular breeding.

scholarly journals Genomic sequence and biological characterization of a nucleopolyhedrovirus isolated from the summer fruit tortrix, Adoxophyes orana

2008 ◽  
Vol 89 (11) ◽  
pp. 2898-2908 ◽  
Author(s):  
Sally Hilton ◽  
Doreen Winstanley
Keyword(s):  
Genomic Sequence ◽  
Essential Amino Acids ◽  
Adoxophyes Orana ◽  
Applied Dose ◽  
Occlusion Bodies ◽  
Adoxophyes Honmai ◽  
The Uk ◽  
Summer Fruit ◽  
Laboratory Bioassays

Adoxophyes orana nucleopolyhedrovirus (AdorNPV) was isolated from overwintering larvae from an orchard in the UK. The nucleotide sequence of the AdorNPV DNA genome was determined and analysed. The genome contains 111724 bp and has a G+C content of 35.0 mol%. The analysis predicted 121 ORFs of 150 nt or larger. Of these putative genes, 118 were homologous to genes identified previously in the Adoxophyes honmai nucleopolyhedrovirus (AdhoNPV) genome (83.3–100 % aa identity), and three AdorNPV ORFs were unique. There were four small homologous regions that consisted of a similar core sequence and at the same relative positions in the genome as AdhoNPV, but they differed in the number of repeats and orientation. Some genes that have been reported to have major roles in baculovirus biology were either absent or truncated in the AdorNPV genome. These included chitinase, which is involved in the liquefaction of the host, and the C-terminal of the ecdysteroid UDP-glucosyltransferase (egt) protein, which was truncated by 149 aa compared with AdhoNPV, with essential amino acids absent. The AdorNPV genome encoded two inhibitor of apoptosis (iap) genes compared with three in AdhoNPV and three bro genes compared with four in AdhoNPV. The susceptibility of A. orana larvae to AdorNPV was evaluated in laboratory bioassays using inoculation by microdroplet feeding and applied dose assays. LD50 for neonates was 56 occlusion bodies rising to 2.3×104 for fifth instar larvae. Median survival time values using an LD80 dose were 8.8 days for neonates and 7.0 days for fifth instar larvae.

scholarly journals The importance of environmentally-acquired bacterial symbionts for the squash bug (Anasa tristis), a significant agricultural pest

2021 ◽  
Author(s):  
Tarik S. Acevedo ◽  
Gregory P. Fricker ◽  
Justine R Garcia ◽  
Tiffany Alcaide ◽  
Aileen Berasategui ◽  
...  
Keyword(s):  
Horizontal Transmission ◽  
Development Stage ◽  
Bacterial Symbionts ◽  
Complete Understanding ◽  
Anasa Tristis ◽  
Squash Bug ◽  
The Family ◽  
Insect Symbionts ◽  
Midgut Crypts ◽  
Bacterial Plant Pathogen

Most insects maintain associations with microbes that shape their ecology and evolution. Such symbioses have important applied implications when the associated insects are pests or vectors of disease. The squash bug, Anasa tristis (Coreoidea: Coreidae), is a significant pest of human agriculture in its own right and also causes damage to crops due to its capacity to transmit a bacterial plant pathogen. Here, we demonstrate that complete understanding of these insects requires consideration of their association with bacterial symbionts in the family Burkholderiaceae. Isolation and sequencing of bacteria housed in midgut crypts in these insects indicates that these bacteria are consistent and dominant members of the crypt-associated bacterial communities. These symbionts are closely related to Caballeronia spp. associated other true bugs in the superfamiles Lygaeoidea and Coreoidea. Fitness assays with representative Burkholderiaceae strains indicate that the association can significantly increase survival and decrease development time, though strains do vary in the benefits that they confer to their hosts, with Caballeronia spp. providing the greatest benefit. Experiments designed to assess transmission mode indicate that unlike many other beneficial insect symbionts, the bacteria are not acquired from parents before or after hatching but are instead acquired from the environment after molting to a later development stage. The bacteria do, however, have the capacity to escape adults to be transmitted to later generations, leaving the possibility for a combination of indirect vertical and horizontal transmission.

scholarly journals Complete Genome Sequence of Macrobrachium rosenbergii Golda Virus (MrGV) from China

Animals ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 27
Author(s):  
Fanzeng Meng ◽  
Yiting Wang ◽  
Guohao Wang ◽  
Tao Hu ◽  
La Xu ◽  
...  
Keyword(s):  
Nucleocapsid Protein ◽  
Genomic Sequence ◽  
Clinical Signs ◽  
Macrobrachium Rosenbergii ◽  
Open Reading Frames ◽  
Freshwater Prawn ◽  
Ribosomal Frameshift ◽  
Giant Freshwater Prawn ◽  
The Family ◽  
Reading Frames

In a meta-transcriptome study of the giant freshwater prawn Macrobrachium rosenbergii sampled in 2018 from a hatchery, we identified a variant of Macrobrachium rosenbergii golda virus (MrGV) in postlarvae without clinical signs. The virus belongs to the family Roniviridae, and the genome of this MrGV variant, Mr-18, consisted of 28,957 nucleotides, including 4 open reading frames (ORFs): (1) ORF1a, encoding a 3C-like protein (3CLP) (4933 aa); (2) ORF1b, encoding a replicase polyprotein (2877 aa); (3) ORF2, encoding a hypothetical nucleocapsid protein (125 aa); and (4) ORF3, encoding a glycoprotein (1503 aa). ORF1a overlaps with ORF1b with 40 nucleotides, where a −1 ribosomal frameshift with slippage sequence 5′-G14925GGUUUU14931-3′ produces the pp1ab polyprotein. The genomic sequence of Mr-18 shared 97.80% identity with MrGV LH1-2018 discovered in Bangladesh. The amino acid sequence identities between them were 99.30% (ORF1a), 99.60% (ORF1b), 100.00% (ORF2), and 99.80% (ORF3), respectively. Phylogenetic analysis of the RNA-dependent RNA polymerase (RdRp) proteins revealed that they clustered together and formed a separate cluster from the genus Okavirus. The finding of MrGV in China warrants further studies to determine its pathogenicity and prevalence within the region.

scholarly journals The Importance of Environmentally Acquired Bacterial Symbionts for the Squash Bug (Anasa tristis), a Significant Agricultural Pest

2021 ◽  
Vol 12 ◽  
Author(s):  
Tarik S. Acevedo ◽  
Gregory P. Fricker ◽  
Justine R. Garcia ◽  
Tiffanie Alcaide ◽  
Aileen Berasategui ◽  
...  
Keyword(s):  
Bacterial Communities ◽  
Horizontal Transmission ◽  
Bacterial Symbionts ◽  
Complete Understanding ◽  
Anasa Tristis ◽  
Squash Bug ◽  
The Family ◽  
Insect Symbionts ◽  
Midgut Crypts ◽  
Bacterial Plant Pathogen

Most insects maintain associations with microbes that shape their ecology and evolution. Such symbioses have important applied implications when the associated insects are pests or vectors of disease. The squash bug, Anasa tristis (Coreoidea: Coreidae), is a significant pest of human agriculture in its own right and also causes damage to crops due to its capacity to transmit a bacterial plant pathogen. Here, we demonstrate that complete understanding of these insects requires consideration of their association with bacterial symbionts in the family Burkholderiaceae. Isolation and sequencing of bacteria housed in the insects’ midgut crypts indicates that these bacteria are consistent and dominant members of the crypt-associated bacterial communities. These symbionts are closely related to Caballeronia spp. associated with other true bugs in the superfamilies Lygaeoidea and Coreoidea. Fitness assays with representative Burkholderiaceae strains indicate that the association can significantly increase survival and decrease development time, though strains do vary in the benefits that they confer to their hosts, with Caballeronia spp. providing the greatest benefit. Experiments designed to assess transmission mode indicate that, unlike many other beneficial insect symbionts, the bacteria are not acquired from parents before or after hatching but are instead acquired from the environment after molting to a later developmental stage. The bacteria do, however, have the capacity to escape adults to be transmitted to later generations, leaving the possibility for a combination of indirect vertical and horizontal transmission.

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