A novel hydrogen-bonding N-oxide–sulfonamide–nitro N—H...O synthon determining the architecture of benzenesulfonamide cocrystals

Author(s):  
Kinga Wzgarda-Raj ◽  
Agnieszka J. Rybarczyk-Pirek ◽  
Sławomir Wojtulewski ◽  
Marcin Palusiak

The structures of novel cocrystals of 4-nitropyridine N-oxide with benzenesulfonamide derivatives, namely, 4-nitrobenzenesulfonamide–4-nitropyridine N-oxide (1/1), C5H4N2O3·C6H6N2O4S, and 4-chlorobenzenesulfonamide–4-nitropyridine N-oxide (1/1), C6H6ClNO2S·C5H4N2O3, are stabilized by N—H...O hydrogen bonds, with the sulfonamide group acting as a proton donor. The O atoms of the N-oxide and nitro groups are acceptors in these interactions. The latter is a double acceptor of bifurcated hydrogen bonds. Previous studies on similar crystal structures indicated competition between these functional groups in the formation of hydrogen bonds, with the priority being for the N-oxide group. In contrast, the present X-ray studies indicate the existence of a hydrogen-bonding synthon including N—H...O(N-oxide) and N—H...O(nitro) bridges. We present here a more detailed analysis of the N-oxide–sulfonamide–nitro N—H...O ternary complex with quantum theory computations and the Quantum Theory of Atoms in Molecules (QTAIM) approach. Both interactions are present in the crystals, but the O atom of the N-oxide group is found to be a more effective proton acceptor in hydrogen bonds, with an interaction energy about twice that of the nitro-group O atoms.

2018 ◽  
Vol 2018 ◽  
pp. 1-15 ◽  
Author(s):  
Paweł Misiak ◽  
Alina T. Dubis ◽  
Andrzej Łapiński

The formation of an intramolecular hydrogen bond in pyrrolo[1,2-a]pyrazin-1(2H)-one bicyclic diazoles was analyzed, and the influence of N-substitution on HB formation is discussed in this study. B3LYP/aug-cc-pVDZ calculations were performed for the diazole, and the quantum theory of atoms in molecules (QTAIM) approach as well as the natural bond orbital (NBO) method was applied to analyze the strength of this interaction. It was found that the intramolecular hydrogen bond that closes an extra ring between the C=O proton acceptor group and the CH proton donor, that is, C=O⋯H–C, influences the spectroscopic properties of pyrrolopyrazine bicyclic diazoles, particularly the carbonyl frequencies. The influence of N-substitution on the aromaticity of heterocyclic rings is also discussed in this report.


1967 ◽  
Vol 45 (19) ◽  
pp. 2135-2141 ◽  
Author(s):  
P. J. Krueger

The infrared absorption spectra of partially deuterated o-phenylenediamine and 4,5-di-methyl-, 4-methyl-, and 4-chloro-o-phenylenediamine in dilute CCl4 solution show double intramolecular [Formula: see text] hydrogen bonds in which the two NHD groups are equivalent and each group acts as both a proton donor and a proton acceptor. The ring substituent effect on this interaction in these compounds is small. In 4-methoxy-o-phenylenediamine, the amino groups are not equivalent, but double intramolecular hydrogen bonds are still present. In 4-nitro-o-phenylenediamine, only one intramolecular [Formula: see text] hydrogen bond appears to exist. The effect of N-substitution on some of these observations is discussed.


2010 ◽  
Vol 8 (3) ◽  
pp. 519-529 ◽  
Author(s):  
Marilena Ferbinteanu ◽  
Alina Zaharia ◽  
Mihai Gîrţu ◽  
Fanica Cimpoesu

AbstractIn this work we perform a detailed analysis of the non-covalent effects that build the lattice of the [Fe(bpca)2][Er(NO3)3(H2O)4]NO3 compound, made of cationic d units [Fe(bpca)2]+,(where Hbpca is bis(2-pyridilcarbonyl)amine), neutral f complexes [Er(NO3)3(H2O)4], and the NO3- counter-ion. All these units are interlinked by hydrogen bonds, their assembling benefiting also from electrostatic effects. A particularly interesting sub-ensemble of the crystal is the linear chain formed by the lanthanide units. Going beyond the usual qualitative description of the supramolecular assembling, we performed electron structure calculations on appropriate models related to the experimental structures. The formation energies of d and f coordination bonds are estimated in semi-quantitative manner, being compared with the intermolecular ones, due to hydrogen bonding and dipolar interactions.


ChemPhysChem ◽  
2004 ◽  
Vol 5 (4) ◽  
pp. 481-487 ◽  
Author(s):  
Célia Fonseca Guerra ◽  
F. Matthias Bickelhaupt ◽  
Evert Jan Baerends

Author(s):  
Michael H. Abraham ◽  
Philip P. Duce ◽  
David V. Prior ◽  
Derek G. Barratt ◽  
Jeffrey J. Morris ◽  
...  

1999 ◽  
Vol 54 (11) ◽  
pp. 1420-1430 ◽  
Author(s):  
Oliver Moers ◽  
Karna Wijaya ◽  
Dagmar Henschel ◽  
Armand Blaschette ◽  
Peter G. Jones

In order to examine packing preferences and hydrogen bond patterns in secondary ammonium salts, low-temperature X-ray analyses were conducted for six compounds of general formula R2NH2+MeSO2)2 N-, where R2NH2+ = Me2NH2+ (1, triclinic, space group P1̄̄), MeEtNH2+,(2, monoclinic, P21/c), Et2NH2+ (3. triclinic, P1), pyrrolidinium (4, triclinic, P1), piperidinium (5, monoclinic, C2/c) or morpholinium (6, monoclinic, P21/c). Throughout the series, the constant anion retains a rigid conformation approximating to C2 symmetry and thus provides a geometrically reliable set of five potential hydrogen bond acceptors. Nevertheless, the six compounds exhibit a variety of unpredictable packing patterns, showing that, in unfavourable cases, the steric demands of molecular fragments not involved in hydrogen bonding can substantially alter the structure of a family of ionic crystals. In the present structures, the NH2+ donor groups form hydrogen bonds N+-H···N-/O to two (3-6) or three (1,2) adjacent anions. The occurrence of various two-, three- and four-centre hydrogen bonds leads to six different patterns, resulting in cation-anion layers (1, 2), discrete formula unit dimers (3, 4) or cation-anion chains (5, 6); in the morpholinium salt 6, these chains are associated into layers by a weak N+ - H ··· O(cation) interaction. In each of the crystal packings, short C-H···O contacts with H···O ≤ 270 pm and C-H ···O ≥ 130° are observed.


Author(s):  
Jan Vícha ◽  
Cina Foroutan-Nejad ◽  
Michal Straka

Illusive Au<sup>I/III</sup>···H hydrogen bonds and their effect on structure and dynamics of molecules have been a matter of debate. While a number of X-ray studies reported gold compounds with short Au<sup>I/III</sup>···H contacts, a solid spectroscopic evidence for Au<sup>I/III</sup>···H bonding has been missing. Recently<a></a><a>, Bakar <i>et al.</i></a> (NATURE COMMUNICATIONS 8:576) reported compound with four short Au···H contacts (2.61­–2.66 Å; X-ray determined). Assuming the central cluster be [Au<sub>6</sub>]<sup>2+</sup>and observing the <sup>1</sup>H (<sup>13</sup>C) NMR resonances at relevant H(C) nuclei deshielded with respect to precursor compound, the authors concluded with reservations that <i>“the present Au···H–C interaction is a kind of “hydrogen bond”, where the [Au<sub>6</sub>]<sup>2+</sup>serves as an acceptor”</i>. Here, we show that the Au<sub>6</sub>cluster in their compound bears negative charge and the Au···H contacts lead to a weak (~1 kcal/mol) auride···hydrogen bonding interactions, though unimportant for the overall stability of<b></b>the molecule. Additionally, computational analysis of NMR chemical shifts reveals that the deshielding effects at respective hydrogen nuclei are not directly related to Au···H–C hydrogen bonding .


2007 ◽  
Vol 63 (2) ◽  
pp. 303-308 ◽  
Author(s):  
Andrew Parkin ◽  
Martin Adam ◽  
Richard I. Cooper ◽  
Derek S. Middlemiss ◽  
Chick C. Wilson

A new polymorph of 2,4-dihydroxybenzoic acid is reported. The structure was characterized by multiple-temperature X-ray diffraction and solid-state DFT computations. The material shows a geometric pattern of hydrogen bonding consistent with cooperativity between the intermolecular carboxylic acid dimer and intramolecular hydrogen bonds. The presence of proton disorder within this hydrogen-bond system, which would support such a cooperative model, was not fully ruled out by the initial X-ray studies. However, solid-state calculations on the three possible end-point tautomers indicate that the dominant crystallographically observed configuration is substantially lower in energy than the other tautomers (by at least 9 kJ mol−1), indicating that no disorder should be expected. It is therefore concluded that no disorder is observed either in the intra- or intermolecular hydrogen bonds of the title compound and that the cooperativity between the hydrogen bonds is not present within the temperature range studied.


2004 ◽  
Vol 60 (5) ◽  
pp. 598-608 ◽  
Author(s):  
Orde Quentin Munro ◽  
Lynette Mariah

The single-crystal X-ray diffraction analysis of 2-{[(4-nitrophenoxy)sulfonyl]oxy}phenyl 4-nitrophenyl sulfate (4) reveals that an interesting intermolecular or extended structure (a one-dimensional hydrogen-bonded polymer) is formed because of pairs of intermolecular (aryl)C—H...O(nitro) hydrogen bonds between the C 2 symmetry monomer units. The axis of the hydrogen-bonded polymer runs co-linear with the [101] face diagonal of the monoclinic unit cell. Molecular mechanics calculations using a modified version of the MM+ force field and a random conformational search algorithm have been used to locate the important low-energy in vacuo conformations of (4). The MM-calculated conformation of (4) that most closely matches the X-ray structure lies some 26.5 kJ mol−1 higher in energy than the global minimum-energy conformation, consistent with the notion that the crystallographically observed molecular architecture of (4) is a local energy minimum in the absence of its crystal lattice environment. Since the X-ray conformation of (4) was correctly calculated only when all of the neighbouring molecules in the crystal lattice were included in the simulation, hydrogen bonding and other non-bonded interactions in the crystal lattice clearly dictate the experimentally observed conformation of (4). Quantum chemical calculations (AM1 method) confirm the critical role played by the intermolecular (aryl)C—H...O(nitro) hydrogen bonds in controlling the crystallographically observed conformation of (4) and show that self-recognition in this system by hydrogen bonding is favoured on electrostatic grounds. Collectively, the molecular simulations suggest that because the lowest-energy molecular conformation of (4) does not permit the formation of an extended hydrogen-bonded `supramolecular' structure, it is not the preferred conformation in the crystalline solid state.


1984 ◽  
Vol 62 (4) ◽  
pp. 725-728 ◽  
Author(s):  
J. Zukerman-Schpector ◽  
E. E. Castellano ◽  
G. Oliva ◽  
A. C. Massabni ◽  
A. Derbli Pinto

The crystal structures of the title compounds have been determined from diffractometric X-ray data and refined by full-matrix least-squares to final R factors of 0.057 and 0.071 for the oxalic and perchloric adducts respectively.The space groups and cell dimensions are: (oxalic) C2/c, a = 16.516(3), b = 11.685(2), c = 12.587(3) Å, β = 107.11(2)° with Z = 4; (perchloric) Pbca, a = 16.204(3), b = 15.329(6), c = 10.296(3) Å with Z = 8.In both structures the complex is stabilized by a strong hydrogen bond between the N(2) of the 1-phenyl-3,5-dimethylpyrazole (PDMP) group and an oxygen of the acid. In the oxalic adduct the PDMP group is neutral and the N(2) atom acts as a proton acceptor, while in the perchloric complex the PDMP group is positively charged with the N(2) atom acting as a proton donor.


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