Ambient ultraviolet radiation in the Arctic reduces root biomass and alters microbial community composition but has no effects on microbial biomass

2005 ◽  
Vol 11 (4) ◽  
pp. 564-574 ◽  
Author(s):  
R. Rinnan ◽  
M. M. Keinanen ◽  
A. Kasurinen ◽  
J. Asikainen ◽  
T. K. Kekki ◽  
...  
2002 ◽  
Vol 68 (8) ◽  
pp. 3859-3866 ◽  
Author(s):  
W. Shi ◽  
J. Becker ◽  
M. Bischoff ◽  
R. F. Turco ◽  
A. E. Konopka

ABSTRACT Microbial community composition and activity were characterized in soil contaminated with lead (Pb), chromium (Cr), and hydrocarbons. Contaminant levels were very heterogeneous and ranged from 50 to 16,700 mg of total petroleum hydrocarbons (TPH) kg of soil−1, 3 to 3,300 mg of total Cr kg of soil−1, and 1 to 17,100 mg of Pb kg of soil−1. Microbial community compositions were estimated from the patterns of phospholipid fatty acids (PLFA); these were considerably different among the 14 soil samples. Statistical analyses suggested that the variation in PLFA was more correlated with soil hydrocarbons than with the levels of Cr and Pb. The metal sensitivity of the microbial community was determined by extracting bacteria from soil and measuring [3H]leucine incorporation as a function of metal concentration. Six soil samples collected in the spring of 1999 had IC50 values (the heavy metal concentrations giving 50% reduction of microbial activity) of approximately 2.5 mM for CrO4 2− and 0.01 mM for Pb2+. Much higher levels of Pb were required to inhibit [14C]glucose mineralization directly in soils. In microcosm experiments with these samples, microbial biomass and the ratio of microbial biomass to soil organic C were not correlated with the concentrations of hydrocarbons and heavy metals. However, microbial C respiration in samples with a higher level of hydrocarbons differed from the other soils no matter whether complex organic C (alfalfa) was added or not. The ratios of microbial C respiration to microbial biomass differed significantly among the soil samples (P < 0.05) and were relatively high in soils contaminated with hydrocarbons or heavy metals. Our results suggest that the soil microbial community was predominantly affected by hydrocarbons.


2021 ◽  
Author(s):  
Anders Dalhoff Bruhn ◽  
Colin A. Stedmon ◽  
Jérôme Comte ◽  
Atsushi Matsuoka ◽  
Neik Jesse Speetjens ◽  
...  

&lt;p&gt;Climate warming is accelerating erosion rates along permafrost-dominated Arctic coasts. To study the impact of erosion on marine microbial community composition and growth in the Arctic coastal zone, dissolved organic matter (DOM) from three representative glacial landscapes (fluvial, lacustrine and moraine) along the Yukon coastal plain, are provided as substrate to marine bacteria using a chemostat setup. Our results indicate that chemostat cultures with a flushing rate of approximately a day provide comparable DOM bioavailability estimates to those from bottle experiments lasting weeks to months. DOM composition (inferred from UV-Visible spectroscopy) and biodegradability (inferred from DOC concentration, bacterial production and respiration) significantly differed between the three glacial deposit types. DOM from fluvial and moraine deposit types shows more terrestrial characteristics with lower aromaticity (S&lt;sub&gt;R&lt;/sub&gt;: 0.63 (&amp;#177;0.02), SUVA&lt;sub&gt;254&lt;/sub&gt;: 1.65 (&amp;#177;0.06) respectively S&lt;sub&gt;R&lt;/sub&gt;: 0.68 (&amp;#177;0.00), SUVA&lt;sub&gt;254&lt;/sub&gt;: 1.17 (&amp;#177;0.06)) compared to the lacustrine deposit type (S&lt;sub&gt;R&lt;/sub&gt;: 0.71 (&amp;#177;0.02), SUVA&lt;sub&gt;254&lt;/sub&gt;: 2.15 (&amp;#177;0.05)). The difference in composition of DOM corresponds with the development of three distinct microbial communities, with a dominance of Alphaproteobacteria for fluvial and lacustrine deposit types (relative abundance 0.67 and 0.87 respectively) and a dominance of Gammaproteobacteria for moraine deposit type (relative abundance 0.88). Bacterial growth efficiency (BGE) is 66% for moraine-derived DOM, while 13% and 28% for fluvial-derived and lacustrine-derived DOM respectively. The three microbial communities therefore differ in their net effect on DOM utilization. The higher BGE value for moraine-derived DOM was found to be due to a larger proportion of labile colourless DOM. The results from this study, therefore indicate a substrate control of marine microbial community composition and activities, suggesting that the effect of permafrost thaw and erosion in the Arctic coastal zone will depend on subtle differences in DOM related to glacial deposit types. These differences further determines the speed and extent of DOM mineralization and thereby carbon channelling into biomass in the microbial food web. We therefore conclude that marine microbes strongly respond to the input of terrestrial DOM released during coastal erosion of Arctic glacial landscapes.&lt;/p&gt;


Forests ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 428 ◽  
Author(s):  
Weicheng Li ◽  
Haiyan Sheng ◽  
Yaoyao Liu ◽  
Rui Zhang ◽  
Desy Ekawati ◽  
...  

The effect of nitrogen (N) deposition on N limitation, phosphorus (P) limitation and the related soil and microbial stoichiometries remains unclear. A simulated nitrogen deposition (SND) experiment (control, ambient, medium and high) and molecular techniques (high-throughput sequencing of 16S and ITS) were conducted to examine the variations in abiotic and biotic properties and to describe the responses of microbial (bacteria and fungi) adaptation strategies in a moso bamboo (Phyllostachys edulis J. Houzeau) forest following SND. Soil water content (SWC) was positively correlated with the microbial community composition. Observed increases in total N and nitrate N contents and decreased ammonia N suggested that SND influenced nitrification. Chao1 and F:B showed that bacteria were more sensitive to SND than fungi. PCoA and linear discriminant analysis (LDA), coupled with effect size measurements (LefSe), confirmed that microbial community composition, including the subgroups (below class level), responded to SND by employing different adaptation strategies. Soil C:N indicated that the soil of the moso bamboo forest was under N limitation prior to SND. The increase in total P (TP), available P (AP) and microbial biomass P (MBP) suggested the acceleration of soil P cycling. Microbial biomass C (MBC) and microbial biomass N (MBN) were not affected by SND, which led to a significant shift in MBC:MBP and MBN:MBP, suggesting that P utilization per unit of C or N was promoted. There was a negative gradient correlation between the fungal community composition and MBC:MBP, while bacteria were positively correlated with MBN:MBP. The results illustrated that the response of fungi to MBC was more sensitive than that of bacteria in the process of accelerated P cycling, while bacteria were sensitive to MBN. Prior to P limitation, SND eliminated the soil N limitation and stimulated soil microorganisms to absorb more P, resulting in an increase in MBP, but did not alter MBC or MBN. This study contributes to our understanding of the adaptation strategies of fungi and bacteria and their responses to soil and microbial stoichiometries.


2020 ◽  
Author(s):  
Kathrin Busch ◽  
Ulrike Hanz ◽  
Furu Mienis ◽  
Benjamin Müller ◽  
Andre Franke ◽  
...  

Abstract. Seamounts represent ideal systems to study the influence and interdependency of environmental gradients at a single geographic location. These topographic features represent a prominent habitat for various forms of life, including microbiota and macrobiota, spanning benthic as well as pelagic organisms. While it is known that seamounts are globally abundant structures, it still remains unclear how and to which extend the complexity of the seafloor is intertwined with the local oceanographic mosaic, biogeochemistry and microbiology of a seamount ecosystem. Along these lines, the present study aimed to explore whether and to which extend seamounts can have an imprint on the microbial community composition of seawater and of sessile benthic invertebrates, sponges. For our high-resolution sampling approach of microbial diversity (16S rRNA gene Amplicon sequencing) along with measurements of inorganic nutrients and other biogeochemical parameters, we focused on the Schulz Bank seamount ecosystem, a sponge ground ecosystem which is located on the Arctic Mid-Ocean Ridge. Seawater samples were collected at two sampling depths (mid-water: MW, and near-bed water: BW) from a total of 19 sampling sites. With a clustering approach we defined microbial micro-habitats within the pelagic realm at Schulz Bank, which were mapped onto the seamount's topography, and related to various environmental parameters (such as suspended particulate matter (SPM), dissolved inorganic carbon (DIC), silicate (SiO4−), phosphate (PO43−), ammonia (NH4+), nitrate (NO32−), nitrite (NO2


2013 ◽  
Vol 93 (3) ◽  
pp. 305-318 ◽  
Author(s):  
Aria S. Hahn ◽  
Sylvie A. Quideau

Hahn, A. S. and Quideau, S. A. 2013. Shifts in soil microbial community biomass and resource utilization along a Canadian glacier chronosequence. Can. J. Soil Sci. 93: 305–318. We aimed to describe soil microbial community composition and functional diversity as well as determine the influence of Engelmann spruce (Picea engelmannii Parry) and yellow mountain avens (Dryas drummondii Rich.) on soil microbial community succession along a Canadian glacier chronosequence. Soil microbial composition and functional activity were assessed using phospholipid fatty acid (PLFA) analysis, substrate-induced respiration and enzyme activity analysis. To the best of our knowledge, this is the first study investigating peroxidase and phenol oxidase activities, indicators of fungal activity, along any glacial chronosequence. While no difference in soil microbial community composition along the chronosequence was detected from the PLFA analysis, both total microbial biomass and fungal activity increased with time since deglaciation. Yellow mountain avens, a plant known to support microbial nitrogen fixation in mid- and late successional stages, increased soil microbial biomass, although this effect took 40 yr after deglaciation to emerge. Additionally, significant correlations between microbial respiration of N-acetyl-glucosamine, protocatechuic acid, glucose and percent soil N were found along the chronosequence, indicating that the soil microbial community was influencing changes in the soil environment.


2021 ◽  
Vol 1 ◽  
Author(s):  
Min Wang ◽  
Qiuxiang Tian ◽  
Chang Liao ◽  
Rudong Zhao ◽  
Feng Liu

The input of dissolved organic carbon (DOC) into soil affects soil organic carbon mineralization and microbial community composition by changing carbon availability. However, up to now, there is little knowledge about the microbial groups that utilize the added DOC and how the incorporation process may vary over time. In this study, we added 13C-labeled litter-derived DOC (treatment) or pure water (control) to a forest soil from different layers to investigate the effects of DOC addition on soil microbial biomass and community composition in a 180-d laboratory incubation experiment. Soil microbial phospholipid fatty acid (PLFA) were measured to assess changes in the microbial community composition. The 13C incorporation into microbial biomass and PLFAs was analyzed to trace the microbial utilization of litter-derived DOC. Our results indicated that DOC addition increased the biomass of gram-negative bacteria, gram-positive bacteria, fungi, and actinomycetes, but the microbial community composition manifested a similar trend for both treatment and control soils at the end of incubation. Proportions of added DOC in different depths of soil microbial PLFAs had no significant difference. Moreover, 17:0 cy and 15:0 PLFAs which are described as the bacterial biomarkers had a greater amount of 13C incorporation than other PLFAs for the topsoil, which indicated that 13C-labeled litter-derived DOC was more easily assimilated by some specific bacterial community. Soil microbial biomass and the incorporation of 13C into PLFA reached its maximum around 30 days after DOC addition and then rapidly reduced to the level comparable to control. Overall, this study demonstrated that the incorporation of 13C-labeled litter-derived DOC into PLFA in different depth soil had no significant difference, and the incorporation of 13C by bacteria was higher than other microbial groups.


2020 ◽  
Vol 17 (13) ◽  
pp. 3471-3486 ◽  
Author(s):  
Kathrin Busch ◽  
Ulrike Hanz ◽  
Furu Mienis ◽  
Benjamin Mueller ◽  
Andre Franke ◽  
...  

Abstract. Seamounts represent ideal systems to study the influence and interdependency of environmental gradients at a single geographic location. These topographic features represent a prominent habitat for various forms of life, including microbiota and macrobiota, spanning benthic as well as pelagic organisms. While it is known that seamounts are globally abundant structures, it still remains unclear how and to which extent the complexity of the sea floor is intertwined with the local oceanographic mosaic, biogeochemistry, and microbiology of a seamount ecosystem. Along these lines, the present study aimed to explore whether and to what extent seamounts can have an imprint on the microbial community composition of seawater and of sessile benthic invertebrates, sponges. For our high-resolution sampling approach of microbial diversity (16S rRNA gene amplicon sequencing) along with measurements of inorganic nutrients and other biogeochemical parameters, we focused on the Schulz Bank seamount ecosystem, a sponge ground ecosystem which is located on the Arctic Mid-Ocean Ridge. Seawater samples were collected at two sampling depths (mid-water, MW, and near-bed water, BW) from a total of 19 sampling sites. With a clustering approach we defined microbial microhabitats within the pelagic realm at Schulz Bank, which were mapped onto the seamount's topography and related to various environmental parameters (such as suspended particulate matter, SPM; dissolved inorganic carbon, DIC; silicate, SiO4-; phosphate, PO43-; ammonia, NH4+; nitrate, NO32-; nitrite, NO2-; depth; and dissolved oxygen, O2). The results of our study reveal a “seamount effect” (sensu stricto) on the microbial mid-water pelagic community at least 200 m above the sea floor. Further, we observed a strong spatial heterogeneity in the pelagic microbial landscape across the seamount, with planktonic microbial communities reflecting oscillatory and circulatory water movements, as well as processes of bentho-pelagic coupling. Depth, NO32-, SiO4-, and O2 concentrations differed significantly between the determined pelagic microbial clusters close to the sea floor (BW), suggesting that these parameters were presumably linked to changes in microbial community structures. Secondly, we assessed the associated microbial community compositions of three sponge species along a depth gradient of the seamount. While sponge-associated microbial communities were found to be mainly species-specific, we also detected significant intra-specific differences between individuals, depending on the pelagic near-bed cluster they originated from. The variable microbial phyla (i.e. phyla which showed significant differences across varying depth, NO32-, SiO4-, O2 concentrations, and different from local seawater communities) were distinct for every sponge species when considering average abundances per species. Variable microbial phyla included representatives of both those taxa traditionally counted for the variable community fraction and taxa counted traditionally for the core community fraction. Microbial co-occurrence patterns for the three examined sponge species Geodia hentscheli, Lissodendoryx complicata, and Schaudinnia rosea were distinct from each other. Over all, this study shows that topographic structures such as the Schulz Bank seamount can have an imprint (seamount effect sensu lato) on both the microbial community composition of seawater and sessile benthic invertebrates such as sponges by an interplay between the geology, physical oceanography, biogeochemistry, and microbiology of seamounts.


Soil Research ◽  
2008 ◽  
Vol 46 (4) ◽  
pp. 390 ◽  
Author(s):  
Shinpei Yoshitake ◽  
Takayuki Nakatsubo

We used phospholipid fatty acid (PLFA) analysis to examine the relation of microbial biomass and community composition to vegetation zonation on a coastal sand dune. Soil samples were collected along 3 line transects established from the shoreline to the inland bush. Total PLFA content and PLFA composition of soils were used as indices of total microbial biomass and community composition, respectively. The microbial biomass was much higher in the inland Vitex rotundifolia zone than in the seaside plots. The microbial community composition also differed among the vegetation zones, with a higher contribution of fungal biomarkers in the inland plots. The microbial biomass increased significantly with increasing soil organic matter (SOM) content, but was not correlated with soil salinity. These results suggest that microbial biomass in the coastal sand dune was controlled primarily by the accumulation of SOM. The microbial community composition also changed with SOM content in the seaside plots, but SOM had little effect in the inland plots. These results suggest that the factors limiting the microbial community composition differed with location on the dune.


Sign in / Sign up

Export Citation Format

Share Document