Temporal variation of the population structure and genetic diversity of Farfantepenaeus notialis assessed by allozyme loci

2005 ◽  
Vol 14 (10) ◽  
pp. 2933-2942 ◽  
Author(s):  
AYMEE ROBAINAS BARCIA ◽  
GEORGINA ESPINOSA LOPEZ ◽  
DAMIR HERNANDEZ ◽  
ERIK GARCIA-MACHADO
2000 ◽  
Vol 78 (7) ◽  
pp. 941-956 ◽  
Author(s):  
Om P Rajora ◽  
Alex Mosseler ◽  
John E Major

Red spruce (Picea rubens Sarg.) has become increasingly rare across large portions of its range in eastern North America as a result of a general and widespread decline over the past century. Genetic diversity, population genetic structure, outcrossing rates in the filled seeds, and actual inbreeding levels were characterized in five small, isolated, remnant red spruce populations from the disjunct northwestern limits of its range in Ontario and five populations from the larger, more extensive Maritime populations of Nova Scotia and New Brunswick to determine genetic and reproductive status, to provide some benchmarks for monitoring genetic changes resulting from isolation and restricted population sizes, and to assist the development of restoration and conservation strategies. Thirty-seven allozyme loci coding for 15 enzymes were used for genetic diversity assessments, and six of the most polymorphic loci were used for mating system determination. On average, 29.1% (95% criterion) of the loci were polymorphic, the number of alleles per locus was 1.60, and the observed and expected heterozygosities were 0.097 and 0.100, respectively. The Ontario populations were comparable to or slightly less genetically variable than those from the Maritimes. Only 4.7% of the detected genetic variation was among stands; the remainder was among individuals within stands. The Maritime populations were genetically less differentiated from each other than those in Ontario. With the exception of three Maritime populations clustering tightly in one group, there was no clear separation of Ontario red spruce populations from Maritime red spruce populations based on genetic distance as well as canonical discriminant analyses. The average multilocus (tm) and single-locus (ts) population outcrossing rates were 0.595 and 0.558, respectively, indicating a comparatively high tolerance for inbreeding up to the filled seed stage of development in red spruce. The Ontario populations, on average, showed higher outcrossing rates (tm = 0.654, ts = 0.641) than the Maritime populations (tm = 0.535, ts = 0.475). Individual family outcrossing rates were similar to their respective population outcrossing rates and no significant differences were observed among families within populations for the multilocus estimates. When such high levels of inbreeding in filled seeds were combined with the proportions of empty (post-pollination-aborted) seeds, it appears that actual inbreeding levels may vary from 48 to 86%. The highest inbreeding levels occurred in the smallest, most isolated Ontario populations and in those populations most likely to have been affected by poorer pollination conditions. Allozyme variation indicates that in the short term, extant remnants of Ontario red spruce have maintained their genetic diversity and integrity. For artificial restoration of red spruce in Ontario, local seed sources could be used without undue concern over losses of genetic diversity. However, over the longer term, genetic drift and inbreeding may be expected to result in further losses of genetic diversity and (or) reproductive fitness if population sizes, numbers, and distribution continue to decline.Key words: Picea rubens, allozymes, gene conservation, restoration, genetic diversity, population structure, outcrossing rates, inbreeding.


2000 ◽  
Vol 78 (9) ◽  
pp. 1238-1243 ◽  
Author(s):  
Ricardo Morin ◽  
Jean Beaulieu ◽  
Marie Deslauriers ◽  
Gaëtan Daoust ◽  
Jean Bousquet

Butternut (Juglans cinerea L.) is a minor component of the temperate deciduous forest region of northeastern North America, but it is severely affected by the butternut canker (Sirococcus clavigignenti-juglandacearum Nair, Kostichka, and Kuntz) in the southern part of its natural range. Genetic diversity and population structure in as-yet unaffected or only slightly affected natural populations were evaluated at 12 isozyme loci. The genetic diversity estimates were low with values much below those estimated in other species of the same genus or in boreal tree species, with 25 and 13.9% polymorphic loci at the species and population levels, respectively; 1.3 and 2.3 alleles per locus and per polymorphic locus, respectively, at the species level; and an average observed heterozygosity of 0.028. Population differentiation was low, with the exception of one unique population. The implications for advanced conservation are discussed.Key words: butternut, isozymes, Sirococcus, canker, population structure.


1998 ◽  
Vol 76 (3) ◽  
pp. 500-508 ◽  
Author(s):  
Om P Rajora ◽  
Linda DeVerno ◽  
Alex Mosseler ◽  
David J Innes

The dramatic decline of eastern white pine (Pinus strobus L.) populations in Newfoundland over the past 100 years presents an opportunity to determine and monitor population bottleneck effects on genetic diversity in trees. To provide benchmarks and indicators for monitoring genetic changes due to recent and future bottleneck events and to assist development of conservation strategies, we assessed genetic diversity and structure of six small, isolated white pine populations from two regions at the limits of its geographical range in Newfoundland for comparison with three populations from its central range in Ontario for 20 allozyme loci coding for 12 enzymes. On average, 47.8% of the loci were polymorphic, the number of alleles per locus was 1.75, and the observed and expected heterozygosities were 0.215 and 0.195, respectively. Although most of the alleles were widespread, unique alleles were found in three of the nine populations examined. The Newfoundland populations were as genetically variable as those from Ontario. Generally, all populations exhibited slight excess of heterozygotes at most loci. Only 6.1% of the detected genetic variation was among populations, and the remainder among individuals within populations. The genetic distances among the populations within a province or region were as great as those among populations between the provinces or regions. Canonical discriminant functions and cluster analysis from genetic distances separated nine populations into the same four groups. Neither provincial nor regional or geographic gradient-related patterns of population variation and differentiation were apparent. It appears that 8000 years of postglacial geographic isolation and recent population decline have had little or no detectable effect on genetic diversity or differentiation of disjunct Newfoundland white pine populations from their ancestral mainland populations. Assuming their adaptability, the Ontario seed sources may be acceptable for white pine restoration in Newfoundland.Key words : Pinus strobus, allozymes, gene conservation, genetic diversity and population structure, genetic drift, population bottleneck.


1990 ◽  
Vol 38 (6) ◽  
pp. 559 ◽  
Author(s):  
GB Peters ◽  
JS Lonie ◽  
GF Moran

There are eight known populations of E. pulverulenta, which has a disjunct distribution in south-eastern Australia. Levels of genetic variation were studied in four populations of about 5000 plants in all. Of a total of 16 allozyme loci examined eight were polymorphic, but the level of polymorphism was generally low. Within populations there was a mean 1.42 alleles per locus. Both the total species and mean population genetic diversities were low for a tree species (0.10 and 0.07 respectively), while the between-population genetic diversity was high at 30%. These data are consistent with the effects expected of genetic drift. Population structure may thus have been critical in determining levels of genetic diversity throughout the species' range. Analysis of half-sib arrays in three populations showed that the mean outcrossing rate (t) was 70%, comparable to values from other Eucalyptus species. The mean level of inbreeding (Wright's F) was 0.19, although both F and t varied considerably between populations. Significant levels of pollen sterility have been reported in this species, and data presented here show that this trait extends through much of the species' range. Overall, these data suggest that neither its disjunct population structure nor its tendency to male sterility caused the species' detectable level of outcrossing to differ markedly from levels reported in other eucalypt species. However, it remains possible that pollen sterility may have had some effect in at least one population. Strategies for conservation of this rare species are also considered.


2001 ◽  
Vol 79 (4) ◽  
pp. 457-463 ◽  
Author(s):  
Man Kyu Huh

Genetic diversity and population structure of 22 Carex humilis var. nana Ohwi (Cyperaceae) populations in Korea were determined using genetic variation at 23 allozyme loci. This is a long-lived herbaceous species with a widespread distribution in eastern Asia. The 12 enzymes revealed 23 putative loci, of which 11 were polymorphic (47.8%). Genetic diversity at the varietal level and at the population level was 0.131 and 0.118, respectively. Total genetic diversity (HT = 0.274) and within population genetic diversity (HS = 0.256) were high, whereas the extent of the population divergence was relatively low (GST = 0.068). An indirect estimate of the number of migrants per generation (Nm = 3.42) indicated that gene flow was high among Korean populations. Wide geographic ranges, perennial herbaceous nature, and the persistence of multiple generations are associated with the high level of genetic variation. A distinct difference between Asian and North American Carex is shown in the proportion of genetic variation (GST) (p < 0.001). The mean GST of Asian Carex was estimated as 0.056; thus, only 5.6% of genetic variability was distributed among populations, whereas the mean GST of North American Carex was estimated as 19.5% (3.5 times higher). It is probable that the geographical distance between population pairs and presence or absence of glacial history may play roles in the substantial difference between both groups.Key words: Carex humilis var. nana, genetic diversity, population structure.


1983 ◽  
Vol 31 (2) ◽  
pp. 161 ◽  
Author(s):  
GF Moran ◽  
SD Hopper

There are 15 populations of E. caesia Benth. on granite rocks in south-westem Australia which include a total of about 2120 plants. The level of genetic variation at 18 allozyme loci in 13 populations was estimated. Seven loci were monomorphic for all plants assayed. At a majority of the 11 polymorphic loci the level of polymorphism was very low in most populations. Within populations the mean number of alleles per locus was 1.31 and the genetic diversity 6.8%. However, populations differed markedly in allelic frequencies at a number of loci. The genetic diversity within populations was remarkably low for a tree species but the level of population differentiation was the highest reported for any tree species. The data suggest that genetic drift may in part have been responsible for the low overall genetic diversity and the extensive population differentiation. The optimal strategies for conservation of the genetic resources of this valuable ornamental are considered in the light of the results of this study.


2020 ◽  
Vol 52 (6) ◽  
Author(s):  
Anpei Zhou ◽  
Dan Zong ◽  
Peihua Gan ◽  
Yao Zhang ◽  
Dan Li ◽  
...  

2011 ◽  
Vol 4 (2) ◽  
pp. 115-119 ◽  
Author(s):  
Ross D. MacCulloch ◽  
Ilya S. Darevsky ◽  
Robert W. Murphy ◽  
Jinzhong Fu

Genetic diversity at 35 allozyme loci was surveyed in Lacerta derjugini (3 populations) and L. praticola (2 populations). Indices of variability were consistent with those found in other Caucasian Lacerta. There was little genetic substructuring between two populations of L. praticola despite considerable geographic separation. Conversely, populations of L. derjugini in close proximity to one another exhibited considerable substructuring.


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