scholarly journals The right tools for the job: The case for spatial science tool‐building

2020 ◽  
Vol 24 (5) ◽  
pp. 1299-1314 ◽  
Author(s):  
Geoff Boeing
Keyword(s):  
2020 ◽  
Author(s):  
Geoff Boeing

This paper was presented as the 8th annual Transactions in GIS plenary address at the American Association of Geographers annual meeting in Washington, DC. The spatial sciences have recently seen growing calls for more accessible software and tools that better embody geographic science and theory. Urban spatial network science offers one clear opportunity: from multiple perspectives, tools to model and analyze nonplanar urban spatial networks have traditionally been inaccessible, atheoretical, or otherwise limiting. This paper reflects on this state of the field. Then it discusses the motivation, experience, and outcomes of developing OSMnx, a tool intended to help address this. Next it reviews this tool's use in the recent multidisciplinary spatial network science literature to highlight upstream and downstream benefits of open‐source software development. Tool-building is an essential but poorly incentivized component of academic geography and social science more broadly. To conduct better science, we need to build better tools. The paper concludes with paths forward, emphasizing open-source software and reusable computational data science beyond mere reproducibility and replicability.


Author(s):  
Marine Cusa ◽  
Katie St John Glew ◽  
Clive Trueman ◽  
Stefano Mariani ◽  
Leah Buckley ◽  
...  

AbstractDemand for seafood products is increasing worldwide, contributing to ever more complex supply chains and posing challenges to trace their origin and guarantee legal, well-managed, sustainable sources from confirmed locations. While DNA-based methods have proven to be reliable in verifying seafood authenticity at the species level, the verification of geographic origin remains inherently more complex. Both genetic and stable isotope analyses have been employed for determining point-of-origin with varying degrees of success, highlighting that their application can be effective when the right tool is selected for a given application. Developing an a priori prediction of their discrimination power for different applications can help avoid the financial cost of developing inappropriate reference datasets. Here, we reviewed the application of both techniques to seafood point-of-origin for 63 commercial finfish species certified by the Marine Stewardship Council, and showed that, even for those species where baseline data exist, real applications are scarce. To fill these gaps, we synthesised current knowledge on biological and biogeochemical mechanisms that underpin spatial variations in genetic and isotopic signatures. We describe which species’ biological and distribution traits are most helpful in predicting effectiveness of each tool. Building on this, we applied a mechanistic approach to predicting the potential for successful validation of origin to three case study fisheries, using combined genetic and isotopic methodologies to distinguish individuals from certified versus non-certified regions. Beyond ecolabelling applications, the framework we describe could be reproduced by governments and industries to select the most cost-effective techniques. Graphic abstract


Author(s):  
J. Anthony VanDuzer

SummaryRecently, there has been a proliferation of international agreements imposing minimum standards on states in respect of their treatment of foreign investors and allowing investors to initiate dispute settlement proceedings where a state violates these standards. Of greatest significance to Canada is Chapter 11 of the North American Free Trade Agreement, which provides both standards for state behaviour and the right to initiate binding arbitration. Since 1996, four cases have been brought under Chapter 11. This note describes the Chapter 11 process and suggests some of the issues that may arise as it is increasingly resorted to by investors.


2019 ◽  
Vol 42 ◽  
Author(s):  
Guido Gainotti

Abstract The target article carefully describes the memory system, centered on the temporal lobe that builds specific memory traces. It does not, however, mention the laterality effects that exist within this system. This commentary briefly surveys evidence showing that clear asymmetries exist within the temporal lobe structures subserving the core system and that the right temporal structures mainly underpin face familiarity feelings.


Author(s):  
J. Taft∅

It is well known that for reflections corresponding to large interplanar spacings (i.e., sin θ/λ small), the electron scattering amplitude, f, is sensitive to the ionicity and to the charge distribution around the atoms. We have used this in order to obtain information about the charge distribution in FeTi, which is a candidate for storage of hydrogen. Our goal is to study the changes in electron distribution in the presence of hydrogen, and also the ionicity of hydrogen in metals, but so far our study has been limited to pure FeTi. FeTi has the CsCl structure and thus Fe and Ti scatter with a phase difference of π into the 100-ref lections. Because Fe (Z = 26) is higher in the periodic system than Ti (Z = 22), an immediate “guess” would be that Fe has a larger scattering amplitude than Ti. However, relativistic Hartree-Fock calculations show that the opposite is the case for the 100-reflection. An explanation for this may be sought in the stronger localization of the d-electrons of the first row transition elements when moving to the right in the periodic table. The tabulated difference between fTi (100) and ffe (100) is small, however, and based on the values of the scattering amplitude for isolated atoms, the kinematical intensity of the 100-reflection is only 5.10-4 of the intensity of the 200-reflection.


Author(s):  
Russell L. Steere ◽  
Michael Moseley

A redesigned specimen holder and cap have made possible the freeze-etching of both fracture surfaces of a frozen fractured specimen. In principal, the procedure involves freezing a specimen between two specimen holders (as shown in A, Fig. 1, and the left side of Fig. 2). The aluminum specimen holders and brass cap are constructed so that the upper specimen holder can be forced loose, turned over, and pressed down firmly against the specimen stage to a position represented by B, Fig. 1, and the right side of Fig. 2.


Author(s):  
K.S. McCarty ◽  
N.R. Wallace ◽  
W. Litaker ◽  
S. Wells ◽  
G. Eisenbarth

The production of adrenocorticotropic hormone by non-pituitary carcinomas has been documented in several tumors, most frequently small cell carcinoma of the lung, islet cell carcinomas of the pancreas, thymomas and carcinoids. Electron microscopy of these tumors reveals typical membrane-limited "neurosecretory" granules. Confirmation of the granules as adrenocorticotropin (ACTH) requires the use of OsO4 as a primary fixative to give the characteristic cored granule appearance in conjunction with immunohistochemical demonstration of the hormone peptide. Because of the rarity of ectopic ACTH production by mammary carcinomas and the absence of appropriate ultrastructural studies in the two examples of such ectopic hormone production in the literature of which we are aware (1,2), we present biochemical and ultrastructural data from a carcinoma of the breast with apparent ACTH production.The patient had her primary tumor in the right breast in 1969. The tumor recurred as visceral and subcutaneous metastases in 1976 and again in 1977.


Author(s):  
Melinda L. Estes ◽  
Samuel M. Chou

Many muscle diseases show common pathological features although their etiology is different. In primary muscle diseases a characteristic finding is myofiber necrosis. The mechanism of myonecrosis is unknown. Polymyositis is a primary muscle disease characterized by acute and subacute degeneration as well as regeneration of muscle fibers coupled with an inflammatory infiltrate. We present a case of polymyositis with unusual ultrastructural features indicative of the basic pathogenetic process involved in myonecrosis.The patient is a 63-year-old white female with a one history of proximal limb weakness, weight loss and fatigue. Examination revealed mild proximal weakness and diminished deep tendon reflexes. Her creatine kinase was 1800 mU/ml (normal < 140 mU/ml) and electromyography was consistent with an inflammatory myopathy which was verified by light microscopy on biopsy muscle. Ultrastructural study of necrotizing myofiber, from the right vastus lateralis, showed: (1) degradation of the Z-lines with preservation of the adjacent Abands including M-lines and H-bands, (Fig. 1), (2) fracture of the sarcomeres at the I-bands with disappearance of the Z-lines, (Fig. 2), (3) fragmented sarcomeres without I-bands, engulfed by invading phagocytes, (Fig. 3, a & b ), and (4) mononuclear inflammatory cell infiltrate in the endomysium.


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