scholarly journals Effect of labeling density and time post labeling on quality of antibody-based super resolution microscopy images

2015 ◽  
Author(s):  
Amy M. Bittel ◽  
Isaac Saldivar ◽  
Nicholas Dolman ◽  
Andrew K. Nickerson ◽  
Li-Jung Lin ◽  
...  
2018 ◽  
Vol 5 (6) ◽  
pp. 1130-1136 ◽  
Author(s):  
Apostolos A. Karanastasis ◽  
Yongdeng Zhang ◽  
Gopal S. Kenath ◽  
Mark D. Lessard ◽  
Joerg Bewersdorf ◽  
...  

The majority of gels exhibit nanoscale spatial variations in crosslink density. We present the first 3D super-resolution microscopy images of dye tagged cross-link distributions in microgels and hydrogels. The morphology of nanoscale features never imaged previously in microgels, are revealed.


2018 ◽  
Author(s):  
Hongqiang Ma ◽  
Wei Jiang ◽  
Jianquan Xu ◽  
Yang Liu

ABSTRACTSuper-resolution localization microscopy allows visualization of biological structure at nanoscale resolution. However, the presence of heterogeneous background can degrade the nanoscale resolution by tens of nanometers and introduce significant image artifacts. Here we develop a new approach, referred to as extreme value based emitter recovery (EVER), to accurately recover the distorted fluorescent emitters from heterogeneous background. Through numerical simulation and biological experiments, we demonstrate that EVER significantly improves the accuracy and fidelity of the reconstructed super-resolution image for a wide variety of imaging characteristics. EVER requires no manual adjustment of parameters and is implemented as an easy-to-use ImageJ plugin that can immediately enhance the quality of super-resolution images. Our method paves the way for accurate nanoscale imaging of samples with heterogeneous background fluorescence, such as thicker tissue and cells.


2014 ◽  
Vol 106 (2) ◽  
pp. 25a
Author(s):  
Joerg Schnitzbauer ◽  
Xiaoyu Shi ◽  
Robert Kasper ◽  
Baohui Chen ◽  
Shijie Zhao ◽  
...  

2017 ◽  
Author(s):  
Keria Bermudez-Hernandez ◽  
Sarah Keegan ◽  
Donna R. Whelan ◽  
Dylan A. Reid ◽  
Jennifer Zagelbaum ◽  
...  

AbstractWe introduce the Interaction Factor (IF), a measure for quantifying the interaction of molecular clusters in super-resolution microscopy images. The IF is robust in the sense that it is independent of cluster density, and it only depends on the extent of the pair-wise interaction between different types of molecular clusters in the image. The IF for a single or a collection of images is estimated by first using stochastic modelling where the locations of clusters in the images are repeatedly randomized to estimate the distribution of the overlaps between the clusters in the absence of interaction (IF=0). Second, an analytical form of the relationship between IF and the overlap (which has the random overlap as its only parameter) is used to estimate the IF for the experimentally observed overlap. The advantage of IF compared to conventional methods to quantify interaction in microscopy images is that it is insensitive to changing cluster density and is an absolute measure of interaction, making the interpretation of experiments easier. We validate the IF method by using both simulated and experimental data and provide an ImageJ plugin for determining the IF of an image.


2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Haoran Wang ◽  
Rainer Heintzmann ◽  
Benedict Diederich

Abstract Since the development of the first light microscope over 400 years ago, the technology has continuously evolved and established itself as a powerful tool, especially in biology, diagnostics and point-of-care (PoC) applications. The miniaturization of mass-produced actuators and sensors enables the use of technically extremely complex functions in smartphones at a very low price. They can be used to implement modern microscopy methods for use in places where access to such techniques is often very limited. In this review, we show how easy it is to integrate a smartphone into the everyday microscopy-imaging routines of biology research. Such devices have also been used to identify diseases directly at the patient. Furthermore, we demonstrate how constantly increasing computing power in combination with the steadily improving imaging quality of cameras of handheld devices enables the realization of new biomedical imaging methods, which together with commercially available and 3D-printed components make current research available to a broad mass. Examples are smartphone-based super-resolution microscopy (SRM) or task-specific single-board computer-based devices, which can analyze plankton in sea water.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Hongqiang Ma ◽  
Wei Jiang ◽  
Jianquan Xu ◽  
Yang Liu

AbstractSuper-resolution localization microscopy allows visualization of biological structure at nanoscale resolution. However, the presence of heterogeneous background can degrade the nanoscale resolution by tens of nanometers and introduce significant image artifacts. Here we investigate and validate an efficient approach, referred to as extreme value-based emitter recovery (EVER), to accurately recover the distorted fluorescent emitters from heterogeneous background. Through numerical simulation and biological experiments, we validated the accuracy of EVER in improving the fidelity of the reconstructed super-resolution image for a wide variety of imaging characteristics. EVER requires no manual adjustment of parameters and has been implemented as an easy-to-use ImageJ plugin that can immediately enhance the quality of reconstructed super-resolution images. This method is validated as an efficient way for robust nanoscale imaging of samples with heterogeneous background fluorescence, such as thicker tissue and cells.


2012 ◽  
Author(s):  
Viet Anh Ngo ◽  
Yan Nei Law ◽  
Srivats Hariharan ◽  
Hwee Kuan Lee ◽  
Sohail Ahmed

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