scholarly journals Large-scale diversification without genetic isolation in nematode symbionts of figs

2016 ◽  
Vol 2 (1) ◽  
pp. e1501031 ◽  
Author(s):  
Vladislav Susoy ◽  
Matthias Herrmann ◽  
Natsumi Kanzaki ◽  
Meike Kruger ◽  
Chau N. Nguyen ◽  
...  
Keyword(s):  
Genetic Divergence ◽  
Large Scale ◽  
Developmental Plasticity ◽  
Field Experiments ◽  
Single Species ◽  
Ecological Niches ◽  
Genetic Isolation ◽  
Remarkable Case ◽  
Alternative Phenotypes ◽  
Single Genotype

Diversification is commonly understood to be the divergence of phenotypes accompanying that of lineages. In contrast, alternative phenotypes arising from a single genotype are almost exclusively limited to dimorphism in nature. We report a remarkable case of macroevolutionary-scale diversification without genetic divergence. Upon colonizing the island-like microecosystem of individual figs, symbiotic nematodes of the genusPristionchusaccumulated a polyphenism with up to five discrete adult morphotypes per species. By integrating laboratory and field experiments with extensive genotyping of individuals, including the analysis of 49 genomes from a single species, we show that rapid filling of potential ecological niches is possible without diversifying selection on genotypes. This uncoupling of morphological diversification and speciation in fig-associated nematodes has resulted from a remarkable expansion of discontinuous developmental plasticity.

Relationship between total plasma homocysteine and the risk of aneurysms – a meta-analysis

VASA ◽  
2020 ◽  
pp. 1-6
Author(s):  
Hanji Zhang ◽  
Dexin Yin ◽  
Yue Zhao ◽  
Yezhou Li ◽  
Dejiang Yao ◽  
...  
Keyword(s):  
Large Scale ◽  
Meta Analysis ◽  
Single Species ◽  
Total Plasma ◽  
Control Groups ◽  
Randomized Controlled ◽  
Randomized Controlled Studies ◽  
The Difference ◽  
The Relationship ◽  
Healthy Participants

Summary: Our meta-analysis focused on the relationship between homocysteine (Hcy) level and the incidence of aneurysms and looked at the relationship between smoking, hypertension and aneurysms. A systematic literature search of Pubmed, Web of Science, and Embase databases (up to March 31, 2020) resulted in the identification of 19 studies, including 2,629 aneurysm patients and 6,497 healthy participants. Combined analysis of the included studies showed that number of smoking, hypertension and hyperhomocysteinemia (HHcy) in aneurysm patients was higher than that in the control groups, and the total plasma Hcy level in aneurysm patients was also higher. These findings suggest that smoking, hypertension and HHcy may be risk factors for the development and progression of aneurysms. Although the heterogeneity of meta-analysis was significant, it was found that the heterogeneity might come from the difference between race and disease species through subgroup analysis. Large-scale randomized controlled studies of single species and single disease species are needed in the future to supplement the accuracy of the results.

scholarly journals Thermal reaction norms of key metabolic enzymes reflect divergent physiological and behavioral adaptations of closely related amphipod species

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Lena Jakob ◽  
Kseniya P. Vereshchagina ◽  
Anette Tillmann ◽  
Lorena Rivarola-Duarte ◽  
Denis V. Axenov-Gribanov ◽  
...  
Keyword(s):  
Lactate Dehydrogenase ◽  
Lake Baikal ◽  
Enzyme Activities ◽  
Large Scale ◽  
Metabolic Enzymes ◽  
Thermal Reaction ◽  
Reaction Norms ◽  
Ecological Niches ◽  
Amphipod Species ◽  
Thermal Plasticity

AbstractLake Baikal is inhabited by more than 300 endemic amphipod species, which are narrowly adapted to certain thermal niches due to the high interspecific competition. In contrast, the surrounding freshwater fauna is commonly represented by species with large-scale distribution and high phenotypic thermal plasticity. Here, we investigated the thermal plasticity of the energy metabolism in two closely-related endemic amphipod species from Lake Baikal (Eulimnogammarus verrucosus; stenothermal and Eulimnogammarus cyaneus; eurythermal) and the ubiquitous Holarctic amphipod Gammarus lacustris (eurythermal) by exposure to a summer warming scenario (6–23.6 °C; 0.8 °C d−1). In concert with routine metabolic rates, activities of key metabolic enzymes increased strongly with temperature up to 15 °C in E. verrucosus, whereupon they leveled off (except for lactate dehydrogenase). In contrast, exponential increases were seen in E. cyaneus and G. lacustris throughout the thermal trial (Q10-values: 1.6–3.7). Cytochrome-c-oxidase, lactate dehydrogenase, and 3-hydroxyacyl-CoA dehydrogenase activities were found to be higher in G. lacustris than in E. cyaneus, especially at the highest experimental temperature (23.6 °C). Decreasing gene expression levels revealed some thermal compensation in E. cyaneus but not in G. lacustris. In all species, shifts in enzyme activities favored glycolytic energy generation in the warmth. The congruent temperature-dependencies of enzyme activities and routine metabolism in E. verrucosus indicate a strong feedback-regulation of enzymatic activities by whole organism responses. The species-specific thermal reaction norms reflect the different ecological niches, including the spatial distribution, distinct thermal behavior such as temperature-dependent migration, movement activity, and mating season.

scholarly journals Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant

BMC Biology ◽  
2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Elise J. Gay ◽  
Jessica L. Soyer ◽  
Nicolas Lapalu ◽  
Juliette Linglin ◽  
Isabelle Fudal ◽  
...  
Keyword(s):  
Host Plant ◽  
Large Scale ◽  
Field Experiments ◽  
Plant Residues ◽  
Plant Infection ◽  
Effector Genes ◽  
Controlled Conditions ◽  
Niche Adaptation ◽  
Depth Analysis ◽  
Fungal Genes

Abstract Background The fungus Leptosphaeria maculans has an exceptionally long and complex relationship with its host plant, Brassica napus, during which it switches between different lifestyles, including asymptomatic, biotrophic, necrotrophic, and saprotrophic stages. The fungus is also exemplary of “two-speed” genome organisms in the genome of which gene-rich and repeat-rich regions alternate. Except for a few stages of plant infection under controlled conditions, nothing is known about the genes mobilized by the fungus throughout its life cycle, which may last several years in the field. Results We performed RNA-seq on samples corresponding to all stages of the interaction of L. maculans with its host plant, either alive or dead (stem residues after harvest) in controlled conditions or in field experiments under natural inoculum pressure, over periods of time ranging from a few days to months or years. A total of 102 biological samples corresponding to 37 sets of conditions were analyzed. We show here that about 9% of the genes of this fungus are highly expressed during its interactions with its host plant. These genes are distributed into eight well-defined expression clusters, corresponding to specific infection lifestyles or to tissue-specific genes. All expression clusters are enriched in effector genes, and one cluster is specific to the saprophytic lifestyle on plant residues. One cluster, including genes known to be involved in the first phase of asymptomatic fungal growth in leaves, is re-used at each asymptomatic growth stage, regardless of the type of organ infected. The expression of the genes of this cluster is repeatedly turned on and off during infection. Whatever their expression profile, the genes of these clusters are enriched in heterochromatin regions associated with H3K9me3 or H3K27me3 repressive marks. These findings provide support for the hypothesis that part of the fungal genes involved in niche adaptation is located in heterochromatic regions of the genome, conferring an extreme plasticity of expression. Conclusion This work opens up new avenues for plant disease control, by identifying stage-specific effectors that could be used as targets for the identification of novel durable disease resistance genes, or for the in-depth analysis of chromatin remodeling during plant infection, which could be manipulated to interfere with the global expression of effector genes at crucial stages of plant infection.

Development and Testing of an Unmanned Aerial Vehicle for Large Scale Particle Image Velocimetry

2014 ◽  
Author(s):  
Christopher Pagano ◽  
Flavia Tauro ◽  
Salvatore Grimaldi ◽  
Maurizio Porfiri
Keyword(s):  
Particle Image Velocimetry ◽  
Large Scale ◽  
Field Experiments ◽  
Particle Image ◽  
Low Cost ◽  
Surface Flow ◽  
Natural Environments ◽  
Natural Stream ◽  
Image Velocimetry ◽  
Scale Particle

Large scale particle image velocimetry (LSPIV) is a nonintrusive environmental monitoring methodology that allows for continuous characterization of surface flows in natural catchments. Despite its promise, the implementation of LSPIV in natural environments is limited to areas accessible to human operators. In this work, we propose a novel experimental configuration that allows for unsupervised LSPIV over large water bodies. Specifically, we design, develop, and characterize a lightweight, low cost, and stable quadricopter hosting a digital acquisition system. An active gimbal maintains the camera lens orthogonal to the water surface, thus preventing severe image distortions. Field experiments are performed to characterize the vehicle and assess the feasibility of the approach. We demonstrate that the quadricopter can hover above an area of 1×1m2 for 4–5 minutes with a payload of 500g. Further, LSPIV measurements on a natural stream confirm that the methodology can be reliably used for surface flow studies.

scholarly journals Genome size correlates with reproductive fitness in seed beetles

2015 ◽  
Vol 282 (1815) ◽  
pp. 20151421 ◽  
Author(s):  
Göran Arnqvist ◽  
Ahmed Sayadi ◽  
Elina Immonen ◽  
Cosima Hotzy ◽  
Daniel Rankin ◽  
...  
Keyword(s):  
Life History ◽  
Natural Selection ◽  
Genome Size ◽  
Evolutionary Biology ◽  
Large Scale ◽  
Life History Traits ◽  
Single Species ◽  
Reproductive Fitness ◽  
Correlated Evolution ◽  
Seed Beetles

The ultimate cause of genome size (GS) evolution in eukaryotes remains a major and unresolved puzzle in evolutionary biology. Large-scale comparative studies have failed to find consistent correlations between GS and organismal properties, resulting in the ‘ C -value paradox’. Current hypotheses for the evolution of GS are based either on the balance between mutational events and drift or on natural selection acting upon standing genetic variation in GS. It is, however, currently very difficult to evaluate the role of selection because within-species studies that relate variation in life-history traits to variation in GS are very rare. Here, we report phylogenetic comparative analyses of GS evolution in seed beetles at two distinct taxonomic scales, which combines replicated estimation of GS with experimental assays of life-history traits and reproductive fitness. GS showed rapid and bidirectional evolution across species, but did not show correlated evolution with any of several indices of the relative importance of genetic drift. Within a single species, GS varied by 4–5% across populations and showed positive correlated evolution with independent estimates of male and female reproductive fitness. Collectively, the phylogenetic pattern of GS diversification across and within species in conjunction with the pattern of correlated evolution between GS and fitness provide novel support for the tenet that natural selection plays a key role in shaping GS evolution.

scholarly journals Reduced Dosage of Methyl Bromide for Controlling Verticillium Wilt of Potato in Experimental and Commercial Plots

Plant Disease ◽  
1997 ◽  
Vol 81 (5) ◽  
pp. 469-474 ◽  
Author(s):  
A. Gamliel ◽  
A. Grinstein ◽  
Y. Peretz ◽  
L. Klein ◽  
A. Nachmias ◽  
...  
Keyword(s):  
Verticillium Wilt ◽  
Methyl Bromide ◽  
Large Scale ◽  
Field Experiments ◽  
Tuber Yield ◽  
Total Yield ◽  
Effective Control ◽  
Large Scale Field ◽  
Commercial Applications

The use of gas-impermeable films to reduce the dosage of methyl bromide (MB) required to control Verticillium wilt in potatoes was examined in field experiments, conducted in soils naturally infested with Verticillium dahliae. The incidence and severity of Verticillium wilt were significantly reduced (by 74 to 94%) by fumigation with MB at 50 g/m2 under standard low density polyethylene (LDPE) or at 25 g/m2 under gas-impermeable films. Fumigation at 25 g/m2 under LDPE was less effective. Disease severity was inversely correlated (r2 = 0.89 to 0.91) with chlorophyll content in the leaves. Fumigation also reduced (by 89 to 100%) stem colonization by the pathogen. Potato yield in the fumigated plots was significantly higher (26 to 69%), than in their nonfumigated counterparts, and was inversely correlated with disease index (r2 = 0.69 to 0.9). The percentage of high-value tubers (above 45 g) was 52 to 56% of total yield in the fumigated plots as compared with 32 to 40% in the nonfumigated controls. Thus, fumigation also improved the commercial quality of tuber yield. Effective control of V. dahliae and yield increases following MB fumigation at the recommended dosage or at a reduced dosage with gas-impermeable films was also observed in a consecutive crop. These results were verified in a large-scale field experiment using commercial applications, further demonstrating the feasibility of reducing MB dosages under farm conditions, without reducing its effectiveness in terms of disease control and yield improvement.

A Synthesis of Knowns, Unknowns, and Policy Recommendations from the Sea Lamprey International Symposium

1980 ◽  
Vol 37 (11) ◽  
pp. 2202-2208 ◽  
Author(s):  
Carl J. Walters ◽  
George Spangler ◽  
W. J. Christie ◽  
Patrick J. Manion ◽  
James F. Kitchell
Keyword(s):  
International Symposium ◽  
Large Scale ◽  
Fishery Management ◽  
Field Experiments ◽  
Lake Trout ◽  
Sea Lamprey ◽  
Future Research ◽  
Fish Stock ◽  
Total Production ◽  
Pilot Studies

The Sea Lamprey International Symposium (SLIS) has provided a broad spectrum of facts and speculations for consideration in future research and management programs. Many aspects of the laboratory biology and field life history of the sea lamprey (Petromyzon marinus) are now well understood. There is little question that it can now be controlled by chemical larvicides, and perhaps in the future by more efficient integrated control programs. There is correlative evidence (wounds, scars, catch curves) that lamprey caused major mortalities in some fish species, and that control in conjunction with stocking has lead to remarkable recoveries of salmonid stocks in the Great Lakes. However, there are great gaps in understanding about just what the lamprey does under field conditions, and it is not yet possible to reject several hypotheses that assign lamprey a minimum or transient role in fish stock changes. Further studies on details of lamprey biology are, in themselves, unlikely to fill the gaps; one alternative is to conduct a large-scale field experiment involving cessation of lamprey control while holding other factors (fishing, stocking) as steady as possible. If it is decided to proceed with management on the assumption that lamprey are important, without the major field experiments to confirm it, then at least the following steps should be taken: (1) the chemical treatment program should be reviewed in detail, with a view to finding treatment schedules that will minimize frequency and dose rates for lampricide applications; (2) pilot studies on alternative control schemes (sterile male, attractants, barriers) should only be funded if they are statistically well designed (several replicate and control streams), and involve quantitative monitoring of lamprey spawning success and subsequent total production of transforming larvae; (3) the lake trout (Salvelinus namaycush) stocking program should be maintained at its present level, and should involve diverse genotypes rather than a few hatchery strains; (4) growth in the sport fisheries for lake trout should be curtailed, and commercial fisheries should not yet be permitted; (5) a multispecies harvesting policy should be designed that takes into account the buffering effect of each species on lamprey mortality suffered by others (i.e. should some species not be harvested at all, and viewed instead as buffers for more valuable species?); and (6) a program should be developed for restoring, by culture if necessary, native forage species in case the introduced smelt and alewife should collapse under pressure from fishing and prédation by the growing salmonid community.Key words: sea lamprey, proposed research, fishery management, mathematical models, population dynamics

Effects of irrigation regimes on powdery scab disease and yield of potatoes

1986 ◽  
Vol 26 (6) ◽  
pp. 745 ◽  
Author(s):  
PA Taylor ◽  
SP Flett ◽  
RFde Boer ◽  
D Marshall
Keyword(s):  
Large Scale ◽  
Field Experiments ◽  
Field Trials ◽  
Powdery Scab ◽  
Infested Soil ◽  
Spongospora Subterranea ◽  
Potato Tubers ◽  
Potato Plants ◽  
Tuber Set ◽  
Large Scale Field

The period of susceptibility of potato tubers to powdery scab (Spongospora subterranea) was studied by inoculating potato plants with spores, or by watering plants in infested soil, at different stages of plant development in greenhouse conditions. Maximum susceptibility began about 1 week before the stage when 50% of stolons had swollen to at least 5-mm diameter (tuber set), and ended 3-4 weeks later. With holding irrigation water during this period reduced the severity of powdery scab by 65-75% in field experiments in 1981-82 and 1982-83, but had no apparent effect on disease severity in 3 out of 6 large-scale field trials during 1984-85.

scholarly journals Hydraulic characterization of aquifers by thermal response testing: Validation by large-scale tank and field experiments

2014 ◽  
Vol 50 (1) ◽  
pp. 71-85 ◽  
Author(s):  
Valentin Wagner ◽  
Peter Bayer ◽  
Gerhard Bisch ◽  
Markus Kübert ◽  
Philipp Blum
Keyword(s):  
Large Scale ◽  
Field Experiments ◽  
Thermal Response ◽  
Response Testing
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