Estimating Bacterial Growth Parameters by Means of Detection Times

1999 ◽  
Vol 65 (2) ◽  
pp. 732-736 ◽  
Author(s):  
József Baranyi ◽  
Carmen Pin
Keyword(s):  
Growth Rate ◽  
Specific Growth Rate ◽  
Bacterial Growth ◽  
Specific Growth ◽  
Growth Parameters ◽  
Physiological State ◽  
Cell Number ◽  
Maximum Specific Growth Rate ◽  
Specific Rate ◽  
The Individual

ABSTRACT We developed a new numerical method to estimate bacterial growth parameters by means of detection times generated by different initial counts. The observed detection times are subjected to a transformation involving the (unknown) maximum specific growth rate and the (known) ratios between the different inoculum sizes and the constant detectable level of counts. We present an analysis of variance (ANOVA) protocol based on a theoretical result according to which, if the specific rate used for the transformation is correct, the transformed values are scattered around the same mean irrespective of the original inoculum sizes. That mean, termed the physiological state of the inoculum,α̂, and the maximum specific growth rate, μ, can be estimated by minimizing the variance ratio of the ANOVA procedure. The lag time of the population can be calculated as λ = −ln α̂/μ; i.e. the lag is inversely proportional to the maximum specific growth rate and depends on the initial physiological state of the population. The more accurately the cell number at the detection level is known, the better the estimate for the variance of the lag times of the individual cells.

scholarly journals THE IMPACT OF PASSAGE THROUGH THE INTESTINE OF THE EARTHWORM APORRECTODEA CALIGINOSA ON THE BACTERIAL COMMUNITY

2018 ◽  
pp. 57-73 ◽  
Author(s):  
O. A. Frolov ◽  
A. V. Yakushev
Keyword(s):  
Growth Rate ◽  
Bacterial Community ◽  
Specific Growth Rate ◽  
Bacterial Communities ◽  
Specific Growth ◽  
Physiological State ◽  
Maximum Specific Growth Rate ◽  
Aporrectodea Caliginosa ◽  
Nutrient Media ◽  
Rank Distributions

Ecophysiological features of the transit (passed through the intestinal lacune) bacterial hydrolytic complex Aporrectodea caliginosa were studied: a comparison of biodiversity was made in the soil and coprolites, the prevailing ecological strategy and physiological states among its members. The study was conducted by a complex structural and functional method based on the succession kinetic analysis of initiated hydrolytic bacterial communities that occur after the inoculation of a set of selective liquid nutrient media with a suspension of the test samples. In addition to hydrolytic microorganisms, non-hydrolytic bacterial satellites (oligotrophs and copyotropes) are included in initiated communities. The growth of initiated bacterial communities on eight media with biopolymers (chitin, cellulose, pectin, starch, xylan, dextran 500, tween 20, casein) was measured by optical density. It was described by two kinetic parameters used to describe the pure cultures of microorganisms: the maximum specific growth rate and the initial physiological state. The biodiversity of the initiated communities was de-termined according to the planting from liquid nutrient media with polymers on the agar medium. Rank distributions of the studied indicators were abnormal, therefore, median and nonparametric dispersion analyzes were used, as well as a direct analysis of rank distributions. The bacterial community from coprolites acquires greater sustainability - the species composition becomes more leveled (the Berger-Parker index, showing the degree of dominance of the most abundant species, decreases after the passage) and diverse (the Shannon index becomes higher after passage). The hydrolytic bacterial complex is activated at passage, as the median value of the initial physiological state of the initiated communities increases. In the bacterial block, the proportion of fast-growing bacteria of r-strategists increases (on liquid media with polymers, the share of initiated hydrolytic associations increases with large values of the maximum specific growth rate).

E-beam irradiation affects the maximum specific growth rate ofBacillus cereus

2012 ◽  
Vol 48 (2) ◽  
pp. 382-386 ◽  
Author(s):  
Juan Aguirre ◽  
Mª Rosa Rodríguez ◽  
Rodrigo González ◽  
Gonzalo García de Fernando
Keyword(s):  
Growth Rate ◽  
Specific Growth Rate ◽  
Specific Growth ◽  
Maximum Specific Growth Rate ◽  
Beam Irradiation ◽  
Ofbacillus Cereus

Maximum specific growth rate of anammox bacteria revisited

2017 ◽  
Vol 116 ◽  
pp. 296-303 ◽  
Author(s):  
Lei Zhang ◽  
Yuko Narita ◽  
Lin Gao ◽  
Muhammad Ali ◽  
Mamoru Oshiki ◽  
...  
Keyword(s):  
Growth Rate ◽  
Specific Growth Rate ◽  
Specific Growth ◽  
Maximum Specific Growth Rate ◽  
Anammox Bacteria

Evolution of Escherichia coli During Growth in a Constant Environment

Genetics ◽  
1987 ◽  
Vol 116 (3) ◽  
pp. 349-358
Author(s):  
Robert B Helling ◽  
Christopher N Vargas ◽  
Julian Adams
Keyword(s):  
Escherichia Coli ◽  
Growth Rate ◽  
Specific Growth Rate ◽  
Continuous Culture ◽  
Specific Growth ◽  
Maximum Specific Growth Rate ◽  
Constant Environment ◽  
Single Clone ◽  
Mixed Populations

ABSTRACT Populations of Escherichia coli, initiated with a single clone and maintained for long periods in glucose-limited continuous culture, developed extensive polymorphisms. In one population, examined after 765 generations, two majority and two minority types were identified. Stable mixed populations were reestablished from the isolated strains. Factors involved in the development of this polymorphism included differences in the maximum specific growth rate and in the transport of glucose, and excretion of metabolites by some clones which were utilized by minority clones.

scholarly journals Anaplerotic reactions active during growth of Saccharomyces cerevisiae on glycerol

2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Joeline Xiberras ◽  
Mathias Klein ◽  
Celina Prosch ◽  
Zahabiya Malubhoy ◽  
Elke Nevoigt
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Growth Rate ◽  
Specific Growth Rate ◽  
Pyruvate Carboxylase ◽  
Reference Strain ◽  
Specific Growth ◽  
Glyoxylate Cycle ◽  
Maximum Specific Growth Rate ◽  
The Glyoxylate Cycle ◽  
Anaplerotic Reactions

ABSTRACT Anaplerotic reactions replenish TCA cycle intermediates during growth. In Saccharomyces cerevisiae, pyruvate carboxylase and the glyoxylate cycle have been experimentally identified to be the main anaplerotic routes during growth on glucose (C6) and ethanol (C2), respectively. The current study investigates the importance of the two isoenzymes of pyruvate carboxylase (PYC1 and PYC2) and one of the key enzymes of the glyoxylate cycle (ICL1) for growth on glycerol (C3) as a sole carbon source. As the wild-type strains of the CEN.PK family are unable to grow in pure synthetic glycerol medium, a reverse engineered derivative showing a maximum specific growth rate of 0.14 h−1 was used as the reference strain. While the deletion of PYC1 reduced the maximum specific growth rate by about 38%, the deletion of PYC2 had no significant impact, neither in the reference strain nor in the pyc1Δ mutant. The deletion of ICL1 only marginally reduced growth of the reference strain but further decreased the growth rate of the pyc1 deletion strain by 20%. Interestingly, the triple deletion (pyc1Δ pyc2Δ icl1Δ) did not show any growth. Therefore, both the pyruvate carboxylase and the glyoxylate cycle are involved in anaplerosis during growth on glycerol.

The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei

Microbiology ◽  
2005 ◽  
Vol 151 (1) ◽  
pp. 135-143 ◽  
Author(s):  
Tiina M. Pakula ◽  
Katri Salonen ◽  
Jaana Uusitalo ◽  
Merja Penttilä
Keyword(s):  
Growth Rate ◽  
Protein Synthesis ◽  
Specific Growth Rate ◽  
Trichoderma Reesei ◽  
Growth Rates ◽  
Protein Production ◽  
Specific Growth ◽  
Synthesis Rate ◽  
Specific Rate ◽  
Specific Growth Rates

Trichoderma reesei was cultivated in chemostat cultures on lactose-containing medium. The cultures were characterized for growth, consumption of the carbon source and protein production. Secreted proteins were produced most efficiently at low specific growth rates, 0·022–0·033 h−1, the highest specific rate of total protein production being 4·1 mg g−1 h−1 at the specific growth rate 0·031 h−1. At low specific growth rates, up to 29 % of the proteins produced were extracellular, in comparison to only 6–8 % at high specific growth rates, 0·045–0·066 h−1. To analyse protein synthesis and secretion in more detail, metabolic labelling of proteins was applied to analyse production of the major secreted protein, cellobiohydrolase I (CBHI, Cel7A). Intracellular and extracellular labelled CBHI was quantified and analysed for pI isoforms in two-dimensional gels, and the synthesis and secretion rates of the molecule were determined. Both the specific rates of CBHI synthesis and secretion were highest at low specific growth rates, the optimum being at 0·031 h−1. However, at low specific growth rates the secretion rate/synthesis rate ratio was significantly lower than that at high specific growth rates, indicating that at low growth rates the capacity of cells to transport the protein becomes limiting. In accordance with the high level of protein production and limitation in the secretory capacity, the transcript levels of the unfolded protein response (UPR) target genes pdi1 and bip1 as well as the gene encoding the UPR transcription factor hac1 were induced.

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