scholarly journals Distinct Signaling Pathways from the Circadian Clock Participate in Regulation of Rhythmic Conidiospore Development in Neurospora crassa

2002 ◽  
Vol 1 (2) ◽  
pp. 273-280 ◽  
Author(s):  
Alejandro Correa ◽  
Deborah Bell-Pedersen

ABSTRACT Several different environmental signals can induce asexual spore development (conidiation) and expression of developmentally regulated genes in Neurospora crassa. However, under constant conditions, where no environmental cues for conidiation are present, the endogenous circadian clock in N. crassa promotes daily rhythms in expression of known developmental genes and of conidiation. We anticipated that the same pathway of gene regulation would be followed during clock-controlled conidiation and environmental induction of conidiation and that the circadian clock would need only to control the initial developmental switch. Previous experiments showed that high-level developmental induction of the clock-controlled genes eas (ccg-2) and ccg-1 requires the developmental regulatory proteins FL and ACON-2, respectively, and normal developmental induction of fl mRNA expression requires ACON-2. We demonstrate that the circadian clock regulates rhythmic fl gene expression and that fl rhythmicity requires ACON-2. However, we find that clock regulation of eas (ccg-2) is normal in an fl mutant strain and ccg-1 expression is rhythmic in an acon-2 mutant strain. Together, these data point to the endogenous clock and the environment following separate pathways to regulate conidiation-specific gene expression.

2003 ◽  
Vol 2 (2) ◽  
pp. 231-237 ◽  
Author(s):  
Andrew V. Greene ◽  
Nancy Keller ◽  
Hubertus Haas ◽  
Deborah Bell-Pedersen

ABSTRACT We have established the presence of a circadian clock in Aspergillus flavus and Aspergillus nidulans by morphological and molecular assays, respectively. In A. flavus, the clock regulates an easily assayable rhythm in the development of sclerotia, which are large survival structures produced by many fungi. This developmental rhythm exhibits all of the principal clock properties. The rhythm is maintained in constant environmental conditions with a period of 33 h at 30°C, it can be entrained by environmental signals, and it is temperature compensated. This endogenous 33-h period is one of the longest natural circadian rhythms reported for any organism, and this likely contributes to some unique responses of the clock to environmental signals. In A. nidulans, no obvious rhythms in development are apparent. However, a free running and entrainable rhythm in the accumulation of gpdA mRNA (encoding glyceraldehyde-3-phosphate dehydrogenase) is observed, suggesting the presence of a circadian clock in this species. We are unable to identify an Aspergillus ortholog of frequency, a gene required for normal circadian rhythmicity in Neurospora crassa. Together, our data indicate the existence of an Aspergillus circadian clock, which has properties that differ from that of the well-described clock of N. crassa.


1992 ◽  
Vol 66 (1) ◽  
pp. 62-67 ◽  
Author(s):  
S. Sun ◽  
T. Matsuura ◽  
K. Sugane

ABSTRACTA previously reported cDNA clone encoding 34 kDa antigenic polypeptide of Dirofilaria immitis (λ cD34) was studied to elucidate the mechanism of stage-specific gene expression. The 34 kDa polypeptide was a larva-specific antigen and the mRNA was detectable in microfilariae but not in adult worms and eggs. The λ cD34 gene was not sex linked and was contained in the genome of D. immitis at each stage. The stage-specific expression of the developmentally regulated gene in D. immitis may be controlled primarily at the mRNA level.


Genetics ◽  
2001 ◽  
Vol 159 (2) ◽  
pp. 537-543
Author(s):  
Louis W Morgan ◽  
Jerry F Feldman

Abstract We identified a series of epistatic and synergistic interactions among the circadian clock mutations of Neurospora crassa that indicate possible physical interactions among the various clock components encoded by these genes. The period-6 (prd-6) mutation, a short-period temperature-sensitive clock mutation, is epistatic to both the prd-2 and prd-3 mutations. The prd-2 and prd-3 long-period mutations show a synergistic interaction in that the period length of the double mutant strain is considerably longer than predicted. In addition, the prd-2 prd-3 double mutant strain also exhibits overcompensation to changes in ambient temperature, suggesting a role in the temperature compensation machinery of the clock. The prd-2, prd-3, and prd-6 mutations also show significant interactions with the frq7 long-period mutation. These results suggest that the gene products of prd-2, prd-3, and prd-6 play an important role in both the timing and temperature compensation mechanisms of the circadian clock and may interact with the FRQ protein.


2021 ◽  
Vol 12 ◽  
Author(s):  
Yuechong Yue ◽  
Lan Wang ◽  
Rangcai Yu ◽  
Feng Chen ◽  
Jieling He ◽  
...  

Methyl benzoate is a constituent of floral scent profile of many flowering plants. However, its biosynthesis, particularly in monocots, is scarcely reported. The monocot Hedychium coronarium is a popular ornamental plant in tropical and subtropical regions partly for its intense and inviting fragrance, which is mainly determined by methyl benzoate and monoterpenes. Interestingly, several related Hedychium species lack floral scent. Here, we studied the molecular mechanism of methyl benzoate biosynthesis in H. coronarium. The emission of methyl benzoate in H. coronarium was found to be flower-specific and developmentally regulated. As such, seven candidate genes associated with methyl benzoate biosynthesis were identified from flower transcriptome of H. coronarium and isolated. Among them, HcBSMT1 and HcBSMT2 were demonstrated to catalyze the methylation of benzoic acid and salicylic acid to form methyl benzoate and methyl salicylate, respectively. Methyl salicylate is a minor constituent of H. coronarium floral scent. Kinetic analysis revealed that HcBSMT2 exhibits a 16.6-fold lower Km value for benzoic acid than HcBSMT1, indicating its dominant role for floral methyl benzoate formation. The seven genes associated with methyl benzoate biosynthesis exhibited flower-specific or flower-preferential expression that was developmentally regulated. The gene expression and correlation analysis suggests that HcCNL and HcBSMT2 play critical roles in the regulation of methyl benzoate biosynthesis. Comparison of emission and gene expression among four Hedychium species suggested that coordinated and high-level expression of biosynthetic pathway genes is responsible for the massive emission of floral methyl benzoate in H. coronarium. Our results provide new insights into the molecular mechanism for methyl benzoate biosynthesis in monocots and identify useful molecular targets for genetic modification of scent-related traits in Hedychium.


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 1181-1181
Author(s):  
Arati Khanna-Gupta ◽  
Matthew Silver ◽  
William Hankey ◽  
Hong Sun ◽  
Nancy Berliner

Abstract CCAAT enhancer binding protein alpha (C/EBPα) has been shown to be a master regulator of granulopoiesis It is expressed at high levels throughout myeloid differentiation and binds to multiple myeloid-specific gene promoters at different stages of maturation. Mice nullizygous for C/EBPα display a selective early block in granulocytic differentiation. Furthermore, C/EBPα mutations leading to loss of C/EBPα function have been demonstrated in a subset of patients with AML. A complete understanding of the regulation of this key factor during myelopoiesis is therefore critical. Studies from our laboratory have demonstrated that lactoferrin (LF) gene expression in the developing neutrophil is dependent on a C/EBP binding site in the LF gene promoter. Using ChIP analysis of LF non-expressing and expressing cells, we demonstrated that C/EBPα binds to the LF promoter in uninduced myeloid cells, which do not express LF. Induction of differentiation, associated with LF expression, correlates with a loss of C/EBPα binding and a gain of C/EBPε binding coincident with increased C/EBPε expression. Hence, we reasoned that post-translational modification(s) of C/EBPα during neutrophil maturation alters its transcriptional activity, thus altering LF gene expression. C/EBPα was recently shown to be post-translationally modified by small ubiquitin-related modifier (SUMO) at a lysine residue (K159) within a region of the C/EBPα protein that can negatively affect transcriptional activity. Sumoylation at K159 is thought to hamper transactivation by preventing association of the SWI/SNF chromatin remodeling complex. We demonstrate that the levels of sumoylated C/EBPα decrease upon neutrophil maturation, and that transactivation of a LF promoter reporter is significantly enhanced by a sumoylation mutant of C/EBPα (K159A). Additionally, in oligonucleotide pull down assays, sumoylated C/EBPα binds to the C/EBP site in the LF promoter in uninduced myeloid cells while loss of sumoylation correlates with loss of C/EBPα binding and LF expression. We therefore conclude that sumoylated C/EBPα is associated with the negative regulation of LF in early myeloid cells. Several C/EBP family members, including shorter isoforms, have negative regulatory functions. C/EBP homologous protein (CHOP/C/EBPζ/gadd 153, CHOP) is one such factor. Transient co-transfection analysis of a LF promoter reporter with expression plasmids for C/EBPα and CHOP demonstrated a steep decline in C/EBPα mediated transactivation. This CHOP-mediated decline in transactivation was specific for C/EBPα, as CHOP induced no significant change in transactivation by C/EBPε. Additionally, EMSA analyses using extracts from 293T cells overexpressing C/EBPα, C/EBPε and CHOP demonstrated that increasing levels of CHOP could remove C/EBPα, but not C/EBPε, from the C/EBP site in the LF promoter. Since CHOP levels increase during neutrophil maturation and CHOP does not recognize C/EBP cis elements, we hypothesize that CHOP sequesters C/EBPα and prevents its binding. We propose the following model: Sumoylated C/EBPα binds the LF promoter in early myeloid cells and inhibits its expression. Upon induction of maturation, levels of CHOP increase, inducing heterodimerization with unsumoylated C/EBPα. Because CHOP-C/EBPα heterodimers will not bind canonical C/EBP binding sites, this decreases C/EBPα binding to the LF promoter. This change in binding dynamics allows C/EBPε to bind the LF promoter, resulting in high level LF expression.


2021 ◽  
Vol 12 ◽  
Author(s):  
Hasan Mehraj ◽  
Satoshi Takahashi ◽  
Naomi Miyaji ◽  
Ayasha Akter ◽  
Yutaka Suzuki ◽  
...  

Covalent modifications of histone proteins act as epigenetic regulators of gene expression. We report the distribution of two active histone marks (H3K4me3 and H3K36me3) in 14-day leaves in two lines of Brassica rapa L. by chromatin immunoprecipitation sequencing. Both lines were enriched with H3K4me3 and H3K36me3 marks at the transcription start site, and the transcription level of a gene was associated with the level of H3K4me3 and H3K36me3. H3K4me3- and H3K36me3-marked genes showed low tissue-specific gene expression, and genes with both H3K4me3 and H3K36me3 had a high level of expression and were constitutively expressed. Bivalent active and repressive histone modifications such as H3K4me3 and H3K27me3 marks or antagonistic coexistence of H3K36me3 and H3K27me3 marks were observed in some genes. Expression may be susceptible to changes by abiotic and biotic stresses in genes having both H3K4me3 and H3K27me3 marks. We showed that the presence of H3K36me3 marks was associated with different gene expression levels or tissue specificity between paralogous paired genes, suggesting that H3K36me3 might be involved in subfunctionalization of the subgenomes.


2019 ◽  
Author(s):  
Marta I. Terry ◽  
Marta Carrera-Alesina ◽  
Julia Weiss ◽  
Marcos Egea-Cortines

AbstractThe plant circadian clock coordinates environmental signals with internal processes. We characterized the genomic and transcriptomic structure of the Petunia hybrida W115 clock in leaves and petals. We found three levels of evolutionary differences. First, PSEUDO-RESPONSE REGULATORS PhPRR5a, PhPRR5b, PhPRR7a, PhPRR7b, and GIGANTEA PhGI1 and PhGI2, differed in gene structure including exon number and deletions including the CCT domain of the PRR family. Second, leaves showed preferential day expression while petals tended to display night expression. Under continuous dark, most genes were delayed in leaves and petals. Importantly, photoperiod sensitivity of gene expression was tissue specific as TIMING OF CAB EXPRESSION PhNTOC1 was affected in leaves but not in petals, and PhPRR5b, PhPRR7b and the ZEITLUPE ortholog CHANEL, PhCHL, were modified in petals but not leaves. Third, we identified a strong transcriptional noise at different times of the day, and high robustness at dawn in leaves and dusk in petals, coinciding with the coordination of photosynthesis and scent emission. Our results indicate multilayered evolution of the Petunia clock including gene structure, number of genes and transcription patterns. The major transcriptional reprogramming of the clock in petals, with night expression may be involved in controlling scent emission in the dark.HighlightThe petunia leaf circadian clock shows maxima during the day while petal clock does it during the night. Reaction to dark is organ specific.


Endocrinology ◽  
2012 ◽  
Vol 153 (11) ◽  
pp. 5637-5644 ◽  
Author(s):  
Xiujun Fan ◽  
Matthew Petitt ◽  
Matthew Gamboa ◽  
Mei Huang ◽  
Sabita Dhal ◽  
...  

Abstract Molecular understanding of placental functions and pregnancy disorders is limited by the absence of methods for placenta-specific gene manipulation. Although persistent placenta-specific gene expression has been achieved by lentivirus-based gene delivery methods, developmentally and physiologically important placental genes have highly stage-specific functions, requiring controllable, transient expression systems for functional analysis. Here, we describe an inducible, placenta-specific gene expression system that enables high-level, transient transgene expression and monitoring of gene expression by live bioluminescence imaging in mouse placenta at different stages of pregnancy. We used the third generation tetracycline-responsive tranactivator protein Tet-On 3G, with 10- to 100-fold increased sensitivity to doxycycline (Dox) compared with previous versions, enabling unusually sensitive on-off control of gene expression in vivo. Transgenic mice expressing Tet-On 3G were created using a new integrase-based, site-specific approach, yielding high-level transgene expression driven by a ubiquitous promoter. Blastocysts from these mice were transduced with the Tet-On 3G-response element promoter-driving firefly luciferase using lentivirus-mediated placenta-specific gene delivery and transferred into wild-type pseudopregnant recipients for placenta-specific, Dox-inducible gene expression. Systemic Dox administration at various time points during pregnancy led to transient, placenta-specific firefly luciferase expression as early as d 5 of pregnancy in a Dox dose-dependent manner. This system enables, for the first time, reliable pregnancy stage-specific induction of gene expression in the placenta and live monitoring of gene expression during pregnancy. It will be widely applicable to studies of both placental development and pregnancy, and the site-specific Tet-On G3 mouse will be valuable for studies in a broad range of tissues.


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