endogenous clock
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2021 ◽  
Author(s):  
Vinaya Shetty ◽  
Jacob I Meyers ◽  
Ying Zhang ◽  
Christine Merlin ◽  
Michel A Slotman

Abstract Like other insects, Aedes aegypti displays strong daily patterns in host seeking and mating. Much of these behaviors are believed to be under the control of a circadian clock, an endogenous timekeeping mechanism relying on transcriptional/translational negative feedback loops that drive rhythmic physiology and behavior. To examine the connection between the circadian clock and various Ae. aegypti behaviors, we knocked out the core clock gene cycle using CRISPR/Cas9. We found that the rhythmic pattern and intensity of mRNA expression of seven circadian genes, including AeCyc-/-, were altered across the day/night cycle as well as in constant darkness conditions. We further show that, if expressed, the mutant CYC protein is incapable of forming a dimer with CLK to stimulate per expression and that the endogenous clock is disabled in AeCyc-/- mosquitoes. AeCyc-/- do not display the bimodal locomotor activity pattern of wild type, have a significantly reduced response to host odor, reduced egg hatching rates, delayed embryonic development, and reduced adult survival and mating success. Surprisingly, however, the propensity to blood feed in AeCyc-/- females is significantly higher than in wildtype females. Together with other recent work on the circadian clock control of key aspects of mosquito biology, our data on how cycle KO affects mosquito behavior and fitness provides a basis for further work into the pathways that connect the mosquito endogenous clock to its vector competence.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yuji Sano ◽  
Tomoyo Okumura ◽  
Naoko Murakami-Sugihara ◽  
Kentaro Tanaka ◽  
Takanori Kagoshima ◽  
...  

AbstractWe report here hourly variations of Mg/Ca, Sr/Ca, and Ba/Ca ratios in a Mediterranean mussel shell (Mytilus galloprovincialis) collected at the Otsuchi bay, on the Pacific coast of northeastern Japan. This bivalve was living in the intertidal zone, where such organisms are known to form a daily or bidaily growth line comprised of abundant organic matter. Mg/Ca ratios of the inner surface of the outer shell layer, corresponding to the most recent date, show cyclic changes at 25–90 μm intervals, while no interpretable variations are observed in Sr/Ca and Ba/Ca ratios. High Mg/Ca ratios were probably established by (1) cessation of the external supply of Ca and organic layer forming when the shell is closed at low tide, and (2) the strong binding of Mg to the organic layer, but not of Sr and Ba. Immediately following the great tsunami induced by the 2011 Tohoku earthquake, Mg/Ca enrichment occurred, up to 10 times that of normal low tide, while apparent Ba/Ca enrichment was observed for only a few days following the event, therefore serving a proxy of the past tsunami. Following the tsunami, periodic peaks and troughs in Mg/Ca continued, perhaps due to a biological memory effect as an endogenous clock.


2021 ◽  
Vol 12 ◽  
Author(s):  
Changgui Gu ◽  
Jiahui Li ◽  
Jian Zhou ◽  
Huijie Yang ◽  
Jos Rohling

A master clock located in the suprachiasmatic nucleus (SCN) regulates the circadian rhythm of physiological and behavioral activities in mammals. The SCN has two main functions in the regulation: an endogenous clock produces the endogenous rhythmic signal in body rhythms, and a calibrator synchronizes the body rhythms to the external light-dark cycle. These two functions have been determined to depend on either the dynamic behaviors of individual neurons or the whole SCN neuronal network. In this review, we first introduce possible network structures for the SCN, as revealed by time series analysis from real experimental data. It was found that the SCN network is heterogeneous and sparse, that is, the average shortest path length is very short, some nodes are hubs with large node degrees but most nodes have small node degrees, and the average node degree of the network is small. Secondly, the effects of the SCN network structure on the SCN function are reviewed based on mathematical models of the SCN network. It was found that robust rhythms with large amplitudes, a high synchronization between SCN neurons and a large entrainment ability exists mainly in small-world and scale-free type networks, but not other types. We conclude that the SCN most probably is an efficient small-world type or scale-free type network, which drives SCN function.


2021 ◽  
Author(s):  
Yuji Sano ◽  
Tomoyo Okumura ◽  
Naoko Murakami-Sugihara ◽  
Kentaro Tanaka ◽  
Takanori Kagoshima ◽  
...  

Abstract We report here hourly variations of Mg/Ca, Sr/Ca and Ba/Ca ratios in a Mediterranean mussel shell (Mytilus galloprovincialis) collected at the Otsuchi bay, on the Pacific coast of northeastern Japan. This bivalve was living in the intertidal zone, where such organisms are known to form a daily or bidaily growth line comprised of abundant organic matter. Mg/Ca ratios of the inner surface of the outer shell layer, corresponding to the most recent date, show cyclic changes at 25-90 mm intervals, while no valuable variations are observed in Sr/Ca and Ba/Ca ratios. High Mg/Ca ratios were probably established when the bivalve was located at low tide with a reduced supply of Ca from seawater. Immediately following the great tsunami induced by the 2011 Tohoku earthquake, Mg/Ca enrichment occurred, up to 10 times that of normal low tide, while apparent Ba/Ca enrichment was observed for only a few days following the event, implementing a proxy of the past tsunami. Following the tsunami, periodic peaks and troughs in Mg/Ca continued, perhaps due to a biological memory effect as an endogenous clock.


2019 ◽  
Vol 9 (11) ◽  
pp. 115 ◽  
Author(s):  
Silvia Paolucci ◽  
Elena Dalla Benetta ◽  
Lucia Salis ◽  
David Doležel ◽  
Louis van de Zande ◽  
...  

Many physiological processes of living organisms show circadian rhythms, governed by an endogenous clock. This clock has a genetic basis and is entrained by external cues, such as light and temperature. Other physiological processes exhibit seasonal rhythms, that are also responsive to light and temperature. We previously reported a natural latitudinal cline of photoperiodic diapause induction in the parasitic wasp Nasonia vitripennis in Europe and a correlated haplotype frequency for the circadian clock gene period (per). To evaluate if this correlation is reflected in circadian behaviour, we investigated the circadian locomotor activity of seven populations from the cline. We found that the proportion of rhythmic males was higher than females in constant darkness, and that mating decreased rhythmicity of both sexes. Only for virgin females, the free running period (τ) increased weakly with latitude. Wasps from the most southern locality had an overall shorter free running rhythm and earlier onset, peak, and offset of activity during the 24 h period, than wasps from the northernmost locality. We evaluated this variation in rhythmicity as a function of period haplotype frequencies in the populations and discussed its functional significance in the context of local adaptation.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Alberto Biscontin ◽  
Paolo Martini ◽  
Rodolfo Costa ◽  
Achim Kramer ◽  
Bettina Meyer ◽  
...  

Abstract Antarctic krill (Euphausia superba) is a high latitude pelagic organism which plays a central role in the Southern Ocean ecosystem. E. superba shows daily and seasonal rhythms in physiology and behaviour, which are synchronized with the environmental cycles of its habitat. Recently, the main components of the krill circadian machinery have been identified and characterized. However, the exact mechanisms through which the endogenous timing system operates the control and regulation of the overt rhythms remains only partially understood. Here we investigate the involvement of the circadian clock in the temporal orchestration of gene expression by using a newly developed version of a krill microarray platform. The analysis of transcriptome data from krill exposed to both light-dark cycles (LD 18:6) and constant darkness (DD), has led to the identification of 1,564 putative clock-controlled genes. A remarkably large proportion of such genes, including several clock components (clock, period, cry2, vrille, and slimb), show oscillatory expression patterns in DD, with a periodicity shorter than 24 hours. Energy-storage pathways appear to be regulated by the endogenous clock in accordance with their ecological relevance in daily energy managing and overwintering. Our results provide the first representation of the krill circadian transcriptome under laboratory, free-running conditions.


2019 ◽  
Vol 34 (5) ◽  
pp. 515-524
Author(s):  
Changgui Gu ◽  
Xiangwei Gu ◽  
Ping Wang ◽  
Henggang Ren ◽  
Tongfeng Weng ◽  
...  

In mammals, an endogenous clock located in the suprachiasmatic nucleus (SCN) of the brain regulates the circadian rhythms of physiological and behavioral activities. The SCN is composed of about 20,000 neurons that are autonomous oscillators with nonidentical intrinsic periods ranging from 22 h to 28 h. These neurons are coupled through neurotransmitters and synchronized to form a network, which produces a robust circadian rhythm of a uniform period. The neurons, which are the nodes in the network, are known to be heterogeneous in their characteristics, which is reflected in different phenotypes and different functionality. This heterogeneous nature of the nodes of the network leads to the question as to whether the structure of the SCN network is assortative or disassortative. Thus far, the disassortativity of the SCN network has not been assessed and neither have its effects on the collective behaviors of the SCN neurons. In the present study, we build a directed SCN network composed of hundreds of neurons for a single slice using the method of transfer entropy, based on the experimental data. Then, we measured the synchronization degree as well as the disassortativity coefficient of the network structure (calculated by either the out-degrees or the in-degrees of the nodes) and found that the network of the SCN is a disassortative network. Furthermore, a positive relationship is observed between the synchronization degree and disassortativity of the network, which is confirmed by simulations of our modeling. Our finding suggests that the disassortativity of the network structure plays a role in the synchronization between SCN neurons; that is, the synchronization degree increases with the increase of the disassortativity, which implies that a more heterogeneous coupling in the network of the SCN is important for proper function of the SCN.


2019 ◽  
Author(s):  
Silvia Paolucci ◽  
Elena Dalla Benetta ◽  
Lucia Salis ◽  
David Doležel ◽  
Louis van de Zande ◽  
...  

ABSTRACTMany physiological processes of living organisms show circadian rhythms, governed by an endogenous clock. This clock has a genetic basis and is entrained by external cues such as light and temperature. Other physiological processes exhibit seasonal rhythms, that are also responsive to light and temperature. We previously reported a natural latitudinal cline of photoperiodic diapause induction in the parasitic wasp Nasonia vitripennis in Europe and a correlated haplotype frequency for the circadian clock gene period (per). To evaluate if this correlation is reflected in circadian behaviour, we investigated circadian locomotor activity of seven populations from the cline. We found that the proportion of rhythmic males is higher than females in constant darkness, and that mating decreased rhythmicity of both sexes. Only for virgin females, the free running period (τ) increased weakly with latitude. Wasps from the most southern locality had an overall shorter free running rhythm and earlier onset, peak and offset of activity during the 24 h period, than wasps from the northernmost locality. We evaluate this variation in rhythmicity as a function of period haplotype frequencies in the populations and discuss its functional significance in the context of local adaptation.


2019 ◽  
Vol 15 (1) ◽  
pp. 20180299 ◽  
Author(s):  
Laura Payton ◽  
Damien Tran

Organisms possess endogenous clock mechanisms that are synchronized to external cues and orchestrate biological rhythms. Internal timing confers the advantage of being able to anticipate environmental cycles inherent in life on Earth and to prepare accordingly. Moonlight-entrained rhythms are poorly described, being much less investigated than circadian and circannual rhythms synchronized by sunlight. Yet focus on these lunar rhythms is highly relevant to understanding temporal organization of biological processes. Here, we investigate moonlight cycle effects on valve activity behaviour of the oyster Crassostrea gigas . Our results show that oysters modulate valve behaviour according to both intensity and direction of the lunar illumination cycle. As a consequence, valve opening amplitude is significantly increased at third quarter Moons (decreasing lunar illumination) compared with first quarter Moons (increasing lunar illumination) despite identical lunar illumination, and this indicates that oyster modulation of valve behaviour by moonlight cycles is not a direct response to lunar illumination. We propose that oysters use moonlight cycles to synchronize behaviour and also other physiological and ecological aspects of this benthic mollusc bivalve.


PsyCh Journal ◽  
2017 ◽  
Vol 6 (4) ◽  
pp. 277-289 ◽  
Author(s):  
Charlotte Helfrich-Förster

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