scholarly journals Genome Sequence of a Heterotrophic Nitrifier and Aerobic Denitrifier, Paracoccus denitrificans Strain ISTOD1, Isolated from Wastewater

2018 ◽  
Vol 6 (15) ◽  
pp. e00210-18 ◽  
Author(s):  
Kristina Medhi ◽  
Arti Mishra ◽  
Indu Shekhar Thakur
Keyword(s):  
Genome Sequence ◽  
Phosphorus Removal ◽  
Paracoccus Denitrificans ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Draft Genome Sequence ◽  
Nitrogen And Phosphorus ◽  
Nitrogen And Phosphorus Removal ◽  
Content Type ◽  
Denitrifying Bacterium

ABSTRACT We report here the draft genome sequence of Paracoccus denitrificans strain ISTOD1 of 4.9 Mb, isolated from wastewater. It has been identified as a heterotrophic nitrifying and aerobic denitrifying bacterium. Genomic analysis revealed genes related to nitrogen and phosphorus removal, showing that the strain holds potential for bioremediation and biorefinery uses.

scholarly journals Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166T, a Butyrate-Producing Bacterium, Isolated from Human Feces

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Mitsuo Sakamoto ◽  
Nao Ikeyama ◽  
Masahiro Yuki ◽  
Moriya Ohkuma
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Draft Genome Sequence ◽  
Human Feces ◽  
Human Gut ◽  
Content Type

Here, we report the draft genome sequence of Lawsonibacter asaccharolyticus JCM 32166T, a butyrate-producing bacterium, isolated from human feces. The genomic analysis reveals genes for butyrate synthesis and will facilitate the study on the role of this strain in the human gut.

scholarly journals Draft Genome Sequence of Listeria monocytogenes CIIMS-NV-3, a Strain Isolated from Vaginal Discharge of a Woman from Central India

2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Pooja M. Kishnani ◽  
Nitin V. Kurkure ◽  
Sukhadeo B. Barbuddhe ◽  
Swapnil P. Doijad ◽  
Trinad Chakraborty ◽  
...  
Keyword(s):  
Listeria Monocytogenes ◽  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Central India ◽  
Vaginal Swab ◽  
Comparative Genomic Analysis ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Content Type

We present here the draft genome sequence of Listeria monocytogenes CIIMS-NV-3, a serovar 4b strain isolated from the vaginal swab of a female patient from central India. The availability of this genome may provide useful information on virulence characteristics for comparative genomic analysis.

scholarly journals Draft Genome Sequence of Faecalimonas umbilicata JCM 30896T, an Acetate-Producing Bacterium Isolated from Human Feces

2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Mitsuo Sakamoto ◽  
Nao Ikeyama ◽  
Masahiro Yuki ◽  
Moriya Ohkuma
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Draft Genome Sequence ◽  
Vitamin B ◽  
Human Feces ◽  
Human Gut ◽  
Content Type

Here, we report the draft genome sequence of Faecalimonas umbilicata JCM 30896T, an acetate-producing bacterium isolated from human feces. The genomic analysis reveals genes for acetate and vitamin B12 synthesis and will facilitate the study of the role of this strain in the human gut.

scholarly journals Draft Genome Sequence of Vibrio vulnificus 86573B, a Bacterium Isolated from Diseased Tilapia in Taiwan

2018 ◽  
Vol 7 (1) ◽  
Author(s):  
Shu-Ting Cho ◽  
Yi-Ming Tsai ◽  
Chun-Yao Chen ◽  
Chih-Horng Kuo
Keyword(s):  
Genome Sequence ◽  
Vibrio Vulnificus ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Content Type

Vibrio vulnificus 86573B is a biotype 1 strain isolated from a moribund tilapia collected in Kaohsiung, Taiwan, during an outbreak early in 1997. Here, we report the draft genome sequence of this bacterium to facilitate the investigation of its biology and future comparative genomic analysis.

scholarly journals Genome Sequence of Lactobacillus plantarum JMCC0013, Isolated from Traditional Chinese Fermented Milk

2018 ◽  
Vol 6 (23) ◽  
Author(s):  
Shijie Wang ◽  
Lili Feng ◽  
Dong Zhang ◽  
Yuling Xue ◽  
Yiping Xun ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Fermented Milk ◽  
Fermented Food ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Precious Resource

ABSTRACT Fermented food products have been consumed for thousands of years in China, so fermented Chinese foods may contain huge lactic acid bacterial resources. Here, we report the draft genome sequence of a Lactobacillus plantarum isolate, JMCC0013, collected from traditional Chinese fermented milk, which provides a precious resource for the genomic analysis of Lactobacillus strains.

scholarly journals Draft Genome Sequence of Anoxybacillus mongoliensis Strain MB4, a Sulfur-Utilizing Aerobic Thermophile Isolated from a Hot Spring in Tattapani, Central India

2017 ◽  
Vol 5 (9) ◽  
Author(s):  
Parul Mittal ◽  
Rituja Saxena ◽  
Vineet K. Sharma
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Sulfur Metabolism ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Central India ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Anoxybacillus mongoliensis strain MB4, an aerobic thermophile, was isolated from a hot spring located in central India. Its first draft genome sequence reported in this study comprises 2,807,516 bp and 2,853 protein-coding genes. Detailed genomic analysis indicates that it is capable of performing sulfur metabolism.

scholarly journals Draft Genome Sequence of an Escherichia coli Sequence Type 155 Strain Isolated from Sewage in Kerala, India

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Amrita Salim ◽  
Pradeesh Babu ◽  
Keerthi Mohan ◽  
Manju Moorthy ◽  
Devika Raj ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Sequence Type ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Content Type ◽  
E Coli

ABSTRACT We report the draft genome sequence of Escherichia coli ASBT-1, a representative of E. coli sequence type 155 (ST155), obtained from India. Considering the known wide variety of pathogenic and antibiotic resistance potentials, this strain should be of great interest for detailed comparative genomic analysis.

scholarly journals Draft Genome Sequence of Zobellella denitrificans ZD1 (JCM 13380), a Salt-Tolerant Denitrifying Bacterium Capable of Producing Poly(3-Hydroxybutyrate)

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Yu-Wei Wu ◽  
Yiru Shao ◽  
Kamil Khanipov ◽  
Georgiy Golovko ◽  
Maria Pimenova ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Mangrove Ecosystem ◽  
Draft Genome Sequence ◽  
Salt Tolerant ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Denitrifying Bacterium ◽  
Associated Production

ABSTRACT Zobellella denitrificans ZD1, isolated from sediments of an estuarine mangrove ecosystem in Taiwan, exhibits growth-associated production of biopolymer poly(3-hydroxybutyrate) (PHB). This work reports the 4.05-Mbp draft genome sequence of Z. denitrificans ZD1, consisting of 217 contigs with a G+C content of 63.8% and 3,672 protein-coding sequences.

scholarly journals Draft Genome Sequence of Pseudoalteromonas sp. Strain A25, a Bacterium with Algicidal Activity against Diatoms

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Hirotaka Kitaguchi ◽  
Nanase Masu ◽  
Keiko Fujii ◽  
Atsushi Mitsutani
Keyword(s):  
Genome Sequence ◽  
Marine Bacterium ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Draft Genome Sequence ◽  
Algicidal Activity ◽  
Content Type

Pseudoalteromonas sp. strain A25 is a marine bacterium that reveals strong algicidal activity against diatoms. We report the draft genome sequence for this strain, which consists of two contigs (3,887,303 bp and 850,536 bp). Further genomic analysis might facilitate an understanding of the algicidal mechanisms of this strain.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

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