scholarly journals Draft Genome Sequences of Two Strains of Paenibacillus glucanolyticus with the Ability To Degrade Lignocellulose

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Stephanie L. Mathews ◽  
Joel Pawlak ◽  
Amy M. Grunden
Keyword(s):  
Draft Genome ◽  
Carbon Sources ◽  
Pulp Mill ◽  
Illumina Miseq ◽  
Genome Sequences ◽  
Mill Waste

Paenibacillus glucanolyticus 5162, a bacterium isolated from soil, and Paenibacillus glucanolyticus SLM1, a bacterium isolated from pulp mill waste, can utilize cellulose, hemicellulose and lignin as sole carbon sources for growth. These two strains of Paenibacillus glucanolyticus were sequenced using PacBio and Illumina MiSeq technologies.

scholarly journals Draft Genome Sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, Novel Potential Probiotic Strains for Honeybees (Apis mellifera L.)

2018 ◽  
Vol 7 (6) ◽  
Author(s):  
Marcela Carina Audisio ◽  
Leonardo Albarracín ◽  
Maria Julia Torres ◽  
Lucila Saavedra ◽  
Elvira Maria Hebert ◽  
...  
Keyword(s):  
Apis Mellifera ◽  
Genome Sequencing ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Whole Genome ◽  
Genome Sequences ◽  
Lactobacillus Johnsonii ◽  
Lactobacillus Salivarius ◽  
Content Type ◽  
Probiotic Strains

This report describes the draft genome sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, probiotic strains isolated from the gut of honeybee Apis mellifera workers. The reads were generated by a whole-genome sequencing (WGS) strategy on an Illumina MiSeq sequencer and were assembled into contigs with total sizes of 2,054,490 and 2,137,413 bp for the A3iob and CRL1647 strains, respectively.

scholarly journals Draft Genome Sequences of Two Novel Sub-Antarctic Williamsia Species

2017 ◽  
Vol 5 (41) ◽  
Author(s):  
Akhikun Nahar ◽  
Anthony L. Baker ◽  
Michael A. Charleston ◽  
John P. Bowman ◽  
Margaret L. Britz
Keyword(s):  
Genome Sequence ◽  
Metabolic Pathways ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Shotgun Sequencing ◽  
Sequence Information ◽  
Sequencing Technology ◽  
Genome Sequences ◽  
Cold Tolerant ◽  
Genome Sequence Information

ABSTRACT Illumina MiSeq shotgun sequencing technology was used to sequence the genomes of two novel sub-Antarctic Williamsia species, designated strains 1135 and 1138. The estimated genome sizes for strains 1135 and 1138 are 5.99 Mb and 6.08 Mb, respectively. This genome sequence information will aid in understanding the lipid metabolic pathways of cold-tolerant Williamsia species.

scholarly journals Draft Genome Sequences of Two Strains of Salmonella enterica Serovar Typhimurium Displaying Different Virulence in an Experimental Chicken Model

2017 ◽  
Vol 5 (6) ◽  
Author(s):  
Dele Ogunremi ◽  
Burton Blais ◽  
Hongsheng Huang ◽  
Linru Wang ◽  
Mohamed Elmufti ◽  
...  
Keyword(s):  
Salmonella Enterica ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Virulent Strain ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Genome Sequences ◽  
Content Type ◽  
Serovar Typhimurium ◽  
Chicken Model ◽  
Roche 454

ABSTRACT Salmonella enterica serovar Typhimurium strains 22495 and 22792, obtained from wild birds, were found to display different virulence attributes in an experimental chicken model. Closed genome sequences were assembled after sequencing with the Roche 454 and Illumina MiSeq platforms. An additional plasmid was present in the more virulent strain 22495.

scholarly journals Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria

2017 ◽  
Vol 5 (32) ◽  
Author(s):  
Terence S. Crofts ◽  
Bin Wang ◽  
Aaron Spivak ◽  
Tara A. Gianoulis ◽  
Kevin J. Forsberg ◽  
...  
Keyword(s):  
Carbon Cycle ◽  
Draft Genome ◽  
Carbon Sources ◽  
Genome Sequences ◽  
Catabolic Pathways

ABSTRACT Most antibiotics are derived from the soil, but their catabolism there, which is necessary to close the antibiotic carbon cycle, remains uncharacterized. We report the first draft genome sequences of soil Proteobacteria identified for subsisting solely on β-lactams as their carbon sources. The genomes encode multiple β-lactamases, although their antibiotic catabolic pathways remain enigmatic.

scholarly journals Draft Genome Sequences of Lactococcus lactis Strains MS22314, MS22333, MS22336, and MS22337, Isolated from Fermented Camel Milk in Ethiopia

2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Esben Bragason ◽  
Christina Aaby Svendsen ◽  
Mitiku Eshetu Guya ◽  
Tesfemariam Berhe ◽  
Egon Bech Hansen
Keyword(s):  
Genome Size ◽  
Lactococcus Lactis ◽  
Draft Genome ◽  
Tetracycline Resistance ◽  
Illumina Miseq ◽  
Camel Milk ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The genome sequences of four Lactococcus lactis strains isolated from fermented camel milk were sequenced using paired-end Illumina MiSeq reads. The genome size of each strain was about 2.6 Mb, and three of the strains were annotated with tet(S) coding for tetracycline resistance.

scholarly journals Draft Genome Sequences of Two Bacillus anthracis Strains from Etosha National Park, Namibia

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Karoline Valseth ◽  
Camilla L. Nesbø ◽  
W. Ryan Easterday ◽  
Wendy C. Turner ◽  
Jaran S. Olsen ◽  
...  
Keyword(s):  
Bacillus Anthracis ◽  
National Park ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Illumina Miseq Sequencing ◽  
Miseq Sequencing ◽  
Genome Sequences ◽  
Plains Zebra

Bacillus anthracis strains K1 and K2 were isolated from two plains zebra anthrax carcasses in Etosha National Park, Namibia. These are draft genomes obtained by Illumina MiSeq sequencing of isolates collected from culture of blood-soaked soil from each carcass.

scholarly journals Draft Genome Sequences of Five Paenibacillus Species of Dairy Origin

2020 ◽  
Vol 9 (37) ◽  
Author(s):  
Atinuke M. Olajide ◽  
Shu Chen ◽  
Gisèle LaPointe
Keyword(s):  
Dairy Products ◽  
Draft Genome ◽  
Dairy Industry ◽  
Illumina Miseq ◽  
Genome Sequences ◽  
Illumina Miseq Platform ◽  
Miseq Platform ◽  
Paenibacillus Species ◽  
Gc Contents

ABSTRACT Paenibacillus species are important spoilage organisms in the dairy industry. The genomes of five Paenibacillus species which were isolated from dairy products in Canada were sequenced using the Illumina MiSeq platform. Draft genomes ranging from 5.1 to 7.1 Mb with GC contents of 49 to 53% were generated.

scholarly journals Draft Genome Sequences of 43 Lactobacillus Strains from the Species L. curvatus, L. fermentum, L. paracasei, L. plantarum, L. rhamnosus, and L. sakei, Isolated from Food Products

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Raffael C. Inglin ◽  
Leo Meile ◽  
Marc J. A. Stevens
Keyword(s):  
Draft Genome ◽  
Food Products ◽  
Illumina Miseq ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The genome sequences of 43 Lactobacillus strains from the species L. curvatus, L. fermentum, L. paracasei, L. plantarum, L. rhamnosus, and L. sakei were determined using Illumina MiSeq.

scholarly journals Draft Genome Sequences of Klebsiella pneumoniae Strains Isolated from Immunocompromised NOD-scid Gamma Research Mice

2019 ◽  
Vol 8 (42) ◽  
Author(s):  
Anthony Mannion ◽  
Niora Fabian ◽  
Melissa Stair ◽  
Jody Dzink-Fox ◽  
Sebastian E. Carrasco ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Genome Sequences ◽  
Pathogenic Potential ◽  
Content Type ◽  
Nsg Mice ◽  
Genes Encoding ◽  
Clinical Illness ◽  
Biomedical Research Institute

Thirteen Klebsiella pneumoniae isolates cultured from feces, intestines, liver, lungs, and blood from immunocompromised NOD-scid gamma (NSG) mice with clinical illness, housed at a biomedical research institute, were sequenced using Illumina MiSeq technology for elucidation of pathogenic potential and genes encoding antibiotic resistance.

scholarly journals Draft Genome Sequences of Two Novel Salmonella enterica subsp. enterica Strains Isolated from Low-Moisture Foods with Applications in Food Safety Research

2018 ◽  
Vol 6 (13) ◽  
Author(s):  
Devon R. Radford ◽  
Carlos G. Leon-Velarde ◽  
Shu Chen ◽  
Amir M. Hamidi Oskouei ◽  
Sampathkumar Balamurugan
Keyword(s):  
Salmonella Enterica ◽  
De Novo ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Consensus Method ◽  
Genome Sequences ◽  
Content Type ◽  
Illumina Miseq Platform ◽  
Safety Research ◽  
Miseq Platform

ABSTRACT The genomes of two strains of Salmonella enterica subsp. enterica serovar Cubana and serovar Muenchen, isolated from dry hazelnuts and chia seeds, respectively, were sequenced using the Illumina MiSeq platform, assembled de novo using the overlap-layout-consensus method, and aligned to their respective most identical sequence genome scaffolds using MUMMER and BLAST searches.

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