scholarly journals Genome Sequence of Torulaspora microellipsoides CLIB 830T

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
Virginie Galeote ◽  
Frédéric Bigey ◽  
Hugo Devillers ◽  
Raúl A. Ortiz-Merino ◽  
Sylvie Dequin ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genome Sequence ◽  
Horizontal Transfer ◽  
Reference Genome ◽  
Genetic Material ◽  
Ascomycetous Yeast ◽  
Content Type ◽  
Transfer Mechanisms

We report here the genome sequence of the ascomycetous yeast Torulaspora microellipsoides CLIB 830T. A reference genome for this species, which has been found as a donor of genetic material in wine strains of Saccharomyces cerevisiae, will undoubtedly give clues to our understanding of horizontal transfer mechanisms between species in the wine environment.

scholarly journals Draft Genome Sequence of Saccharomyces cerevisiae Strain Awamori Number 101, Commonly Used to Make Awamori, a Traditional Spirit, in Okinawa, Japan

2021 ◽  
Vol 10 (25) ◽  
Author(s):  
Masatoshi Tsukahara ◽  
Kotaro Ise ◽  
Maiko Nezuo ◽  
Haruna Azuma ◽  
Takeshi Akao ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Next Generation ◽  
Industrial Strain ◽  
Content Type ◽  
Short Reads ◽  
Generation Sequencing

We report here the draft genome sequence for Saccharomyces cerevisiae strain Awamori number 101, an industrial strain used for producing awamori, a distilled alcohol beverage. It was constructed by assembling the short reads obtained by next-generation sequencing. The 315 contigs constitute an 11.5-Mbp genome sequence coding 6,185 predicted proteins.

scholarly journals Complete Genome Sequence of Escherichia coli Antibiotic Resistance Isolate Bank Number 0346

2021 ◽  
Vol 10 (23) ◽  
Author(s):  
Keira L. Stuart ◽  
Darrell O. Bayles ◽  
Sarah M. Shore ◽  
Tracy L. Nicholson
Keyword(s):  
Public Health ◽  
Escherichia Coli ◽  
Antibiotic Resistance ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Horizontal Transfer ◽  
Complete Genome ◽  
Content Type ◽  
Health Concerns

Plasmid-mediated polymyxin resistance encoded by mcr-1 has increased public health concerns due to the potential for rapid horizontal transfer. Here, we report the complete genome sequence of colistin-resistant Escherichia coli Antibiotic Resistance Isolate Bank number 0346, harboring a plasmid-borne mcr-1 gene.

scholarly journals Whole-Genome Sequence of an Isogenic Haploid Strain, Saccharomyces cerevisiae IR-2idA30(MATa), Established from the Industrial Diploid Strain IR-2

2019 ◽  
Vol 8 (17) ◽  
Author(s):  
Kazuhiro E. Fujimori ◽  
Yosuke Kobayashi ◽  
Taisuke Seike ◽  
Takehiko Sahara ◽  
Satoru Ohgiya ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genome Sequence ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Diploid Strain ◽  
Haploid Strain ◽  
Content Type ◽  
Sequencing Errors ◽  
Long Reads

We present the draft genome sequence of an isogenic haploid strain, IR-2idA30(MAT a), established from Saccharomyces cerevisiae IR-2. Assembly of long reads and previously obtained contigs from the genome of diploid IR-2 resulted in 50 contigs, and the variations and sequencing errors were corrected by short reads.

scholarly journals Draft Genome Sequence of Blood-Origin Streptococcus canis Strain FU149, Isolated from a Dog with Necrotizing Soft Tissue Infection

2020 ◽  
Vol 9 (35) ◽  
Author(s):  
Yasuto Fukushima ◽  
Yoshiteru Murata ◽  
Yukie Katayama ◽  
Yuzo Tsuyuki ◽  
Haruno Yoshida ◽  
...  
Keyword(s):  
Soft Tissue ◽  
Genome Sequence ◽  
Soft Tissue Infection ◽  
Reference Genome ◽  
Draft Genome ◽  
Tissue Infection ◽  
Draft Genome Sequence ◽  
Necrotizing Soft Tissue Infection ◽  
Content Type ◽  
Streptococcus Canis

ABSTRACT The draft genome sequence of the blood-origin Streptococcus canis strain FU149, isolated from a dog with a necrotizing soft tissue infection in Japan, is reported. The genome size was 2.108 Mbp, with a G+C content of 39.5%. Sequences unmapped to the reference genome sequence of NCTC 12191T (GenBank accession number LR134293) were characterized.

scholarly journals Genome Resequencing of Laboratory Stocks of Burkholderia pseudomallei K96243

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Sariqa Wagley ◽  
Andrew E. Scott ◽  
Philip M. Ireland ◽  
Joann L. Prior ◽  
Timothy P. Atkins ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Burkholderia Pseudomallei ◽  
Reference Genome ◽  
Single Nucleotide Variants ◽  
Genome Resequencing ◽  
Single Nucleotide ◽  
Content Type ◽  
Laboratory Cultures

We have resequenced the genomes of four Burkholderia pseudomallei K96243 laboratory cultures and compared them to the reported genome sequence that was published in 2004. Compared with the reference genome, these laboratory cultures harbored up to 42 single-nucleotide variants and up to 11 indels, including a 31.7-kb deletion in one culture.

scholarly journals Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Kerri M. Malone ◽  
Damien Farrell ◽  
Tod P. Stuber ◽  
Olga T. Schubert ◽  
Ruedi Aebersold ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphism ◽  
Mycobacterium Bovis ◽  
Genome Sequence ◽  
Bovine Tuberculosis ◽  
Reference Genome ◽  
Nucleotide Polymorphism ◽  
Single Nucleotide ◽  
Coding Sequences ◽  
Content Type ◽  
Reference Genome Sequence

ABSTRACT We report here an update to the reference genome sequence of the bovine tuberculosis bacillus Mycobacterium bovis AF2122/97, generated using an integrative multiomics approach. The update includes 42 new coding sequences (CDSs), 14 modified annotations, 26 single-nucleotide polymorphism (SNP) corrections, and disclosure that the RD900 locus, previously described as absent from the genome, is in fact present.

scholarly journals High-Quality Reference Genome Sequence for the Oomycete Vegetable Pathogen Phytophthora capsici Strain LT1534

2021 ◽  
Vol 10 (21) ◽  
Author(s):  
Jason E. Stajich ◽  
Andrea L. Vu ◽  
Howard S. Judelson ◽  
Gregory M. Vogel ◽  
Michael A. Gore ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Transcriptome Sequencing ◽  
Reference Genome ◽  
Phytophthora Capsici ◽  
Rna Seq ◽  
High Quality ◽  
Content Type ◽  
Wide Range ◽  
Illumina Data

The oomycete Phytophthora capsici is a destructive pathogen of a wide range of vegetable hosts, especially peppers and cucurbits. A 94.17-Mb genome assembly was constructed using PacBio and Illumina data and annotated with support from transcriptome sequencing (RNA-Seq) reads.

scholarly journals Draft Whole-Genome Sequence of “Candidatus Liberibacter asiaticus” Strain TX1712 from Citrus in Texas

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
W. Cai ◽  
Z. Yan ◽  
J. Rascoe ◽  
M. J. Stulberg
Keyword(s):  
Genome Sequence ◽  
Reference Genome ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Whole Genome Sequence ◽  
Candidatus Liberibacter Asiaticus ◽  
Content Type ◽  
Candidatus Liberibacter ◽  
Liberibacter Asiaticus ◽  
Reading Frames

The draft genome sequence of “Candidatus Liberibacter asiaticus” strain TX1712, obtained from a Texas citrus tree, is reported here. Strain TX1712 has a draft genome size of 1,203,333 bp, a G+C content of 36.4%, 1,230 predicted open reading frames, and 41 RNAs and comprises 97.4% of the psy62 reference genome.

scholarly journals Draft Genome Sequence of Saccharomyces cerevisiae Barra Grande (BG-1), a Brazilian Industrial Bioethanol-Producing Strain

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Natalia Coutouné ◽  
Aline Tieppo Nogueira Mulato ◽  
Diego Mauricio Riaño-Pachón ◽  
Juliana Velasco de Castro Oliveira
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Bioethanol Production ◽  
Industrial Strain ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Here, we present the draft genome sequence of Saccharomyces cerevisiae BG-1, a Brazilian industrial strain widely used for bioethanol production from sugarcane. The 11.7-Mb genome sequence consists of 216 scaffolds and harbors 5,607 predicted protein-coding genes.

scholarly journals Draft Genome Sequence of Saccharomyces cerevisiae Strain P-684, Isolated from Prunus verecunda

2020 ◽  
Vol 9 (41) ◽  
Author(s):  
Hiro Takahashi ◽  
Takayuki Yoshizaki ◽  
Hisashi Kondo ◽  
Taichiro Motomura ◽  
Masataka Murase ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Organic Acids ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT Saccharomyces cerevisiae strain P-684 is a yeast isolated from the flowers of Prunus verecunda ‘Antiqua,’ producing high quantities of malic and succinic acids in sake brewing. Here, we report the draft genome sequence of P-684, enlightening the mechanisms of biosynthesis of these organic acids by this strain.

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