scholarly journals Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain B6914-ARS

2017 ◽  
Vol 5 (44) ◽  
Author(s):  
Gaylen A. Uhlich ◽  
Erin R. Reichenberger ◽  
Bryan J. Cottrell ◽  
Pina Fratamico ◽  
Elisa Andreozzi
Keyword(s):  
Escherichia Coli ◽  
Disease Control ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Applied Research ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Control And Prevention ◽  
Shiga Toxin Genes

ABSTRACT Escherichia coli serotype O157:H7 strain B6914-MS1 is an isolate from the Centers for Disease Control and Prevention that is missing both Shiga toxin genes and has been used extensively in applied research studies. Here we report the genome sequence of strain B6914-ARS, a B6914-MS1 clone that has unique biofilm properties.

scholarly journals Complete Genome Sequence of Escherichia coli Phage vB_EcoS Sa179lw, Isolated from Surface Water in a Produce-Growing Area in Northern California

2018 ◽  
Vol 6 (27) ◽  
Author(s):  
Yen-Te Liao ◽  
Fang Liu ◽  
Xincheng Sun ◽  
Robert W. Li ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Surface Water ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Virulence Gene ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
E Coli ◽  
Escherichia Coli Phage

We report here the whole-genome sequence of a novel Escherichia coli phage, vB_EcoS Sa179lw, isolated from surface water collected in a produce-growing area. With the presence of a putative eae-like gene that was associated with previous non-O157 Shiga toxin-producing E. coli outbreaks, this phage is a candidate for the study of virulence gene transfer.

scholarly journals Investigating the Whole-Genome Sequence of a New Locus of Enterocyte Effacement-Positive Shiga Toxin-Producing Escherichia coli O157:H7 Strain Isolated from River Water

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Yujie Zhang ◽  
Yen-Te Liao ◽  
Alexandra Salvador ◽  
Xiaohong Sun ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Mississippi River ◽  
Shiga Toxin ◽  
Environmental Samples ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Escherichia Coli O157 ◽  
Content Type ◽  
Enterocyte Effacement

Diverse Shiga toxin-producing Escherichia coli (STEC) strains have been isolated from several environmental samples. Rivers are associated with the distribution of STEC pathogens in the environment. Thus, we report the complete genome sequence of a locus of enterocyte effacement (LEE)-positive STEC O157:H7 strain isolated from the Mississippi River.

scholarly journals Whole-Genome Sequence of Phage-Resistant Strain Escherichia coli DH5α

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Jingchao Chen ◽  
Yi Li ◽  
Kun Zhang ◽  
Hailei Wang
Keyword(s):  
Escherichia Coli ◽  
Comparative Analysis ◽  
Genome Sequence ◽  
Resistant Strain ◽  
Resistance Mechanism ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
E Coli ◽  
T4 Bacteriophage

ABSTRACT The genomes of many strains of Escherichia coli have been sequenced, as this organism is a classic model bacterium. Here, we report the genome sequence of Escherichia coli DH5α, which is resistant to a T4 bacteriophage (CCTCC AB 2015375), while its other homologous E. coli strains, such as E. coli BL21, DH10B, and MG1655, are not resistant to phage invasions. Thus, understanding of the genome of the DH5α strain, along with comparative analysis of its genome sequence along with other sequences of E. coli strains, may help to reveal the bacteriophage resistance mechanism of E. coli .

scholarly journals Whole-Genome Analysis of a Shiga Toxin-Producing Escherichia coli O103:H2 Strain Isolated from Cattle Feces

2020 ◽  
Vol 9 (45) ◽  
Author(s):  
Yujie Zhang ◽  
Yen-Te Liao ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Whole Genome Analysis ◽  
Content Type ◽  
Cattle Feces ◽  
Beef Products ◽  
Foodborne Outbreaks ◽  
Enterocyte Effacement

ABSTRACT Shiga toxin-producing Escherichia coli (STEC) serotype O103 is one of the primary pathogenic contaminants of beef products, contributing to several foodborne outbreaks in recent years. Here, we report the whole-genome sequence of a STEC O103:H2 strain isolated from cattle feces that contains a locus of enterocyte effacement (LEE) pathogenicity island.

scholarly journals Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
L. Bothma ◽  
D. Gonzalez-Ibeas ◽  
C. Mienie ◽  
C. C. Bezuidenhout ◽  
R. Adeleke
Keyword(s):  
Escherichia Coli ◽  
South Africa ◽  
Genome Sequence ◽  
Water Samples ◽  
Salmonella Enterica ◽  
Coli Strain ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Serovar Typhimurium

Salmonella enterica subsp. enterica serovar Typhimurium WG49 is widely used for enumeration of F-specific RNA (F-RNA) coliphages in water.

scholarly journals Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain PA20

2017 ◽  
Vol 5 (2) ◽  
Author(s):  
Gaylen A. Uhlich ◽  
George C. Paoli ◽  
Xinmin Zhang ◽  
Edward G. Dudley ◽  
Hillary M. Figler ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Transcription Factor ◽  
Clinical Isolate ◽  
Genome Sequence ◽  
Biofilm Formation ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Department Of Health ◽  
High Incidence

ABSTRACT Escherichia coli serotype O157:H7 strain PA20 is a Pennsylvania Department of Health clinical isolate. It has been used to study biofilm formation in O157:H7 clinical isolates, where the high incidence of prophage insertions in the mlrA transcription factor disrupts traditional csgD biofilm regulation. Here, we report the complete PA20 genome sequence.

scholarly journals Whole-Genome Sequence of Endophytic Plant Growth-Promoting Escherichia coli USML2

2017 ◽  
Vol 5 (19) ◽  
Author(s):  
Munirah Tharek ◽  
Kee-Shin Sim ◽  
Dzulaikha Khairuddin ◽  
Ghazali Amir Hamzah ◽  
Nazalan Najimudin
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Elaeis Guineensis ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Circular Chromosome ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Leaf Tissues ◽  
Growth Promoting

ABSTRACT Escherichia coli strain USML2 was originally isolated from the inner leaf tissues of surface-sterilized phytopathogenic-free oil palm (Elaeis guineensis Jacq.). We present here the whole-genome sequence of this plant-endophytic strain. The genome consists of a single circular chromosome of 4,502,758 bp, 4,315 predicted coding sequences, and a G+C content of 50.8%.

scholarly journals Complete Genome Sequence of a Lytic T7-Like Phage, Escherichia Phage vB_EcoP-Ro45lw, Isolated from Nonfecal Compost Samples

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Yen-Te Liao ◽  
Fang Liu ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lytic Phage ◽  
Whole Genome ◽  
Content Type

Although isolation of the bacteriophages (phages) specific to Shiga toxin-producing Escherichia coli (STEC) is increasing, the number of those specific to STEC non-O157 strains, instead of STEC O157, with whole-genome sequencing characterization is relatively low. Here, we announce the complete genome sequence of a T7-like lytic phage against STEC O45.

scholarly journals Whole-Genome Sequence of Fluoroquinolone-Resistant Escherichia coli HUE1, Isolated in Hokkaido, Japan

2020 ◽  
Vol 9 (46) ◽  
Author(s):  
Montgomery Munby ◽  
Jumpei Fujiki ◽  
Kotaro Aoki ◽  
Chika Kawaguchi ◽  
Keisuke Nakamura ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Urinary Catheter ◽  
Whole Genome Sequence ◽  
Fluoroquinolone Resistance ◽  
Molecular Characteristics ◽  
Whole Genome ◽  
Short Read ◽  
Content Type

ABSTRACT We report the complete genome sequence of Escherichia coli strain HUE1, isolated from the urinary catheter of a female patient, showing fluoroquinolone resistance without quinolone resistance-determining region mutations. To facilitate the exploration of the molecular characteristics of HUE1, the whole genome was sequenced using long- and short-read platforms.

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