scholarly journals Distribution of Human Rotavirus G Types Circulating in Paris, France, during the 1997–1998 Epidemic: High Prevalence of Type G4

1999 ◽  
Vol 37 (7) ◽  
pp. 2373-2375 ◽  
Author(s):  
Elyanne Gault ◽  
Roxane Chikhi-Brachet ◽  
Sandrine Delon ◽  
Nathalie Schnepf ◽  
Laurence Albiges ◽  
...  
Keyword(s):  
Reverse Transcription ◽  
Acute Diarrhea ◽  
Children's Hospital ◽  
Reverse Transcription Pcr ◽  
Human Rotavirus ◽  
High Prevalence ◽  
Children’S Hospital ◽  
Group A ◽  
Stool Specimens

Group A human rotavirus G genotypes were determined by means of reverse transcription-PCR in 170 stool specimens from children with acute diarrhea admitted to a Paris children’s hospital during a 1-year survey (1997 to 1998). The isolates all belonged to types G1 to G4, with type G4 predominating (60%).

scholarly journals Evaluation of the ImmunoCardSTAT! Rotavirus Assay for Detection of Group A Rotavirus in Fecal Specimens

1999 ◽  
Vol 37 (6) ◽  
pp. 1977-1979 ◽  
Author(s):  
Penelope H. Dennehy ◽  
Michele Hartin ◽  
Sara M. Nelson ◽  
Shirley F. Reising
Keyword(s):  
Electron Microscopy ◽  
Positive Predictive Value ◽  
Reverse Transcription ◽  
Predictive Value ◽  
Rapid Detection ◽  
Group A Rotavirus ◽  
Reverse Transcription Pcr ◽  
Group A ◽  
Stool Specimens ◽  
Sensitivity Specificity

Rapid detection of group A rotavirus was performed by using ImmunoCardStat! Rotavirus (ICS-RV) (which uses immunogold-based, horizontal-flow membrane technology), two commercial enzyme immunoassays (Premier Rotaclone and TestPack Rotavirus), and electron microscopy. A total of 249 stool specimens collected from children with gastroenteritis between February and April 1997 were tested. After resolution of 19 of the 22 discordant results by reverse transcription-PCR for group A rotavirus, ICS-RV detected 125 positives while Rotaclone and TestPack detected 127 and 129 positives, respectively. The sensitivity, specificity, positive predictive value, and negative predictive value were 94.0, 100, 100, and 93.4% for ICS-RV; 95.5, 100, 100, and 95.0% for Rotaclone; and 97.0, 96.5, 97.0, and 96.5% for TestPack. ICS-RV was sensitive and specific and was relatively simple to perform and interpret.

scholarly journals VP4 and VP7 Genotyping by Reverse Transcription-PCR of Human Rotavirus in Mexican Children with Acute Diarrhea

2000 ◽  
Vol 38 (10) ◽  
pp. 3876-3878 ◽  
Author(s):  
Araceli Rodríguez Castillo ◽  
Andrés Velasco Villa ◽  
JoséErnesto Ramírez González ◽  
Elvira Mayén Pimentel ◽  
Martín Melo Munguía ◽  
...  
Keyword(s):  
Reverse Transcription ◽  
Acute Diarrhea ◽  
Mixed Infections ◽  
Reverse Transcription Pcr ◽  
Mexican Children ◽  
Human Rotavirus

Dual typing (VP4 and VP7) of rotavirus obtained from 257 Mexican children during three epidemiological seasons was performed by reverse transcription-PCR. The P1G1 genotype was the most prevalent (40%), followed by P1G3 (19%) and P2G2 (16%). Thirty-one specimens (12%) presented mixed infections, while some genotypes were not found. This is the first dual typing of isolates from diarrhea cases in Mexico.

scholarly journals Prevalence of Group A Rotavirus, Human Calicivirus, Astrovirus, and Adenovirus Type 40 and 41 Infections among Children with Acute Gastroenteritis in Dijon, France

1999 ◽  
Vol 37 (9) ◽  
pp. 3055-3058 ◽  
Author(s):  
F. Bon ◽  
P. Fascia ◽  
M. Dauvergne ◽  
D. Tenenbaum ◽  
H. Planson ◽  
...  
Keyword(s):  
Enzyme Immunoassay ◽  
Reverse Transcription ◽  
Acute Gastroenteritis ◽  
Adenovirus Type ◽  
Group A Rotavirus ◽  
Reverse Transcription Pcr ◽  
Group A Rotaviruses ◽  
Group A ◽  
Stool Specimens

Group A rotaviruses, human caliciviruses, astroviruses, and adenovirus types 40 and 41 were detected by enzyme immunoassay or reverse transcription-PCR in 61, 14, 6, and 3% of stool specimens from 414 children consulting for gastroenteritis between 1995 and 1998. These data highlight the importance of caliciviruses in infantile gastroenteritis. Among these, Norwalk-like viruses belonging to genogroup II were predominant.

Invasive Group A Streptococcal infections in children

2020 ◽  
Vol 16 ◽  
Author(s):  
Molla Imaduddin Ahmed ◽  
Rosalind V Saunders ◽  
Srini Bandi
Keyword(s):  
Early Diagnosis ◽  
Management Practices ◽  
Clinical Presentation ◽  
Streptococcal Infections ◽  
Invasive Group ◽  
Children's Hospital ◽  
Good Outcome ◽  
Children’S Hospital ◽  
Group A

: We reviewed the clinical presentation and management of children with Invasive group A streptococcal infections admitted to our tertiary Children’s Hospital in the last eight years. Our study highlighted the varied symptomatology and management practices in children with iGAS and showed that early diagnosis and prompt initiation of appropriate antibiotics for iGAS can help in resolution of symptoms and good outcome.

scholarly journals Molecular epidemiology and antimicrobial resistance of group A streptococcus recovered from patients in Beijing, China

2020 ◽  
Author(s):  
Hongxin Li ◽  
Lin Zhou ◽  
Yong Zhao ◽  
Lijuan Ma ◽  
Xiaoyan Liu ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
Group A Streptococcus ◽  
Resistance Rate ◽  
Gene Profiling ◽  
Epidemiological Surveillance ◽  
Erythromycin Resistance ◽  
Children's Hospital ◽  
Children’S Hospital ◽  
Group A ◽  
Epidemiological Characteristics

Abstract Background: Group A streptococcus (GAS) is an important human pathogen responsible for a broad range of infections. Epidemiological surveillance has been crucial to detect changes in the geographical and temporal variation of the disease pattern. The objective of this study was to investigate the molecular epidemiological characteristics and antimicrobial resistance of GAS isolates from patients in Children’s Hospital in Beijing. Methods: From 2016 to 2017, pharyngeal swab samples were collected from the outpatients in Children’s Hospital, Capital Institute of Pediatrics, who were diagnosed with scarlet fever. Antimicrobial susceptibility test was performed according to the distribution of conventional antibiotics and Clinical and Laboratory Standards Institute (CLSI) recommendations. The distribution of the macrolide-resistance genes ( ermB, ermA, mefA ), emm (M protein-coding gene) typing, and superantigens (SAg) gene profiling were examined by polymerase chain reaction (PCR). Results: A total of 297 GAS isolates were collected. The susceptibility of the isolates to penicillin, ceftriaxone, and levofloxacin was 100%. The resistance rate to erythromycin and clindamycin was 98.3% and 96.6%, respectively. The dominant emm types were emm12 (65.32%), emm1 (27.61%), emm75 (2.69%), and emm89 (1.35%). Of the 297 isolates, 290 (97.64%) carried the ermB gene, and 5 (1.68%) carried the mefA gene, while none carried the ermA gene. The most common superantigen genes identified from GAS isolates were smeZ (96.97%) , speC (92.59%), speG (91.58%), ssa (85.52%), speI (54.55%), speH (52.19%), and speA (34.34%). Isolates with the genotype emm1 possessed speA , speC , speG , speJ , speM , ssa , and smeZ , while emm12 possessed speC , speG , speH , speI , speM , ssa , and smeZ superantigens. Conclusions: The prevalent strain of GAS isolates in Beijing has a high resistance rate to macrolides; however, penicillin can still be the preferred antibiotic for treatment. Erythromycin resistance was predominantly mediated by ermB. The common emm types were emm12 and emm1. There was a correlation between emm and the superantigen gene. Thus, long-term monitoring and investigation of the emm types and superantigen genes of GAS prevalence are imperative.

scholarly journals Determination of Bovine Rotavirus G and P Serotypes in Italy by PCR

1999 ◽  
Vol 37 (12) ◽  
pp. 3879-3882 ◽  
Author(s):  
E. Falcone ◽  
M. Tarantino ◽  
L. Di Trani ◽  
P. Cordioli ◽  
A. Lavazza ◽  
...  
Keyword(s):  
Reverse Transcription ◽  
Clinical Signs ◽  
Specific Primers ◽  
Bovine Rotavirus ◽  
Reverse Transcription Pcr ◽  
Rotavirus Vaccines ◽  
Intestinal Contents ◽  
Group A

Determination of the G and P serotypes of group A bovine rotaviruses from 149 samples of feces or intestinal contents collected from calves showing clinical signs of neonatal diarrhea was performed by a nested reverse transcription-PCR typing assay. The G6 serotype was the most prevalent, accounting for viruses in 55.7% of the samples; viruses of the G10 and G8 serotypes were found in 34.9 and 4.7% of the samples, respectively. The virus in one sample (0.7%) was not classified due to concomitant infection with G6 and G8 strains, whereas viruses in six samples (4.0%) could not be characterized with any of the three G serotype-specific primers selected for the present study. When examined for their P-serotype specificities, viruses in 55 and 42.3% of the samples were characterized as P[11] and P[5], respectively, no P[1] serotype was identified, and viruses in 2.7% of the samples could not be classified due to multiple reactivity with both P[5]- and P[11]-specific primers. Various combinations of G and P serotypes were observed, the most frequent being G6,P[5] (38.3%), G10,P[11] (31.5%), and G6,P[11] (15.4%). The results of the present study, while contributing to a better understanding of the epidemiology of bovine rotaviruses in Italy, address the relevance of serotype specificity with regard to the constancy of the quality of bovine rotavirus vaccines under different field conditions.

Development of a real-time reverse transcription-PCR assay to detect and quantify group A rotavirus equine-like G3 strains

2021 ◽  
Author(s):  
Eric M. Katz ◽  
Mathew D. Esona ◽  
Rashi Gautam ◽  
Michael D. Bowen
Keyword(s):  
Viral Load ◽  
Real Time ◽  
Reverse Transcription ◽  
Dynamic Range ◽  
Limit Of Detection ◽  
Human Populations ◽  
Pcr Assay ◽  
Group A Rotavirus ◽  
Reverse Transcription Pcr ◽  
Group A

Since 2013, group A rotavirus strains characterized as novel DS-1-like inter-genogroup reassortant ‘equine-like G3’ strains have emerged and spread across five continents among human populations in at least 14 countries. Here we report a novel one-step TaqMan quantitative real-time reverse transcription-PCR assay developed to genotype and quantify the viral load for samples containing rotavirus equine-like G3 strains. Using a universal G forward primer and a newly designed reverse primer and TaqMan probe, we developed and validated an assay with a linear dynamic range of 2.3 × 10 9 – 227 copies per reaction and a limit of detection of 227 copies. The percent positive agreement, percent negative agreement, and precision of our assay were 100.00%, 99.63%, and 100.00%, respectively. This assay can simultaneously detect and quantify the viral load for samples containing DS-1-like inter-genogroup reassortant equine-like G3 strains with high sensitivity and specificity, faster turnaround time, and decreased cost and will be valuable for high-throughput screening of stool samples collected to monitor equine-like G3 strain prevalence and circulation among human populations throughout the world.

scholarly journals Reference Human Rotavirus A Genome Sequence from a Previously Vaccinated Child with Diarrhea in Nigeria

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
T. O. C. Faleye ◽  
U. E. George ◽  
C. Simsek ◽  
O. A. Arowolo ◽  
O. M. Adewumi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Reverse Transcription ◽  
Rapid Test ◽  
Etiologic Agent ◽  
Rt Pcr ◽  
Rotavirus A ◽  
Reverse Transcription Pcr ◽  
Human Rotavirus ◽  
A Genome ◽  
Genotype Constellation

In 2018, a 26-month-old girl, fully vaccinated with Rotarix in 2016, presented with fever, diarrhea, and vomiting. A rapid test showed that her feces contained rotavirus A (RVA). VP7 reverse transcription-PCR (RT-PCR) and Illumina sequencing showed that a G1P[8] strain with a Wa-like genotype constellation was the etiologic agent. This is the first near-complete RVA genome sequence from Nigeria.

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