scholarly journals Complete Genome Sequence of Erwinia amylovora Strain TS3128, a Korean Strain Isolated in an Asian Pear Orchard in 2015

2021 ◽  
Vol 10 (37) ◽  
Author(s):  
In-Jeong Kang ◽  
Duck Hwan Park ◽  
Young-Kee Lee ◽  
Sang-Wook Han ◽  
Youn-Sig Kwak ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fire Blight ◽  
Erwinia Amylovora ◽  
Korean Strain ◽  
Content Type ◽  
Asian Pear ◽  
Pacbio Rs Ii ◽  
Pear Orchard

Erwinia amylovora causes fire blight, a devastating disease of apples and pears. Here, we report the complete genome sequence and annotation of E. amylovora strain TS3128, which was isolated from Anseong, South Korea, where fire blight first occurred in 2015, using the PacBio RS II system.

scholarly journals Complete Genome Sequence of Fish Pathogen Flavobacterium columnare Strain B185, Originating from Finland

2019 ◽  
Vol 8 (49) ◽  
Author(s):  
Janne J. Ravantti ◽  
Elina Laanto ◽  
Petri Papponen ◽  
Lotta-Riina Sundberg
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Flavobacterium Columnare ◽  
Fish Pathogen ◽  
Sequencing Technology ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
Circular Genome

We report a complete genome sequence of a Finnish isolate of the fish pathogen Flavobacterium columnare. Using PacBio RS II sequencing technology, the complete circular genome of F. columnare strain B185 with 3,261,404 bp was obtained.

scholarly journals Complete Genome Sequence of the Bacterium Serratia marcescens SGAir0764, Isolated from Singapore Air

2018 ◽  
Vol 6 (27) ◽  
Author(s):  
Nicolas E. Gaultier ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Serratia Marcescens ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
Air Sample

Serratia marcescens strain SGAir0764 was isolated from a tropical air sample collected in Singapore. The complete genome, sequenced on the PacBio RS II platform, consists of one chromosome with 5.1 Mb and one plasmid with 76.4 kb.

scholarly journals Complete Genome Sequence of Lactobacillus plantarum Strain LQ80, Selected for Preparation of Fermented Liquid Feed for Pigs

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Naoko Moriya ◽  
Kazuma Nakano ◽  
Akino Shiroma ◽  
Misuzu Shinzato ◽  
Noriko Ashimine ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Circular Chromosome ◽  
Content Type ◽  
Liquid Feed ◽  
Pacbio Rs Ii ◽  
Single Circular Chromosome

ABSTRACT Lactobacillus plantarum LQ80 is a strain isolated from liquid feed for pigs. We determined the complete genome sequence of this strain using the PacBio RS II platform. LQ80 contained a single circular chromosome of 3,230,192 bp, with 44.66% G+C content and seven plasmids.

scholarly journals Complete Genome Sequence of the Plant Pathogen Erwinia amylovora Strain ATCC 49946

2010 ◽  
Vol 192 (7) ◽  
pp. 2020-2021 ◽  
Author(s):  
M. Sebaihia ◽  
A. M. Bocsanczy ◽  
B. S. Biehl ◽  
M. A. Quail ◽  
N. T. Perna ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Plant Pathogen ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fire Blight ◽  
Erwinia Amylovora ◽  
Strain Atcc ◽  
Important Disease

ABSTRACT Erwinia amylovora causes the economically important disease fire blight that affects rosaceous plants, especially pear and apple. Here we report the complete genome sequence and annotation of strain ATCC 49946. The analysis of the sequence and its comparison with sequenced genomes of closely related enterobacteria revealed signs of pathoadaptation to rosaceous hosts.

scholarly journals Complete Genome Sequence of Carotenoid-Producing Enterococcus gilvus CR1, Isolated from Raw Cow’s Milk

2018 ◽  
Vol 7 (10) ◽  
Author(s):  
Shun Ohki ◽  
Tatsuro Hagi ◽  
Kazuma Nakano ◽  
Akino Shiroma ◽  
Hinako Tamotsu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cow’S Milk ◽  
Content Type ◽  
Cow's Milk ◽  
Pacbio Rs Ii ◽  
Raw Cow’S Milk

Enterococcus gilvus CR1, isolated from raw cow’s milk, can produce carotenoids. The complete genome sequence of this strain was determined using the PacBio RS II platform.

scholarly journals Complete Genome Sequence of Leuconostoc kimchii Strain NKJ218, Isolated from Homemade Kimchi

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Ji Young Jung ◽  
Jin-Woo Jeong ◽  
Seung-Young Lee ◽  
Hyun Mi Jin ◽  
Hee Won Choi ◽  
...  
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whole Genome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
A Genome

ABSTRACT Leuconostoc kimchii strain NKJ218 was isolated from homemade kimchi in South Korea. The whole genome was sequenced using the PacBio RS II and Illumina NovoSeq 6000 platforms. Here, we report a genome sequence of strain NKJ218, which consists of a 1.9-Mbp chromosome and three plasmid contigs. A total of 2,005 coding sequences (CDS) were predicted, including 1,881 protein-coding sequences.

scholarly journals Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.

2010 ◽  
Vol 23 (4) ◽  
pp. 384-393 ◽  
Author(s):  
Theo H. M. Smits ◽  
Fabio Rezzonico ◽  
Tim Kamber ◽  
Jochen Blom ◽  
Alexander Goesmann ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fire Blight ◽  
Erwinia Amylovora ◽  
Control Strategies ◽  
Economic Importance ◽  
Secretion Systems ◽  
Evolutionary Aspects

Fire blight, caused by the enterobacterium Erwinia amylovora, is a devastating disease of rosaceous plants that has global economic importance for apple and pear production and trade. The complete genome of E. amylovora CFBP 1430 was sequenced, annotated, and compared with the genomes of other Erwinia spp. Several singleton and shared features of the E. amylovora CFBP 1430 genome were identified that offer a first view into evolutionary aspects within the genus Erwinia. Comparative genomics identified or clarified virulence and fitness determinants and secretion systems. Novel insights revealed in the genome of E. amylovora CFBP 1430 hold potential for exploitation to improve the design of more effective fire blight control strategies.

scholarly journals Complete Genome Sequence of Petrimonas sp. Strain IBARAKI, Assembled from the Metagenome Data of a Culture Containing Dehalococcoides spp.

2018 ◽  
Vol 6 (18) ◽  
pp. e00384-18 ◽  
Author(s):  
Kentaro Ikegami ◽  
Yuto Aita ◽  
Akino Shiroma ◽  
Makiko Shimoji ◽  
Hinako Tamotsu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Circular Chromosome ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
Single Circular Chromosome

ABSTRACT The complete genome sequence of Petrimonas sp. strain IBARAKI in a Dehalococcoides-containing culture was determined using the PacBio RS II platform. The genome is a single circular chromosome of 3,693,233 nucleotides (nt), with a GC content of 44%. This is the first genome sequence of a Petrimonas species.

scholarly journals Complete Genome Sequence of the Fire Blight Pathogen Strain Erwinia amylovora Ea1189

2020 ◽  
Vol 33 (11) ◽  
pp. 1277-1279 ◽  
Author(s):  
Menghao Yu ◽  
Jugpreet Singh ◽  
Awais Khan ◽  
George W. Sundin ◽  
Youfu Zhao
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fire Blight ◽  
Molecular Mechanisms ◽  
Erwinia Amylovora ◽  
De Novo ◽  
The United States ◽  
Bacterial Disease ◽  
Circular Chromosome

Erwinia amylovora causes fire blight, the most devastating bacterial disease of apples and pears in the United States and worldwide. The model strain E. amylovora Ea1189 has been extensively used to understand bacterial pathogenesis and molecular mechanisms of bacterial-plant interactions. In this work, we sequenced and assembled the de novo genome of Ea1189, using a combination of long Oxford Nanopore Technologies and short Illumina sequence reads. A complete gapless genome assembly of Ea1189 consists of a 3,797,741-bp circular chromosome and a 28,259-bp plasmid with 3,472 predicted genes, including 78 transfer RNAs, 22 ribosomal RNAs, and 20 noncoding RNAs. A comparison of the Ea1189 genome to previously sequenced E. amylovora complete genomes showed 99.94 to 99.97% sequence similarity with 314 to 946 single nucleotide polymorphisms. We believe that the availability of the complete genome sequence of strain Ea1189 will further support studies to understand evolution, diversity and structural variations of Erwinia strains, as well as the molecular basis of E. amylovora pathogenesis and its interactions with host plants, thus facilitating the development of effective management strategies for this important disease.

scholarly journals First Report on the Complete Genome Sequence of Lactobacillus crustorum MN047, a Potent Probiotic Strain Isolated from Koumiss in China

2017 ◽  
Vol 5 (12) ◽  
Author(s):  
Lanhua Yi ◽  
Xing Guo ◽  
Lian Liu ◽  
Chunge Shao ◽  
Xin Lü
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Probiotic Strain ◽  
Illumina Hiseq ◽  
Content Type ◽  
First Report ◽  
Pacbio Rs Ii

ABSTRACT The complete genome sequence of Lactobacillus crustorum deciphered by PacBio RS II and Illumina HiSeq 4000 sequencing was first reported with one chromosome and two plasmids. Sequence analysis of L. crustorum MN047 showed probiotic characteristics.

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