scholarly journals Draft Genome Sequence of Janthinobacterium sp. Strain SLB01, Isolated from the Diseased Sponge Lubomirskia baicalensis

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Ivan S. Petrushin ◽  
Sergei I. Belikov ◽  
Lubov I. Chernogor
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Janthinobacterium Lividum ◽  
Lubomirskia Baicalensis ◽  
Genes Encoding ◽  
Psychrotolerant Bacterium

The draft genome sequence of Janthinobacterium sp. strain SLB01, a violacein-producing psychrotolerant bacterium isolated from the diseased sponge Lubomirskia baicalensis, was determined. We identified five genes encoding VioA, VioB, VioC, VioD, and VioE proteins related to violacein biosynthesis that were like those identified in published Janthinobacterium lividum strains MTR and RIT308.

scholarly journals Draft Genome Sequence of the Chitin-Degrading Psychrotolerant Bacterium Pedobacter jejuensis TN23, Isolated from Antarctic Soil

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Ahnna Cho ◽  
Yong-Joon Cho ◽  
Ok-Sun Kim
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Antarctic Soil ◽  
Coding Sequences ◽  
Content Type ◽  
Terra Nova Bay ◽  
Victoria Land ◽  
Psychrotolerant Bacterium

Pedobacter jejuensis TN23 was isolated from soil from Terra Nova Bay, Victoria Land, Antarctica. The assembled draft genome size is 4,795,808 bp, and it contains a total of 4,095 genes with 3,970 coding sequences, including genes putatively involved in the degradation of chitin.

scholarly journals Draft Genome Sequence of Multidrug-Resistant Proteus mirabilis CKTH01, Isolated from Raw Chicken Meat

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Supatra Areekit ◽  
Nuttida Thongpramul ◽  
Wariya Yamprayoonswat ◽  
Watthanachai Jumpathong ◽  
Satapanawat Sittihan ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Proteus Mirabilis ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Chicken Meat ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Multidrug Efflux Pumps ◽  
Genes Encoding ◽  
Antibiotic Resistant Bacterium

Proteus mirabilis CKTH01 is a pathogenic bacterium isolated from raw chicken meat. The genome sequence of P. mirabilis CKTH01 contains genes encoding multidrug efflux pumps, which are the virulence factors of the antibiotic-resistant bacterium. This 3.98-Mb draft genome sequence of P. mirabilis CKTH01 will contribute to the understanding of the distribution of multidrug-resistant P. mirabilis in raw chicken meat at the open markets.

scholarly journals Draft Genome Sequence of Phenol-Degrading Variovorax boronicumulans Strain HAB-30

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Fatma Azwani Abdul Aziz ◽  
Kenshi Suzuki ◽  
Ryota Moriuchi ◽  
Hideo Dohra ◽  
Yosuke Tashiro ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Metabolic Pathways ◽  
Chemostat Culture ◽  
Phenol Degradation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Degradation Pathways ◽  
Content Type ◽  
Genes Encoding

We report the draft genome sequence of Variovorax boronicumulans strain HAB-30, which was isolated from a phenol-degrading chemostat culture. This strain contains genes encoding a multicomponent type of phenol hydroxylase, with degradation pathways for catechol and other aromatic compounds. The genome sequence will be useful for understanding the metabolic pathways involved in phenol degradation.

scholarly journals Draft Genome Sequence of Clostridium tagluense Strain A121T, Isolated from a Permafrost Core in the Canadian High Arctic

2019 ◽  
Vol 8 (5) ◽  
Author(s):  
Takumi Murakami ◽  
Hiroshi Mori ◽  
Viktoria A. Shcherbakova ◽  
Yoshitaka Yoshimura ◽  
Takahiro Segawa
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
High Arctic ◽  
Draft Genome Sequence ◽  
Strictly Anaerobic ◽  
Canadian High Arctic ◽  
Gram Positive ◽  
Content Type ◽  
Psychrotolerant Bacterium

Clostridium tagluense strain A121T was isolated from a permafrost core in the Canadian High Arctic. This endospore-forming strain is a strictly anaerobic, Gram-positive, and psychrotolerant bacterium.

scholarly journals Draft Genome Sequence of the Psychrotolerant Bacterium Kurthia sibirica ATCC 49154T

2018 ◽  
Vol 7 (5) ◽  
Author(s):  
Abigail E. Goen ◽  
Tyler Silverwood ◽  
Aria Underriner ◽  
Ariel M. Trachtenberg ◽  
Carolyn Kelley ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Eastern Siberia ◽  
Gram Positive ◽  
Content Type ◽  
Intestinal Contents ◽  
Psychrotolerant Bacterium

The aerobic, Gram-positive, psychrotolerant bacterium Kurthia sibirica was first isolated from the stomach and intestinal contents of the Magadan mammoth recovered from the permafrost in eastern Siberia in 1977. K. sibirica was sequenced, and the predicted genome size is 3,496,665 bp, with 36.42% G+C content.

scholarly journals Draft Genome Sequence of Janthinobacterium lividum ID1246, Isolated from a Rainbow Trout Hatchery Biofilm

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Todd Testerman ◽  
Stephen R. Reichley ◽  
Stacy King ◽  
Joerg Graf
Keyword(s):  
Rainbow Trout ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Antimicrobial Compounds ◽  
Biosynthetic Gene ◽  
Biosynthetic Gene Clusters ◽  
Content Type ◽  
Janthinobacterium Lividum

We present a draft genome sequence of Janthinobacterium lividum strain ID1246, isolated from within a rainbow trout hatchery raceway. Janthinobacterium spp. are well-known producers of antimicrobial compounds. Due to the unique isolation source, this genome may yield novel biosynthetic gene clusters.

scholarly journals Draft Genome Sequence ofKomagataeibacter maltacetiLMG 1529T, a Vinegar-Producing Acetic Acid Bacterium Isolated from Malt Vinegar Brewery Acetifiers

2018 ◽  
Vol 6 (16) ◽  
pp. e00330-18 ◽  
Author(s):  
Qingyang Zhang ◽  
Anja Poehlein ◽  
Jacqueline Hollensteiner ◽  
Rolf Daniel
Keyword(s):  
Acetic Acid ◽  
Genome Sequence ◽  
Draft Genome ◽  
Acetic Acid Bacterium ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Protein Encoding ◽  
Genes Encoding ◽  
Encoding Genes

ABSTRACTWe present the genome sequence ofKomagataeibacter maltacetiLMG 1529T, which is a vinegar-producing acetic acid bacterium. The draft genome sequence consists of 3.6 Mb and contains 3,225 predicted protein-encoding genes. In addition, 53 genes encoding potential oxidoreductases were identified.

scholarly journals Draft Genome Sequence of Vibrio parahaemolyticus Strain PH1339, Which Causes Acute Hepatopancreatic Necrosis Disease in Shrimp in the Philippines

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Sarah Mae U. Penir ◽  
Leobert D. dela Pena ◽  
Nikko Alvin R. Cabillon ◽  
Angela Denise P. Bilbao ◽  
Edgar C. Amar ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Vibrio Parahaemolyticus ◽  
Draft Genome ◽  
The Philippines ◽  
Draft Genome Sequence ◽  
Penaeus Vannamei ◽  
Parahaemolyticus Strain ◽  
Content Type ◽  
Genes Encoding ◽  
Acute Hepatopancreatic Necrosis Disease

We report the first draft genome sequence of an acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio parahaemolyticus strain isolated from a Penaeus vannamei sample from the Philippines. The strain carries the genes encoding the Pir-like toxin pair PirAvp and PirBvp.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of a Vibrio harveyi Strain Associated with Vibriosis in Pacific White Shrimp (Litopenaeus vannamei)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Emille Moreno ◽  
Marci Parks ◽  
Lee J. Pinnell ◽  
James J. Tallman ◽  
Jeffrey W. Turner
Keyword(s):  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
Vibrio Harveyi ◽  
Draft Genome ◽  
Penaeid Shrimp ◽  
Pacific White Shrimp ◽  
Draft Genome Sequence ◽  
White Shrimp ◽  
Content Type ◽  
Future Studies

ABSTRACT Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.

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