scholarly journals Whole-Genome Sequence of Oryctes rhinoceros Nudivirus from Riau Province, Indonesia

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Yudistira Wahyu Kurnia ◽  
Zulfikar Achmad Tanjung ◽  
Condro Utomo ◽  
Mohammad Naim ◽  
Elizabeth Caroline Situmorang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Open Reading Frames ◽  
Whole Genome Sequence ◽  
Dna Virus ◽  
Content Type ◽  
Oryctes Rhinoceros ◽  
Double Stranded Dna ◽  
The Family ◽  
Total Dna ◽  
Reading Frames

A double-stranded DNA virus, Oryctes rhinoceros nudivirus (OrNV), was detected in the total DNA of diseased larvae of O. rhinoceros in Riau Province, Indonesia. The complete genome sequence was 124,926 bp long and encodes 123 open reading frames (ORFs). This strain belongs to the family Nudiviridae and was designated LiboV.

scholarly journals Genome Sequence of the Broad-Host-Range Pseudomonas Phage Φ-S1

2012 ◽  
Vol 86 (18) ◽  
pp. 10239-10239 ◽  
Author(s):  
Sanna Sillankorva ◽  
Andrew M. Kropinski ◽  
Joana Azeredo
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Open Reading Frames ◽  
Broad Host Range ◽  
Content Type ◽  
Double Stranded Dna ◽  
The Family ◽  
Reading Frames

The broad-host-range lyticPseudomonasphage Φ-S1 possess a 40,192 bp double-stranded DNA (dsDNA) genome of 47 open reading frames (ORFs) and belongs to the familyPodoviridae, subfamilyAutographivirinae, genusT7likevirus.

scholarly journals Draft Whole-Genome Sequence of “Candidatus Liberibacter asiaticus” Strain TX1712 from Citrus in Texas

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
W. Cai ◽  
Z. Yan ◽  
J. Rascoe ◽  
M. J. Stulberg
Keyword(s):  
Genome Sequence ◽  
Reference Genome ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Whole Genome Sequence ◽  
Candidatus Liberibacter Asiaticus ◽  
Content Type ◽  
Candidatus Liberibacter ◽  
Liberibacter Asiaticus ◽  
Reading Frames

The draft genome sequence of “Candidatus Liberibacter asiaticus” strain TX1712, obtained from a Texas citrus tree, is reported here. Strain TX1712 has a draft genome size of 1,203,333 bp, a G+C content of 36.4%, 1,230 predicted open reading frames, and 41 RNAs and comprises 97.4% of the psy62 reference genome.

scholarly journals Complete Genome Sequence of the Lytic Bacteriophage Phab24, Which Infects Clinical Strains of the Nosocomial Pathogen Acinetobacter baumannii

2021 ◽  
Vol 10 (40) ◽  
Author(s):  
Belinda Loh ◽  
Xiaoqing Wang ◽  
Xiaoting Hua ◽  
Hou Wei Chook ◽  
Long Ma ◽  
...  
Keyword(s):  
Acinetobacter Baumannii ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Lytic Bacteriophage ◽  
Nosocomial Pathogen ◽  
Content Type ◽  
Double Stranded Dna ◽  
Reading Frames

Phab24 was isolated from river water in Zhejiang Province, China, and exhibits lytic activity against clinical isolates of the nosocomial pathogen Acinetobacter baumannii (X. Wang, B. Loh, Y. Yu, X. Hua, S. Leptihn, bioRxiv, 2021, https://doi.org/10.1101/2021.07.23.453473 ). The bacteriophage belongs to the Myoviridae family and has a double-stranded DNA (dsDNA) genome sequence that is 93,604 bp long, containing 172 open reading frames (ORFs).

scholarly journals De Novo Whole-Genome Sequence of Xylella fastidiosa subsp. multiplex Strain BB01 Isolated from a Blueberry in Georgia, USA

2017 ◽  
Vol 5 (6) ◽  
Author(s):  
Christopher Van Horn ◽  
Chung-Jan Chang ◽  
Jianchi Chen
Keyword(s):  
Genome Sequence ◽  
De Novo ◽  
Xylella Fastidiosa ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Rna Genes ◽  
Reading Frames

ABSTRACT This study reports a de novo-assembled draft genome sequence of Xylella fastidiosa subsp. multiplex strain BB01 causing blueberry bacterial leaf scorch in Georgia, USA. The BB01 genome is 2,517,579 bp, with a G+C content of 51.8%, 2,943 open reading frames (ORFs), and 48 RNA genes.

scholarly journals Complete Genome Sequence of vB_EcoP_PR_Kaz2018, a T7-Like Bacteriophage

2019 ◽  
Vol 8 (49) ◽  
Author(s):  
Madina S. Alexyuk ◽  
Andrey P. Bogoyavlenskiy ◽  
Pavel G. Alexyuk ◽  
Yergali S. Moldakhanov ◽  
Aizhan S. Turmagambetova ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Water Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Content Type ◽  
Double Stranded Dna ◽  
A Genome ◽  
Reading Frames

Here, we describe the complete genome sequence of the Escherichia coli bacteriophage vB_EcoP_PR_Kaz2018, isolated from a water sample. vB_EcoP_PR_Kaz2018 is a linear double-stranded DNA T7-like podophage with a genome of 39,704 bp containing 45 predicted open reading frames (ORFs).

scholarly journals Whole-Genome Sequence of Bacillus subtilis WS1A, a Promising Fish Probiotic Strain Isolated from Marine Sponge of the Bay of Bengal

2020 ◽  
Vol 9 (39) ◽  
Author(s):  
M. Mahbubur Rahman ◽  
Sulav Indra Paul ◽  
Tasmina Akter ◽  
Alfred Chin Yen Tay ◽  
M. Javed Foysal ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Probiotic Strain ◽  
Open Reading Frames ◽  
Whole Genome Sequence ◽  
Content Type ◽  
Aeromonas Veronii ◽  
Reading Frames

ABSTRACT This study reports the draft genome sequence of a promising fish probiotic, Bacillus subtilis strain WS1A, that possesses antimicrobial activity against Aeromonas veronii and suppressed motile Aeromonas septicemia in Labeo rohita. The de novo assembly resulted in an estimated chromosome size of 4,148,460 bp, with 4,288 open reading frames.

scholarly journals Draft Whole-Genome Sequence of a “Candidatus Liberibacter asiaticus” Strain from Yunnan, China

2019 ◽  
Vol 8 (3) ◽  
Author(s):  
Yanling Chen ◽  
Tao Li ◽  
Zheng Zheng ◽  
Meirong Xu ◽  
Xiaoling Deng
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Whole Genome Sequence ◽  
Content Type ◽  
A Genome ◽  
Candidatus Liberibacter ◽  
Liberibacter Asiaticus ◽  
Rna Genes ◽  
Reading Frames

The draft genome sequence of “Candidatus Liberibacter asiaticus” strain YNJS7C, isolated from a navel orange tree in Yunnan Province, China, is presented here. The YNJS7C strain has a genome size of 1,258,986 bp, with a G+C content of 36.6%, 1,174 predicted open reading frames, and 53 RNA genes.

scholarly journals Complete Genome Sequence of EtG, the First Phage Sequenced from Erwinia tracheiphila

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Andrés Andrade-Domínguez ◽  
Roberto Kolter ◽  
Lori R. Shapiro
Keyword(s):  
Genome Sequence ◽  
Bacterial Wilt ◽  
Complete Genome Sequence ◽  
Temperate Phage ◽  
Open Reading Frames ◽  
Cucumber Plant ◽  
Erwinia Tracheiphila ◽  
Content Type ◽  
Double Stranded Dna ◽  
Reading Frames

ABSTRACT Erwinia tracheiphila is the causal agent of bacterial wilt of cucurbits. Here, we report the genome sequence of the temperate phage EtG, which was isolated from an E. tracheiphila -infected cucumber plant. Phage EtG has a linear 30,413-bp double-stranded DNA genome with cohesive ends and 45 predicted open reading frames.

scholarly journals Genome Sequence of Klebsiella pneumoniae Bacteriophage PMBT1 Isolated from Raw Sewage

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Sabrina Koberg ◽  
Erik Brinks ◽  
Gregor Fiedler ◽  
Christina Hüsing ◽  
Gyu-Sung Cho ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Open Reading Frames ◽  
Beta Lactamase ◽  
High Similarity ◽  
Content Type ◽  
Extended Spectrum Beta Lactamase ◽  
Double Stranded Dna ◽  
Extended Spectrum ◽  
Reading Frames

ABSTRACT A bacteriophage virulent for extended-spectrum beta-lactamase (ESBL)-producing Klebsiella pneumoniae strain 182 was isolated from sewage. The double-stranded DNA (dsDNA) genome showed high similarity to the genomes of other Klebsiella pneumoniae phages. It comprises 175,206 bp with a mol% G+C content of 41.9 and contains 276 putative open reading frames (ORFs) and one tRNA.

scholarly journals Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, Belonging to the “phiKMV-Like Viruses”

2011 ◽  
Vol 77 (10) ◽  
pp. 3443-3450 ◽  
Author(s):  
Evelien M. Adriaenssens ◽  
Pieter-Jan Ceyssens ◽  
Vincent Dunon ◽  
Hans-Wolfgang Ackermann ◽  
Johan Van Vaerenbergh ◽  
...  
Keyword(s):  
Soil Samples ◽  
Pantoea Agglomerans ◽  
Open Reading Frames ◽  
Human Pathogen ◽  
Content Type ◽  
Host Diversity ◽  
Double Stranded Dna ◽  
Opportunistic Human Pathogen ◽  
Reading Frames

ABSTRACTPantoea agglomeransis a common soil bacterium used in the biocontrol of fungi and bacteria but is also an opportunistic human pathogen. It has been described extensively in this context, but knowledge of bacteriophages infecting this species is limited. Bacteriophages LIMEzero and LIMElight ofP. agglomeransare lytic phages, isolated from soil samples, belonging to thePodoviridaeand are the firstPantoeaphages of this family to be described. The double-stranded DNA (dsDNA) genomes (43,032 bp and 44,546 bp, respectively) encode 57 and 55 open reading frames (ORFs). Based on the presence of an RNA polymerase in their genomes and their overall genome architecture, these phages should be classified in the subfamily of theAutographivirinae, within the genus of the “phiKMV-like viruses.” Phylogenetic analysis of all the sequenced members of theAutographivirinaesupports the classification of phages LIMElight and LIMEzero as members of the “phiKMV-like viruses” and corroborates the subdivision into the different genera. These data expand the knowledge ofPantoeaphages and illustrate the wide host diversity of phages within the “phiKMV-like viruses.”

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