Cladistic analysis of Triticeae by means of Farris's "distance Wagner procedure"

1982 ◽  
Vol 60 (7) ◽  
pp. 1194-1199 ◽  
Author(s):  
Bernard R. Baum
Keyword(s):  
Phylogenetic Relationships ◽  
Dimensional Space ◽  
Genetic Relationships ◽  
Cladistic Analysis ◽  
Morphological Data ◽  
Two Dimensional ◽  
Dissimilarity Matrix

A dissimilarity matrix of genera of Triticeae, computed from the amalgamation of morphological data and genetic relationships in terms of successful crosses between the genera, has been subjected to Farris's distance Wagner procedure. One of the almost identical two Wagner networks obtained was superimposed on an ordination plot of the genera in two-dimensional space. This enabled representation of the multidimensionality of the phylogenetic relationships among the genera of this tribe. The findings and interpretation are discussed and compared with results on intergeneric relationships obtained by various cytogeneticists.

scholarly journals Phylogenetic relationships of Lecythidaceae: a cladistic analysis using rbcL sequence and morphological data

1997 ◽  
Vol 84 (4) ◽  
pp. 530-540 ◽  
Author(s):  
Cynthia M. Morton ◽  
Scott A. Mori ◽  
Ghillean T. Prance ◽  
Ken G. Karol ◽  
Mark W. Chase
Keyword(s):  
Phylogenetic Relationships ◽  
Cladistic Analysis ◽  
Morphological Data ◽  
Rbcl Sequence

scholarly journals 229. A Novel ‘One Health’ Approach to Understanding the Relationship of Antimicrobial Resistance Characteristics Among Humans, Bovines, and Canines

2021 ◽  
Vol 8 (Supplement_1) ◽  
pp. S224-S225
Author(s):  
Laurel Legenza ◽  
John D Lee ◽  
Brooke J Olson ◽  
Song Gao ◽  
Kyle McNair ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
Dimensionality Reduction ◽  
One Health ◽  
Dimensional Space ◽  
Genetic Relationships ◽  
Animal Health ◽  
Companion Animals ◽  
Two Dimensional ◽  
Study Region ◽  
Non Linear

Abstract Background ‘One Health’ recognizes the interconnectivity of humans with their production and companion animals, and the environment. Emergence and transmission of antimicrobial resistance (AMR) within and between these compartments is a recognized global threat that requires further understanding to design interventions protecting both human and animal health. In this study we identified resistance gene targets and clonotypes of Escherichia coli recovered from human, canine and bovine hosts and applied non-linear dimensionality reduction and visualization techniques to identify genetic relationships that may otherwise be unobservable within the data. Methods Non-duplicative E. coli isolates (N=3398; see Figure captions) were collected from humans, canines, bovines from the Midwest USA. We identified beta-lactamase gene targets for third-generation cephem multidrug resistant isolates and performed clonotype analysis on each. Uniform Manifold Approximation (UMAP) was used to create a two-dimensional “map” of the high dimensional space of the genetic results to identify similarities between both infecting and colonizing isolates, and between susceptible and resistant isolates in humans and animals in the study region (see Figure captions). Results The resulting “map” highlights similarities in: 1) genetic patterns of AMR among animals and humans, and 2) links between isolates that are infecting and colonizing in humans and canines (Figures 1-2). Our results suggest that there is strong genetic overlap linking human and animal patterns of AMR. UMAP also identified genetic segments that are unique to humans, distinct outliers, and suggest limited exchange among the neighboring counties (Figure 3). Figure 1. Distribution of infection and surveillance isolates shows distinct clusters and distribution within host species in the UMAP space. Each panel of the figure shows the same UMAP space with the labeled species in color and the other points in grey as a reference. The UMAP space is a non-linear two-dimensional representation of the genetic information contained in the clonotype analysis. UMAP is a dimensionality reduction technique similar to principal component analysis (PCA), except that it uses a non-linear combination of the underlying dimensions, which highlights the local structure and grouping of the cases. For more details see: Diaz-Papkovich, A., Anderson-Trocmé, L., & Gravel, S. (2021). A review of UMAP in population genetics. Journal of Human Genetics, 66(1), 85–91. Infection isolates: no bovine isolates tested, canine n=190, human n=115. Surveillance isolates: bovine n=175, canine n=747, human n=2171. Figure 2. Distribution of resistant and susceptible isolates shows the resistant cases are distributed in small clusters surrounding a large cluster of predominantly susceptible cases. This figure plots the same cases on the same UMAP space as Figure 1. The only difference is the color that distinguishes between resistant and susceptible cases. Resistant isolates: bovine n=91, canine n=300; human n=238. Susceptible isolates: bovine n=84. canine=637, human n=2048. Figure 3. The proportion of cases from each cluster in four adjoining counties varies considerably. The dark bars show the proportion of cases falling into each cluster for each county. The light bars provide a reference point for interpreting the dark bars by showing the proportion of cases falling into each cluster across all four counties. When the dark bars exceed the light bars it indicates that the proportion of cases in that cluster exceeds that of the neighboring counties, such as Cluster 2 for Taylor county and Cluster 3 for Marathon county. All counties shown include a population of at least 20,000. These stipulations are in compliance with federal (HIPAA) guidelines. Conclusion The results support that UMAP is a valuable tool for visualizing genetic AMR links across species. Human-animal transmission is likely for disparate and common clonotypes. Disclosures All Authors: No reported disclosures

Phylogenetic Relationships in the Commelinaceae: I. A. Cladistic Analysis of Morphological Data

2000 ◽  
Vol 25 (4) ◽  
pp. 668 ◽  
Author(s):  
Timothy M. Evans ◽  
Robert B. Faden ◽  
Michael G. Simpson ◽  
Kenneth J. Sytsma
Keyword(s):  
Phylogenetic Relationships ◽  
Cladistic Analysis ◽  
Morphological Data

The origin and early diversification of birds

Paleobiology ◽  
1986 ◽  
Vol 12 (4) ◽  
pp. 383-399 ◽  
Author(s):  
Joel Cracraft
Keyword(s):  
Phylogenetic Relationships ◽  
Cladistic Analysis ◽  
Sister Group ◽  
Morphological Data ◽  
Phylogenetic Position ◽  
Pectoral Girdle ◽  
Avian Evolution ◽  
Theropod Dinosaurs ◽  
Early Diversification ◽  
Time Of Origin

Numerical cladistic analysis of 73 cranial and postcranial characters has resulted in a highly corroborated hypothesis describing the phylogenetic pattern of early avian evolution. Using “non-avian theropod” dinosaurs as a comparative outgroup and root for the tree, the analysis confirmed Archaeopteryx to be the sister-group of all remaining avian taxa, or Ornithurae. This latter taxon is subdivided into two lineages, the Hesperornithiformes and the Carinatae. The carinates, in turn, were also resolved into two sister-groups, the Ichthyornithiformes and the modern birds, or Neornithes. This paper provides morphological data corroborating the divergence of the two basal clades of the Neornithes: the Palaeognathae (tinamous and ratites) and Neognathae (all other modern birds). The phylogenetic relationships of four important Cretaceous taxa were also investigated, but these fossil taxa were too fragmentary to determine their phylogenetic position unambiguously. Alexornis and Ambiortus are both carinates, but their relationships cannot be resolved in greater detail. The relationships of the Enantiornithes may lie within the Carinatae or these two taxa may be sister-groups. Gobipteryx is a neornithine and possibly the sister-group of the Palaeognathae.This analysis indicates that major patterns of morphological change took place at the time of origin of the ancestors of the Ornithurae and the Carinatae. Ornithurine innovations included major changes throughout the skeleton, whereas those of the carinates, while substantial, were primarily restricted to the pectoral girdle and forelimb. The phylogenetic results, in conjunction with the known ages of fossil taxa, indicate that the early lineages of birds very likely arose in the Jurassic. The early cladistic events within the neornithine lineage are also more ancient than generally recognized, and may well extend back to the early Cretaceous.

An electrophoretic study of the phylogenetic relationships among four species of sticklebacks (Pisces: Gasterosteidae)

1984 ◽  
Vol 62 (11) ◽  
pp. 2313-2316 ◽  
Author(s):  
Jocelyn Hudon ◽  
Helga Guderley
Keyword(s):  
Phylogenetic Relationships ◽  
Gasterosteus Aculeatus ◽  
Genetic Relationships ◽  
Cladistic Analysis ◽  
Allozyme Variation ◽  
Congeneric Species ◽  
Phenetic Analysis ◽  
Pungitius Pungitius ◽  
Electrophoretic Study ◽  
Apeltes Quadracus

The genetic relationships between four species of sticklebacks, Gasterosteus aculeatus Linneaus form trachurus, Gasterosteus wheatlandi Putnam, Pungitius pungitius (Linneaus), and Apeltes quadracus (Mitchill) were estimated by a locus-by-locus analysis of interspecific allozyme variation as well as by a band-counting analysis of soluble proteins in muscle. The locus-by-locus data was analysed both by a qualitative cladistic analysis and by a quantitative phenetic analysis. Both the locus-by-locus analysis and the band-counting analysis generated phylogenies which concord with the previously established relationships among these species. Our analyses indicate that these species have diverged considerably with a genetic identity of only 0.37 between the two congeneric species.

On the Classification of Fractal and Non-Fractal Objects in Two-Dimensional Space

2020 ◽  
Vol 14 (6) ◽  
pp. 1232-1239
Author(s):  
P. M. Pustovoit ◽  
E. G. Yashina ◽  
K. A. Pshenichnyi ◽  
S. V. Grigoriev
Keyword(s):  
Dimensional Space ◽  
Two Dimensional

Political Cleavages and Political Parties

2018 ◽  
Author(s):  
Russell J. Dalton
Keyword(s):  
Political Parties ◽  
Dimensional Space ◽  
New Left ◽  
Party Systems ◽  
European Parliament ◽  
Two Dimensional ◽  
Far Right ◽  
Policy Positions ◽  
Cultural Policies ◽  
Policy Choices

This chapter uses the cleavage positions of Candidates to the European Parliament (CEPs) to as representative of their parties’ political positions. Three surveys of CEPs track the evolution of party supply in European party systems. In 1979 parties were primarily aligned along a Left–Right economic cleavage. Gradually new left and Green parties began to compete in elections and crystallized and represented liberal cultural policies. In recent decades new far-right parties arose to represent culturally conservative positions. The cross-cutting cultural cleavage has also prompted many of the established parties to alter their policy positions. In most multiparty systems, political parties now compete in a fully populated two-dimensional space. This increases the supply of policy choices for the voters. The analyses are based on the Candidates to the European Parliament Studies in 1979, 1994, and 2009.

scholarly journals Three-Dimensional Thematic Map Imaging of the Yacht Port on the Example of the Polish National Sailing Centre Marina in Gdańsk

2021 ◽  
Vol 11 (15) ◽  
pp. 7016
Author(s):  
Pawel S. Dabrowski ◽  
Cezary Specht ◽  
Mariusz Specht ◽  
Artur Makar
Keyword(s):  
Spatial Data ◽  
Convex Surface ◽  
Dimensional Space ◽  
Three Dimensional ◽  
Future Research ◽  
Two Dimensional ◽  
Thematic Maps ◽  
Research Directions ◽  
Future Research Directions ◽  
The Many

The theory of cartographic projections is a tool which can present the convex surface of the Earth on the plane. Of the many types of maps, thematic maps perform an important function due to the wide possibilities of adapting their content to current needs. The limitation of classic maps is their two-dimensional nature. In the era of rapidly growing methods of mass acquisition of spatial data, the use of flat images is often not enough to reveal the level of complexity of certain objects. In this case, it is necessary to use visualization in three-dimensional space. The motivation to conduct the study was the use of cartographic projections methods, spatial transformations, and the possibilities offered by thematic maps to create thematic three-dimensional map imaging (T3DMI). The authors presented a practical verification of the adopted methodology to create a T3DMI visualization of the marina of the National Sailing Centre of the Gdańsk University of Physical Education and Sport (Poland). The profiled characteristics of the object were used to emphasize the key elements of its function. The results confirmed the increase in the interpretative capabilities of the T3DMI method, relative to classic two-dimensional maps. Additionally, the study suggested future research directions of the presented solution.

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