scholarly journals An Efficient Middle Layer Platform for Medical Imaging Archives

2018 ◽  
Vol 2018 ◽  
pp. 1-12 ◽  
Author(s):  
Atilla Ergüzen ◽  
Erdal Erdal
Keyword(s):  
Medical Imaging ◽  
Medical Image ◽  
Programming Model ◽  
Middle Layer ◽  
Single Node ◽  
Actual Patient ◽  
Performance Requirements ◽  
Nosql Database ◽  
Hadoop Cluster ◽  
Image Archiving

Digital medical image usage is common in health services and clinics. These data have a vital importance for diagnosis and treatment; therefore, preservation, protection, and archiving of these data are a challenge. Rapidly growing file sizes differentiated data formats and increasing number of files constitute big data, which traditional systems do not have the capability to process and store these data. This study investigates an efficient middle layer platform based on Hadoop and MongoDB architecture using the state-of-the-art technologies in the literature. We have developed this system to improve the medical image compression method that we have developed before to create a middle layer platform that performs data compression and archiving operations. With this study, a platform using MapReduce programming model on Hadoop has been developed that can be scalable. MongoDB, a NoSQL database, has been used to satisfy performance requirements of the platform. A four-node Hadoop cluster has been built to evaluate the developed platform and execute distributed MapReduce algorithms. The actual patient medical images have been used to validate the performance of the platform. The processing of test images takes 15,599 seconds on a single node, but on the developed platform, this takes 8,153 seconds. Moreover, due to the medical imaging processing package used in the proposed method, the compression ratio values produced for the non-ROI image are between 92.12% and 97.84%. In conclusion, the proposed platform provides a cloud-based integrated solution to the medical image archiving problem.

scholarly journals Transforming a Local Medical Image Analysis for Running on a Hadoop Cluster

2017 ◽  
Vol 108 ◽  
pp. 1622-1631
Author(s):  
Marco Strutz ◽  
Hermann Heßling ◽  
Achim streit
Keyword(s):  
Image Analysis ◽  
Medical Image ◽  
Medical Image Analysis ◽  
Hadoop Cluster

scholarly journals Manycore Performance-Portability: Kokkos Multidimensional Array Library

2012 ◽  
Vol 20 (2) ◽  
pp. 89-114 ◽  
Author(s):  
H. Carter Edwards ◽  
Daniel Sunderland ◽  
Vicki Porter ◽  
Chris Amsler ◽  
Sam Mish
Keyword(s):  
Programming Model ◽  
Engineering Application ◽  
Data Access ◽  
Memory Space ◽  
Performance Requirements ◽  
Application Programming ◽  
Multidimensional Array ◽  
And Performance ◽  
Data Access Patterns ◽  
Access Patterns

Large, complex scientific and engineering application code have a significant investment in computational kernels to implement their mathematical models. Porting these computational kernels to the collection of modern manycore accelerator devices is a major challenge in that these devices have diverse programming models, application programming interfaces (APIs), and performance requirements. The Kokkos Array programming model provides library-based approach to implement computational kernels that are performance-portable to CPU-multicore and GPGPU accelerator devices. This programming model is based upon three fundamental concepts: (1) manycore compute devices each with its own memory space, (2) data parallel kernels and (3) multidimensional arrays. Kernel execution performance is, especially for NVIDIA® devices, extremely dependent on data access patterns. Optimal data access pattern can be different for different manycore devices – potentially leading to different implementations of computational kernels specialized for different devices. The Kokkos Array programming model supports performance-portable kernels by (1) separating data access patterns from computational kernels through a multidimensional array API and (2) introduce device-specific data access mappings when a kernel is compiled. An implementation of Kokkos Array is available through Trilinos [Trilinos website, http://trilinos.sandia.gov/, August 2011].

Research and Developments in Medical Image Reconstruction Methods and Its Applications

2017 ◽  
pp. 491-535
Author(s):  
Shailendra Tiwari ◽  
Rajeev Srivastava
Keyword(s):  
Computed Tomography ◽  
Image Reconstruction ◽  
Medical Imaging ◽  
Medical Image ◽  
Ct Scanner ◽  
Image Reconstruction Techniques ◽  
Reconstruction Methods ◽  
Dimensional Reconstruction ◽  
Development Technology ◽  
Medical Image Reconstruction

Image reconstruction from projection is the field that lays the foundation for Medical Imaging or Medical Image Processing. The rapid and proceeding progress in medical image reconstruction, and the related developments in analysis methods and computer-aided diagnosis, has promoted medical imaging into one of the most important sub-fields in scientific imaging. Computer technology has enabled tomographic and three-dimensional reconstruction of images, illustrating both anatomical features and physiological functioning, free from overlying structures. In this chapter, the authors share their opinions on the research and development in the field of Medical Image Reconstruction Techniques, Computed Tomography (CT), challenges and the impact of future technology developments in CT, Computed Tomography Metrology in industrial research & development, technology, and clinical performance of different CT-scanner generations used for cardiac imaging, such as Electron Beam CT (EBCT), single-slice CT, and Multi-Detector row CT (MDCT) with 4, 16, and 64 simultaneously acquired slices. The authors identify the limitations of current CT-scanners, indicate potential of improvement and discuss alternative system concepts such as CT with area detectors and Dual Source CT (DSCT), recent technology with a focus on generation and detection of X-rays, as well as image reconstruction are discussed. Furthermore, the chapter includes aspects of applications, dose exposure in computed tomography, and a brief overview on special CT developments. Since this chapter gives a review of the major accomplishments and future directions in this field, with emphasis on developments over the past 50 years, the interested reader is referred to recent literature on computed tomography including a detailed discussion of CT technology in the references section.

scholarly journals Gender imbalance in medical imaging datasets produces biased classifiers for computer-aided diagnosis

2020 ◽  
Vol 117 (23) ◽  
pp. 12592-12594 ◽  
Author(s):  
Agostina J. Larrazabal ◽  
Nicolás Nieto ◽  
Victoria Peterson ◽  
Diego H. Milone ◽  
Enzo Ferrante
Keyword(s):  
Medical Imaging ◽  
Medical Image ◽  
Computer Aided Diagnosis ◽  
Computer Assisted ◽  
Gender Imbalance ◽  
Gender Balance ◽  
Computer Aided ◽  
Medical Image Computing ◽  
Assisted Diagnosis ◽  
Aided Diagnosis

Artificial intelligence (AI) systems for computer-aided diagnosis and image-based screening are being adopted worldwide by medical institutions. In such a context, generating fair and unbiased classifiers becomes of paramount importance. The research community of medical image computing is making great efforts in developing more accurate algorithms to assist medical doctors in the difficult task of disease diagnosis. However, little attention is paid to the way databases are collected and how this may influence the performance of AI systems. Our study sheds light on the importance of gender balance in medical imaging datasets used to train AI systems for computer-assisted diagnosis. We provide empirical evidence supported by a large-scale study, based on three deep neural network architectures and two well-known publicly available X-ray image datasets used to diagnose various thoracic diseases under different gender imbalance conditions. We found a consistent decrease in performance for underrepresented genders when a minimum balance is not fulfilled. This raises the alarm for national agencies in charge of regulating and approving computer-assisted diagnosis systems, which should include explicit gender balance and diversity recommendations. We also establish an open problem for the academic medical image computing community which needs to be addressed by novel algorithms endowed with robustness to gender imbalance.

scholarly journals Effective Diagnosis and Treatment through Content-Based Medical Image Retrieval (CBMIR) by Using Artificial Intelligence

2019 ◽  
Vol 8 (4) ◽  
pp. 462 ◽  
Author(s):  
Muhammad Owais ◽  
Muhammad Arsalan ◽  
Jiho Choi ◽  
Kang Ryoung Park
Keyword(s):  
Artificial Intelligence ◽  
Medical Imaging ◽  
Image Retrieval ◽  
Medical Image ◽  
Medical Images ◽  
Diagnosis And Treatment ◽  
Imaging Modalities ◽  
Imaging Data ◽  
Medical Database ◽  
Medical Image Retrieval

Medical-image-based diagnosis is a tedious task‚ and small lesions in various medical images can be overlooked by medical experts due to the limited attention span of the human visual system, which can adversely affect medical treatment. However, this problem can be resolved by exploring similar cases in the previous medical database through an efficient content-based medical image retrieval (CBMIR) system. In the past few years, heterogeneous medical imaging databases have been growing rapidly with the advent of different types of medical imaging modalities. Recently, a medical doctor usually refers to various types of imaging modalities all together such as computed tomography (CT), magnetic resonance imaging (MRI), X-ray, and ultrasound, etc of various organs in order for the diagnosis and treatment of specific disease. Accurate classification and retrieval of multimodal medical imaging data is the key challenge for the CBMIR system. Most previous attempts use handcrafted features for medical image classification and retrieval, which show low performance for a massive collection of multimodal databases. Although there are a few previous studies on the use of deep features for classification, the number of classes is very small. To solve this problem, we propose the classification-based retrieval system of the multimodal medical images from various types of imaging modalities by using the technique of artificial intelligence, named as an enhanced residual network (ResNet). Experimental results with 12 databases including 50 classes demonstrate that the accuracy and F1.score by our method are respectively 81.51% and 82.42% which are higher than those by the previous method of CBMIR (the accuracy of 69.71% and F1.score of 69.63%).

Recent Advances in Medical Image Processing

2020 ◽  
pp. 1-14
Author(s):  
Zhen Huang ◽  
Qiang Li ◽  
Ju Lu ◽  
Junlin Feng ◽  
Jiajia Hu ◽  
...  
Keyword(s):  
Neural Network ◽  
Artificial Intelligence ◽  
Machine Learning ◽  
Image Processing ◽  
Medical Imaging ◽  
Medical Image ◽  
Medical Image Processing ◽  
Convolution Neural Network ◽  
Artificial Intelligence Technology ◽  
Deep Convolution Neural Network

<b><i>Background:</i></b> Application and development of the artificial intelligence technology have generated a profound impact in the field of medical imaging. It helps medical personnel to make an early and more accurate diagnosis. Recently, the deep convolution neural network is emerging as a principal machine learning method in computer vision and has received significant attention in medical imaging. <b><i>Key Message:</i></b> In this paper, we will review recent advances in artificial intelligence, machine learning, and deep convolution neural network, focusing on their applications in medical image processing. To illustrate with a concrete example, we discuss in detail the architecture of a convolution neural network through visualization to help understand its internal working mechanism. <b><i>Summary:</i></b> This review discusses several open questions, current trends, and critical challenges faced by medical image processing and artificial intelligence technology.

scholarly journals TheDynamopackage for tomography and subtomogram averaging: components forMATLAB, GPU computing and EC2 Amazon Web Services

2017 ◽  
Vol 73 (6) ◽  
pp. 478-487 ◽  
Author(s):  
Daniel Castaño-Díez
Keyword(s):  
Software Maintenance ◽  
Gpu Computing ◽  
Computing Time ◽  
Three Dimensional ◽  
Middle Layer ◽  
General Purpose ◽  
Single Node ◽  
Subtomogram Averaging ◽  
Particle Extraction ◽  
High Level

Dynamois a package for the processing of tomographic data. As a tool for subtomogram averaging, it includes different alignment and classification strategies. Furthermore, its data-management module allows experiments to be organized in groups of tomograms, while offering specialized three-dimensional tomographic browsers that facilitate visualization, location of regions of interest, modelling and particle extraction in complex geometries. Here, a technical description of the package is presented, focusing on its diverse strategies for optimizing computing performance.Dynamois built upon mbtools (middle layer toolbox), a general-purposeMATLABlibrary for object-oriented scientific programming specifically developed to underpinDynamobut usable as an independent tool. Its structure intertwines a flexibleMATLABcodebase with precompiled C++ functions that carry the burden of numerically intensive operations. The package can be delivered as a precompiled standalone ready for execution without aMATLABlicense. Multicore parallelization on a single node is directly inherited from the high-level parallelization engine provided forMATLAB, automatically imparting a balanced workload among the threads in computationally intense tasks such as alignment and classification, but also in logistic-oriented tasks such as tomogram binning and particle extraction.Dynamosupports the use of graphical processing units (GPUs), yielding considerable speedup factors both for nativeDynamoprocedures (such as the numerically intensive subtomogram alignment) and procedures defined by the user through itsMATLAB-based GPU library for three-dimensional operations. Cloud-based virtual computing environments supplied with a pre-installed version ofDynamocan be publicly accessed through the Amazon Elastic Compute Cloud (EC2), enabling users to rent GPU computing time on a pay-as-you-go basis, thus avoiding upfront investments in hardware and longterm software maintenance.

PRESENT CONDITION AND FUTURE OBSERVATIONOF MEDICAL IMAGE ARCHIVING

1991 ◽  
Vol 47 (11) ◽  
pp. 1969-1978
Author(s):  
MAKOTO KURANISHI ◽  
MAMORU NAKAMURA ◽  
SYOUSUKE KATO ◽  
HAZIME ITOH ◽  
HISASHI YOSHIDA
Keyword(s):  
Medical Image ◽  
Present Condition ◽  
Image Archiving
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