Review of the genus Odontophora (Nematoda: Axonolaimidae), with a key to valid species and description of Odontophora atrox sp. n. from the New Zealand coast

Nematology ◽  
2016 ◽  
Vol 18 (10) ◽  
pp. 1125-1139
Author(s):  
Daniel Leduc ◽  
Zeng Qi Zhao
Keyword(s):  
New Zealand ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Valid Species ◽  
Molecular Tools ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
The Family ◽  
Tail Tip ◽  
Globally Distributed

Odontophora is a globally distributed marine nematode genus common in intertidal and subtidal sediments. Odontophora is one of the most diverse genus of the family Axonolaimidae with over 30 valid species described to date; however, the last revision of the genus was made over four decades ago. In addition, limited molecular sequence data are available for the Axonolaimidae and relationships among axonolaimid genera have not yet been investigated using molecular tools. Here, an updated list of species and a key for the identification of all 34 valid species is provided, and preliminary analyses of phylogenetic relationships within the Axonolaimidae are conducted using SSU and D2-D3 of LSU molecular sequences. Odontophora atrox sp. n. is described from intertidal sediments of Wellington, North Island of New Zealand, and is characterised by cephalic setae 1.1-1.5 corresponding body diam. long, 12 subcephalic setae, eight of which are slightly shorter and four of which are markedly shorter than the cephalic setae, excretory pore located slightly posterior to the amphids, and nerve ring located at two-thirds to three-quarters of pharynx length from anterior. Males are characterised by weakly arcuate spicules and tapering gubernacular apophyses, 9-10 small tubular precloacal supplements, cloacal aperture flanked by two sets of heavily cuticularised and eversible spines, and two elongated laterodorsal setae near the tail tip. Preliminary analyses of phylogenetic relationships within the Axonolaimidae provide some support for the monophyly of Odontophora, but drawing more solid inferences about relationships within the Axonolaimidae will require more molecular sequence data of accurately (and verifiably) identified species.

Phylogenetic relationships among nassariid gastropods

2000 ◽  
Vol 74 (5) ◽  
pp. 839-852 ◽  
Author(s):  
D. M. Haasl
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Sister Group ◽  
Range Data ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
The Poor ◽  
The Family ◽  
Stratigraphic Position

Phylogenetic relationships within the neogastropod family Nassariidae are poorly understood as are relationships between the Nassariidae and other fossil and extant buccinid taxa. The poor resolution of nassariid and buccinoidean relationships is due to: 1) the complex distribution among these gastropods of characters commonly used in classification; 2) a number of Mesozoic and Paleogene genera whose relationships to extant buccinoidean lineages are poorly constrained; and 3) a lack of previous efforts to address these problems on a rigorous, phylogenetic basis.The results of a phylogenetic analysis of nassariid genera did not decisively support the monophyly of the family. The buccinid subfamily Photinae was an extant sister group to the Nassariinae in a phylogenetic analysis of extant taxa and on many cladograms from an analysis combining fossil and extant taxa. In addition, Buccitriton (representing the Paleogene Tritiaria group) was a sister taxon to the Nassariinae in all analyses in which it was included, regardless of the identity of the extant nassariine sister group. This suggests that the photines, which likely arose from a Tritiaria ancestor, are the closest living relatives to the Nassariinae. Many Paleogene fossil “buccinoid” taxa appear to be more distantly related to the Nassariinae and possibly to the rest of the nassariids as well. Stratigraphic range data combined with the results of this study suggest that the Nassariinae diversified rapidly in the early Miocene and achieved a cosmopolitan distribution early in their history. A largely Indo-Pacific subclade was consistently deeply-nested within the Nassariinae, suggesting that nassariines invaded the Indo-Pacific region most recently. The timing of this invasion is difficult to estimate but had occurred by the end of the Miocene. Further analyses using molecular sequence data, relative stratigraphic position, or focusing in more detail on the Paleogene taxa are required to resolve the identity of the sister group to the Nassariinae with greater confidence.

New replacement name for Anaperus Graff, 1911 (Acoelomorpha: Acoela: Convolutidae)

Zootaxa ◽  
2018 ◽  
Vol 4418 (5) ◽  
pp. 499 ◽  
Author(s):  
J. A. RIVAZ HERNÁNDEZ
Keyword(s):  
Type Species ◽  
Sequence Data ◽  
Valid Species ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Copulatory Apparatus ◽  
Incertae Sedis ◽  
The Family ◽  
Male Copulatory Apparatus

The acoel genus Anaperus was established by Graff in 1911 for Amphiscolops gardineri Graff, 1910, making Anaperus gardineri (Graff, 1910) its type species. Since then, six more valid species were described: A. tvaerminnensis (Luther, 1912); A. sulcatus Beklemischev, 1914; A. rubellus Westblad, 1945; A. biaculeatus Boguta, 1970; A. ornatus Beltagi, 2001; A. singularis Hooge & Smith, 2004. A seventh species, A. australis Westblad, 1952, is incertae sedis (Dörjes & Karling, 1975). The genus was placed to family Convolutidae Graff, 1905, until Dörjes (1968) erected the family Anaperidae on the basis of a distinctive male copulatory apparatus. Jondelius et al. (2011) returned it to Convolutidae on the basis of molecular–sequence data.

The status of Myriangiaceae (Dothideomycetes)

Phytotaxa ◽  
2014 ◽  
Vol 176 (1) ◽  
pp. 219 ◽  
Author(s):  
ASHA J. DISSANAYAKE ◽  
RUVISHIKA S. JAYAWARDENA ◽  
SARANYAPHAT BOONMEE ◽  
KASUN M. THAMBUGALA ◽  
QING TIAN ◽  
...  
Keyword(s):  
Sequence Data ◽  
Molecular Data ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
The Family ◽  
The Status ◽  
Sexual State ◽  
Morphological And Molecular Data ◽  
Asexual State ◽  
Molecular Characters

The family Myriangiaceae is relatively poorly known amongst the Dothideomycetes and includes genera which are saprobic, epiphytic and parasitic on the bark, leaves and branches of various plants. The family has not undergone any recent revision, however, molecular data has shown it to be a well-resolved family closely linked to Elsinoaceae in Myriangiales. Both morphological and molecular characters indicate that Elsinoaceae differs from Myriangiaceae. In Elsinoaceae, small numbers of asci form in locules in light coloured pseudostromata, which form typical scab-like blemishes on leaf or fruit surfaces. The coelomycetous, “Sphaceloma”-like asexual state of Elsinoaceae, form more frequently than the sexual state; conidiogenesis is phialidic and conidia are 1-celled and hyaline. In Myriangiaceae, locules with single asci are scattered in a superficial, coriaceous to sub-carbonaceous, black ascostromata and do not form scab-like blemishes. No asexual state is known. In this study, we revisit the family Myriangiaceae, and accept ten genera, providing descriptions and discussion on the generic types of Anhellia, Ascostratum, Butleria, Dictyocyclus, Diplotheca, Eurytheca, Hemimyriangium, Micularia, Myriangium and Zukaliopsis. The genera of Myriangiaceae are compared and contrasted. Myriangium duriaei is the type species of the family, while Diplotheca is similar and may possibly be congeneric. The placement of Anhellia in Myriangiaceae is supported by morphological and molecular data. Because of similarities with Myriangium, Ascostratum (A. insigne), Butleria (B. inaghatahani), Dictyocyclus (D. hydrangea), Eurytheca (E. trinitensis), Hemimyriangium (H. betulae), Micularia (M. merremiae) and Zukaliopsis (Z. amazonica) are placed in Myriangiaceae. Molecular sequence data from fresh collections is required to confirm the relationships and placement of the genera in this family.

scholarly journals Noteworthy record of the Ethiopian genet, Genetta abyssinica, (Carnivora, Viverridae) from Djibouti informs its phylogenetic position within Genetta

Mammalia ◽  
2019 ◽  
Vol 83 (2) ◽  
pp. 180-189 ◽  
Author(s):  
Adam W. Ferguson ◽  
Houssein R. Roble ◽  
Molly M. McDonough
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Alternative Hypothesis ◽  
Phylogenetic Analyses ◽  
Phylogenetic Position ◽  
Sister Relationship ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Molecular Phylogenetic ◽  
Relationship Of

AbstractThe molecular phylogeny of extant genets (Carnivora, Viverridae,Genetta) was generated using all species with the exception of the Ethiopian genetGenetta abyssinica. Herein, we provide the first molecular phylogenetic assessment ofG. abyssinicausing molecular sequence data from multiple mitochondrial genes generated from a recent record of this species from the Forêt du Day (the Day Forest) in Djibouti. This record represents the first verified museum specimen ofG. abyssinicacollected in over 60 years and the first specimen with a specific locality for the country of Djibouti. Multiple phylogenetic analyses revealed conflicting results as to the exact relationship ofG. abyssinicato otherGenettaspecies, providing statistical support for a sister relationship to all other extant genets for only a subset of mitochondrial analyses. Despite the inclusion of this species for the first time, phylogenetic relationships amongGenettaspecies remain unclear, with limited nodal support for many species. In addition to providing an alternative hypothesis of the phylogenetic relationships among extant genets, this recent record provides the first complete skeleton of this species to our knowledge and helps to shed light on the distribution and habitat use of this understudied African small carnivore.

Across Lydekker's Line - first report of mite harvestmen (Opiliones : Cyphophthalmi : Stylocellidae) from New Guinea

2007 ◽  
Vol 21 (3) ◽  
pp. 207 ◽  
Author(s):  
Ronald M. Clouse ◽  
Gonzalo Giribet
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
New Guinea ◽  
Single Male ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
The Family ◽  
Biogeographic Region ◽  
Molecular Phylogenetic ◽  
History Of

Opiliones (harvestmen) in the suborder Cyphophthalmi are not known to disperse across oceans and each family in the suborder is restricted to a clear biogeographic region. While undertaking a revisionary study of the South-east Asian family Stylocellidae, two collections of stylocellids from New Guinea were noted. This was a surprising find, since the island appears never to have had a land connection with Eurasia, where the rest of the family members are found. Here, 21 New Guinean specimens collected from the westernmost end of the island (Manokwari Province, Indonesia) are described and their relationships to other cyphophthalmids are analysed using molecular sequence data. The specimens represent three species, Stylocellus lydekkeri, sp. nov., S. novaguinea, sp. nov. and undescribed females of a probable third species, which are described and illustrated using scanning electron microscope and stereomicroscope photographs. Stylocellus novaguinea, sp. nov. is described from a single male and it was collected with a juvenile and the three females of the apparent third species. Molecular phylogenetic analyses indicate that the new species are indeed in the family Stylocellidae and they therefore reached western New Guinea by dispersing through Lydekker’s line – the easternmost limit of poor dispersers from Eurasia. The New Guinean species may indicate at least two episodes of oceanic dispersal by Cyphophthalmi, a phenomenon here described for the first time. Alternatively, the presence in New Guinea of poor dispersers from Eurasia may suggest novel hypotheses about the history of the island.

Phylogenetic relationships among Unionicola (Acari: Unionicolidae) mussel-mites of North America based on mitochondrial cytochrome oxidase I sequences

Zootaxa ◽  
2010 ◽  
Vol 2537 (1) ◽  
pp. 47 ◽  
Author(s):  
DALE D. EDWARDS ◽  
MALCOLM F. VIDRINE ◽  
BRIAN R. ERNSTING
Keyword(s):  
North America ◽  
Cytochrome Oxidase ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Bootstrap Support ◽  
Cox1 Gene ◽  
Symbiotic Association ◽  
Gene Trees ◽  
Molecular Sequence Data ◽  
Molecular Sequence

Water mites of the genus Unionicola Haldeman, 1842 are common symbionts of molluscs, living on the gills or mantle and foot of their hosts and using these tissues as sites of oviposition. Phylogenetic relationships among species that comprise the genus are poorly understood and what is known has been based on a limited number of morphological and life history characters or molecular sequence data using closely-related taxa. The present study uses sequence data from the cytochrome oxidase subunit I (cox1) gene (664 bp) to reconstruct evolutionary relationships among representative species of North American Unionicola from eight subgenera that occur in symbiotic association with freshwater mussels. Maximum parsimony and maximum likelihood analysis yielded trees with similar topologies, and most of the branches have moderate to high bootstrap support. The topologies of these gene trees are mostly congruent with a previously published morphologically-derived tree. Specifically, the gene trees support monophyly among mites from subgenera that occur in association with the gill tissues of host mussels. The molecular trees of Unionicola mites generated by this study must, however, be interpreted with caution, given that the analysis is based exclusively on Unionicola subgenera from North America. A more robust phylogeny of Unionicola mussel-mites will require the addition of molecular sequence data from taxa outside of North America.

scholarly journals Mitochondrial Genomes Provide Insights into the Phylogeny of Culicomorpha (Insecta: Diptera)

2019 ◽  
Vol 20 (3) ◽  
pp. 747 ◽  
Author(s):  
Xiao Zhang ◽  
Zehui Kang ◽  
Shuangmei Ding ◽  
Yuyu Wang ◽  
Chris Borkent ◽  
...  
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Sister Group ◽  
Monophyletic Group ◽  
Phylogenomic Analysis ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Genome Data ◽  
New Family ◽  
Mt Genome

Culicomorpha is a monophyletic group containing most bloodsucking lower dipterans, including many important vectors of pathogens. However, the higher-level phylogenetic relationships within Culicomorpha are largely unresolved, with multiple competing hypotheses based on molecular sequence data. Here we sequenced four nearly complete mitochondrial (mt) genomes representing four culicomorph families, and combined these new data with published mt genomes to reconstruct the phylogenetic relationships of all eight extant culicomorph families. We estimated phylogenies using four datasets and three methods. We also used four-cluster likelihood mapping to study potential incongruent topologies supported by the different datasets and phylogenetic questions generated by the previous studies. The results showed that a clade containing Ceratopogonidae, Thaumaleidae and Simuliidae was the sister group to all other Culicomorpha; in another clade, the Dixidae was basal to the remaining four families; Chaoboridae, Corethrellidae and Culicidae formed a monophyletic group and the Chironomidae was the sister group to this clade; Culicidae and Corethrellidae were sister groups in all trees. Our study provides novel mt genome data in Culicomorpha for three new family representatives, and the resulting mt phylogenomic analysis helps to resolve the phylogeny and taxonomy of Culicomorpha.

Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

Zootaxa ◽  
2019 ◽  
Vol 4642 (1) ◽  
pp. 1-79 ◽  
Author(s):  
JAMES WILDER ORR ◽  
INGRID SPIES ◽  
DUANE E. STEVENSON ◽  
GARY C. LONGO ◽  
YOSHIAKI KAI ◽  
...  
Keyword(s):  
Molecular Phylogenetics ◽  
Sequence Data ◽  
Morphological Characters ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Genome Wide ◽  
The Pacific ◽  
The Family ◽  
Genomic Analyses ◽  
Gene Coi

Phylogenetic relationships of snailfishes of the family Liparidae were analyzed on the basis of two sets of molecular sequence data: one from the mitochondrial DNA cytochrome c oxidase subunit one gene (COI) and another from restriction-site associated genome-wide sequences (RADseq). The analysis of COI sequence data from at least 122 species of 18 genera from the Pacific, Atlantic, and Southern oceans resulted in a moderately well-resolved phylogeny among the major clades, albeit with significant polytomy among central clades. Nectoliparis was the sister of all other members of the family, followed by Liparis. Liparis, Careproctus, and Paraliparis were paraphyletic. Liparis was recovered in two closely related clades, with L. fucensis sister of all other liparids except Nectoliparis, and both Careproctus and Paraliparis were each recovered among at least three widely separated clades. The RADseq analysis of 26 species of 11 genera from the eastern North Pacific strongly confirmed the overall results of the COI analysis, with the exception of the paraphyly of Liparis due to the absence of L. fucensis. Our results show that the pelvic disc has been independently lost multiple times and the pectoral-fin girdle has been independently reduced in multiple lineages. 

Systematics of Bulbostyla, a new subgenus of Sarcophaga Meigen, and change of status for Robackina Lopes (Diptera: Sarcophagidae)

Zootaxa ◽  
2010 ◽  
Vol 2553 (1) ◽  
pp. 35 ◽  
Author(s):  
MARJOLAINE GIROUX ◽  
TERRY A. WHEELER
Keyword(s):  
Phylogenetic Relationships ◽  
Type Species ◽  
New World ◽  
Sequence Data ◽  
Morphological Characters ◽  
Molecular Sequence Data ◽  
World Species ◽  
Molecular Sequence ◽  
New Subgenus

Sarcophaga (Bulbostyla) subgen. nov. is described as a new subgenus of Sarcophaga Meigen to accommodate some species previously assigned to the subgenus S. (Neobellieria) Blanchard. Sarcophaga (Bulbostyla) contains nine species: S. airosalis sp. nov., S. cadyi sp. nov. (type species), S. cuautla sp. nov., S. fattigina sp. nov., S. ironalis sp. nov., S. semimarginalis Hall, S. sternalis (Reinhard), S. subdiscalis Aldrich and S. yorkii Parker. All species are described and illustrated and a key to the species is provided. The species within the subgenus are morphologically uniform externally and are distinguished mostly on male genitalic characters. Phylogenetic relationships within Bulbostyla are unresolved based on morphological characters and will require consideration of additional characters, such as molecular sequence data. The genus-group taxon Robackina Lopes is removed from synonymy with the subgenus Sarcophaga (Neobellieria) and reinstated as a valid subgenus of Sarcophaga (stat. nov.) to accommodate the single New World species Sarcophaga triplasia Wulp. A lectotype is designated for S. triplasia. The subgenus and species are redescribed and illustrated.

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