Chylorhabditis epuraeae n. gen., n. sp. (Rhabditida: Rhabditidae) isolated from Epuraea (Haptoncus) ocularis Fairmaire collected from sap on the bark of Ulmus parvifolia Jacq. in Kyoto, Japan

Nematology ◽  
2020 ◽  
pp. 1-15
Author(s):  
Natsumi Kanzaki ◽  
Keiko Hamaguchi ◽  
Yuko Takeuchi-Kaneko
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
18S Ribosomal Rna ◽  
Rna Sequence ◽  
Ulmus Parvifolia ◽  
Female Tail ◽  
Biological Characters ◽  
A New Species

Summary A new rhabditid entomophilic nematode was isolated from adult Epuraea (Haptoncus) ocularis collected from brown to light brown sap on the trunk of Ulmus parvifolia in Kyoto, Japan. The typological characters of the species, anteriorly opened peloderan bursa with nine bursal rays with the first, fifth, and eighth pairs directed dorsally, very long and two-part spicule with broad tip, and elongate conical female tail, do not fit the current nominal rhabditid genera. While phylogenetic analyses based on the near-full-length small subunit (18S) ribosomal RNA sequence tentatively suggest that the species is the sister of Buetschlinema, the typological and biological characters of the new species clearly differ from that genus, and so a new species is described herein as Chylorhabditis epuraeae n. gen., n. sp.

Identification of the new species Comatricha macrospora and two other recently recorded species of Comatricha from China

Phytotaxa ◽  
2018 ◽  
Vol 374 (1) ◽  
pp. 71 ◽  
Author(s):  
BO ZHANG ◽  
SAIYU WANG ◽  
XIAOQI XU ◽  
TIANHAO LI ◽  
DAN DAI ◽  
...  
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Jiangxi Province ◽  
Scanning Electron Micrographs ◽  
Rna Sequences ◽  
Ribosomal Rna Sequences ◽  
First Time ◽  
A New Species

A new species (Comatricha macrospora) has been collected from the Changbai Mountain National Nature Reserve, Jilin Province, China. Comatricha macrospora has smaller sporocarps and larger spores (about 15–18 μm in diameter) than other species of Comatricha as well as a persistent peridium at the base of the sporotheca. In addition, two newly recorded species of Comatricha—C. tenerrima (M.A. Curtis) G. Lister and C. afroalpina Rammeloo—have been documented in China for the first time, based on material collected from northeast China and the campus of East China Normal University, Fuzhou City, Jiangxi Province. Comatricha tenerrima is characterised by fusiform long-stalked sporocarps and warted pinkish brown spores (about 7–8 μm in diameter)., whereas C. afroalpina occurs on rotting logs and has spores marked by larger warts with an irregular reticulation at their base. Descriptions and scanning electron micrographs for these members of the genus Comatricha are provided. Phylogenetic analyses, based on small subunit ribosomal RNA sequences (SSUrRNA) of Comatricha and related genera, were carried out using Bayesian inference. These analyses confirmed the placement of the new species in the genus Comatricha.

A new species of the genus Eudorylaimus Andrássy, 1959 (Nematoda: (Dorylaimida: Qudsianematidae) associated with Picea crassifolia in China

Zootaxa ◽  
2018 ◽  
Vol 4526 (4) ◽  
pp. 576
Author(s):  
WEN-JIA WU ◽  
CHUN-LING XU ◽  
DONG-WEI WANG ◽  
HUI XIE
Keyword(s):  
New Species ◽  
Rhizosphere Soil ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Neck Length ◽  
Picea Crassifolia ◽  
Body Diameter ◽  
Small Subunit Rdna ◽  
C Value ◽  
A New Species

A new species, Eudorylaimus piceae n. sp., extracted from rhizosphere soil of Picea crassifolia from Inner Mongolia, China was identified. The new species is characterized by these combined characters: body length of 1.03–1.27 mm; lip region distinctly offset; odontostyle 20–22 μm and 1.1–1.4 times the lip region diameter in length; odontophore 1.1–1.2 times the odontostyle length; basal expansion of pharynx occupying 42%–50.5% of the total neck length; genital system didelphic-amphidelphic; vulva transverse; vagina extending inwards 32%–43%; V value averaging more than 60; pars refringens vaginae with two trapezoidal sclerotizations and pars distalis vaginae weakly sclerotized; prerectum 72–107 μm long, 2.3–3.3 times the anal body diameter, and rectum 1–1.6 times the anal body diameter in length; tail conoid and bent ventrally, c’ value 1.5–1.8 and males unknown. Phylogenetic analyses based on sequences of 18S small subunit rDNA and the D2-D3 expansion region of 28S rDNA are presented. 

scholarly journals Morphology, genetic characterization and molecular phylogeny of pinworm Skrjabinema longicaudatum n. sp. (Oxyurida: Oxyuridae) from the endangered Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae)

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Yi-Fan Cao ◽  
Hui-Xia Chen ◽  
Yang Li ◽  
Dang-Wei Zhou ◽  
Shi-Long Chen ◽  
...  
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Sister Relationship ◽  
Tibetan Antelope ◽  
A New Species

Abstract Background The Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae) is an endangered species of mammal endemic to the Qinghai-Tibetan Plateau. Parasites and parasitic diseases are considered to be important threats in the conservation of the Tibetan antelope. However, our present knowledge of the composition of the parasites of the Tibetan antelope remains limited. Methods Large numbers of nematode parasites were collected from a dead Tibetan antelope. The morphology of these nematode specimens was observed using light and scanning electron microscopy. The nuclear and mitochondrial DNA sequences, i.e. small subunit ribosomal DNA (18S), large subunit ribosomal DNA (28S), internal transcribed spacer (ITS) and cytochrome c oxidase subunit 1 (cox1), were amplified and sequenced for molecular identification. Moreover, phylogenetic analyses were performed using maximum likelihood (ML) inference based on 28S and 18S + 28S + cox1 sequence data, respectively, in order to clarify the systematic status of these nematodes. Results Integrated morphological and genetic evidence reveals these nematode specimens to be a new species of pinworm Skrjabinema longicaudatum (Oxyurida: Oxyuridae). There was no intraspecific nucleotide variation between different individuals of S. longicaudatum n. sp. in the partial 18S, 28S, ITS and cox1 sequences. However, a high level of nucleotide divergence was revealed between the new species and its congeners in 28S (8.36%) and ITS (20.3–23.7%) regions, respectively. Molecular phylogenetic results suggest that the genus Skrjabinema should belong to the subfamily Oxyurinae (Oxyuroidea: Oxyuridae), instead of the subfamily Syphaciidae or Skrjabinemiinae in the traditional classification, as it formed a sister relationship to the genus Oxyuris. Conclusions A new species of pinworm Skrjabinema longicaudatum n. sp. (Oxyurida: Oxyuridae) is described. Skrjabinema longicaudatum n. sp. represents the first species of Oxyurida (pinworm) and the fourth nematode species reported from the Tibetan antelope. Our results contribute to the knowledge of the species diversity of parasites from the Tibetan antelope, and clarify the systematic position of the genus Skrjabinema.

Morphological and phylogenetic analyses reveal a new species of Fistulina (Fistulinaceae, Agaricales) from Australia

Phytotaxa ◽  
2019 ◽  
Vol 420 (3) ◽  
pp. 233-240
Author(s):  
YI-FEI SUN ◽  
SHUN LIU ◽  
BAO-KAI CUI
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Pore Surface ◽  
Ribosomal Rna Gene ◽  
Hyphal System ◽  
Cotton Blue ◽  
A New Species

A new species of Fistulina, F. tasmanica sp. nov., is described and illustrated from Tasmania in Australia. Fistulina tasmanica is distinguished by its pileate and fleshy basidiomata with rose pore surface, fibrous context, separated tubes with small pores (6–7 per mm), a monomitic hyphal system with only clamped generative hyphae, subellipsoid to ellipsoid basidiospores (5.4–6 × 3.4–4 μm) which are negative in Melzer’s reagent and cotton blue. Phylogenetic analyses inferred from the internal transcribed spacer regions (ITS) and the large subunit of nuclear ribosomal RNA gene (nLSU) sequences also confirmed that F. tasmanica is a new member within Fistulina.

scholarly journals Taxonomy and SSU rDNA-Based Phylogeny of Two Heterotrich Ciliates (Ciliophora, Heterotrichea) Collected From Subtropical Wetlands of China, Including the Description of a New Species, Linostomella pseudovorticella n. sp.

2021 ◽  
Vol 12 ◽  
Author(s):  
Didi Jin ◽  
Xuetong Zhao ◽  
Tingting Ye ◽  
Jie Huang ◽  
Alan Warren ◽  
...  
Keyword(s):  
New Species ◽  
Food Web ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Ssu Rdna ◽  
Microbial Food Web ◽  
Model Organisms ◽  
Rdna Sequences ◽  
The Family ◽  
A New Species

The Heterotrichea Stein, 1859 are a group of ciliated protists (single-celled eukaryotes) that occur in a wide variety of aquatic habitat where they play important roles in the flow of nutrients and energy within the microbial food web. Many species are model organisms for research in cytology and regenerative biology. In the present study, the morphology and phylogeny of two heterotrich ciliates, namely, Linostomella pseudovorticella n. sp. and Peritromus kahli Villeneuve-Brachon, 1940, collected from subtropical wetlands of China, were investigated using morphological and molecular methods. L. pseudovorticella n. sp. differs from its only known congener, Linostomella vorticella Ehrenberg, 1833 Aescht in Foissner et al., 1999, by having more ciliary rows (48–67, mean about 56 vs. 26–51, mean about 42) and its small-subunit (SSU) rDNA sequence, which shows a 15-bp divergence. Although P. kahli has been reported several times in recent decades, its infraciliature has yet to be described. A redescription and improved diagnosis of this species based on a combination of previous and present data are here supplied. Phylogenetic analyses based on SSU rDNA sequences revealed that the genus Linostomella is positioned within Condylostomatidae, and Peritromidae is sister to Climacostomidae with relatively low support, and the family Spirostomidae is the root branch of the class Heterotrichea.

scholarly journals Multi-Gene Phylogeny and Taxonomy of Hydnellum (Bankeraceae, Basidiomycota) from China

2021 ◽  
Vol 7 (10) ◽  
pp. 818
Author(s):  
Yan-Hong Mu ◽  
Jia-Rui Yu ◽  
Ting Cao ◽  
Xiang-Hua Wang ◽  
Hai-Sheng Yuan
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Ribosomal Rna Gene ◽  
Morphological Studies

The genus Hydnellum is an important group of stipitate hydnaceous fungi which can form ectomycorrhiza with many species of woody plants. In recent decades, the frequency and number of basidiocarps observed in China have been declining significantly. So far, however, we know little about the species diversity of Hydnellum in China. In this study, we conducted molecular phylogenetic analyses based on sections of multiple loci, including the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the small subunit of nuclear ribosomal RNA gene (SSU) and the second-largest subunit of RNA polymerase II gene (RPB2), as well as morphological studies, of collected samples of Hydnellum from China. We also inferred Maximum Likelihood and Bayesian phylogenies for the order Thelephorales from the dataset of the combined nLSU and ITS. This study has revealed the phylogenetic position of Hydnellum in the order Thelephorales, and phylogenetically confirmed ten major clades in Thelephorales; Twenty-nine taxa are proposed, described or reported, including 10 new subgenera (Hydnellum subgenus Hydnellum, subg. Caesispinosum, subg. Croceum, subg. Inflatum, subg. Rhizomorphum, subg. Scabrosum, subg. Spongiosum, subg. Subindufibulatum, subg. Violaceum and subg. Zonatum), 11 new species (Hydnellum atrorubrum, H. atrospinosum, H. bomiense, H. brunneorubrum, H. fibulatum, H. granulosum, H. inflatum, H. rubidofuscum, H. squamulosum, H. sulcatum and H. yunnanense), 3 newly recorded species (H. caeruleum, H. peckii and H. spongiosipes) and 5 notable specimens (Hydnellum sp 1, H. sp 2, H. sp 3, H. sp 4 and H. sp 5). A classification system based on the morphological characteristics (especially the hyphal structure types) and molecular analyses is proposed to accommodate most species in Hydnellum. The distinguishing characters of the subgenera and the new species with their closely related taxa are discussed. A key to the species of Hydnellum from China is provided.

Morphological and molecular data on a new species of Plagiorhynchus Lühe, 1911 (Acanthocephala: Plagiorhynchidae) from the long-billed curlew (Numenius americanus) from northern Mexico

2019 ◽  
Vol 94 ◽  
Author(s):  
M. García-Varela ◽  
J.-K. Park ◽  
J.S. Hernández-Orts ◽  
C.D. Pinacho-Pinacho
Keyword(s):  
New Species ◽  
Marine Mammals ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Molecular Data ◽  
Small Subunit ◽  
Nuclear Ribosomal Dna ◽  
Northern Mexico ◽  
Numenius Americanus ◽  
A New Species

Abstract A new species of the genus Plagiorhynchus Lühe, 1911 from the intestine of the long-billed curlew (Numenius americanus) from northern Mexico is described. Plagiorhynchus (Plagiorhynchus) aznari n. sp. is morphologically distinguished from other congeneric species from the Americas by having a trunk expanded anteriorly and a cylindrical proboscis, armed with 19 longitudinal rows of hooks, with 14–15 hooks each row. Nearly complete sequences of the small subunit and large subunit of the nuclear ribosomal DNA of the new species were determined and compared with available sequences from GenBank. Phylogenetic analyses inferred from the two molecular markers consistently showed that P. (Plagiorhynchus) aznari n. sp. is closely related to P. (Plagiorhynchus) allisonae, and this clade is sister to a clade formed by P. (Prosthorhynchus) transversus and P. (Prosthorhynchus) cylindraceus from Plagiorhynchidae. The new species represents the second record of the genus in Mexico and the fourth species in the Americas. The phylogenetic relationships among the members of the order Polymorphida in this study provide significant insights into the evolution of ecological associations between parasites and their definitive hosts. Our analyses suggest that the colonization of marine mammals, fish-eating birds and waterfowl in Polymorphidae might have occurred independently, from a common ancestor of Centrorhynchidae and Plagiorhynchidae that colonized terrestrial birds and mammals.

Description of Aphelenchoides stellatus n. sp. (Nematoda: Aphelenchoididae) found in packaging wood from Japan

Nematology ◽  
2014 ◽  
Vol 16 (5) ◽  
pp. 621-630 ◽  
Author(s):  
Yiwu Fang ◽  
Jianfeng Gu ◽  
Xuan Wang ◽  
Hongmei Li
Keyword(s):  
New Species ◽  
Excretory Pore ◽  
Phylogenetic Analyses ◽  
Nerve Ring ◽  
Lateral Field ◽  
Male And Female ◽  
Female Tail ◽  
Morphological Status ◽  
Group 3 ◽  
A New Species

Aphelenchoides stellatusn. sp. is described and figured. The new species was isolated from packaging wood from Japan imported to Ningbo harbour, China. The new species has a body length of 485-533 μm (males) and 547-699 μm (females). The cuticle is weakly annulated and there are four lines in the lateral field. The stylet is 9-11 μm long and has small basal swellings. The excretory pore is located posterior to the nerve ring. Spicules smoothly curved, rose-thorn shaped. Apex and rostrum round, only slightly offset, dorsal limb 19-21 μm long. Male tail bearing six (2 + 2 + 2) caudal papillae. The female spermatheca is axial and oblong with round sperm present in multiple rows. Both male and female tail pegs have 3-4 processes, appearing star-like under SEM. The new species belongs to the Group 3 category ofAphelenchoidesspecies. Phylogenetic analyses based on full length ITS and 28S D2/D3 region of rDNA confirmed its morphological status as a new species.

Phialocephala sphaeroides sp. nov., a new species among the dark septate endophytes from a boreal wetland in Canada

2004 ◽  
Vol 82 (5) ◽  
pp. 607-617 ◽  
Author(s):  
B J Wilson ◽  
H D Addy ◽  
A Tsuneda ◽  
S Hambleton ◽  
R S Currah
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Bromocresol Purple ◽  
Internal Transcribed Spacer Region ◽  
Sequence Comparisons ◽  
Yellow Colour ◽  
Prolonged Incubation ◽  
Phialocephala Fortinii ◽  
A New Species

Dark septate root endophytic fungi from plants growing on either side of an abrupt wetland–upland ecotone included isolates of Phialocephala fortinii Wang & Wilcox, Leptodontidium orchidicola Sigler & Currah, Hetero conium chaetospira (Grove) Ellis, and a hitherto undescribed fungus resembling P. fortinii. Six isolates of this species were recovered and were distinctive in (i) producing an orange–tan diffusible pigment in culture, (ii) causing a yellow colour shift on casamino acids medium containing bromocresol purple, (iii) having the ability to liquefy gelatin, and microscopically, (iv) forming hyaline conidia from phialides arranged in large spherical heads after prolonged incubation at 5 °C. First-formed or primary conidia are bullet shaped, 1–1.5 µm × 2–3 µm; subsequent conidia are spherical and 1–1.5 µm in diameter. Small subunit and internal transcribed spacer region sequence comparisons with P. fortinii and other Phialocephala species supported placing these six unique strains in a new species, Phialocephala sphaeroides B.J. Wilson sp. nov. Phylogenetic analyses also suggest that P. sphaeroides is affiliated with mollisioid taxa in the Dermateaceae. In contrast with P. fortinii, which was isolated on both sides of the ecotone, P. sphaeroides was obtained only from plants in the highly acidic, Sphagnum-dominated wetland habitat and not from the same species in the less acidic, aspen-dominated upland site.Key words: inoperculate discomycetes, phialidic anamorph, Helotiales, root endophytes, Loramycetaceae, Dermateaceae, Mollisia.

Description of Ektaphelenchus berbericus n. sp. (Rhabditida: Ektaphelenchinae) from eastern Iran

Nematology ◽  
2016 ◽  
Vol 18 (9) ◽  
pp. 1063-1077 ◽  
Author(s):  
Somaye Alvani ◽  
Esmat Mahdikhani-Moghadam ◽  
Robin M. Giblin-Davis ◽  
Majid Pedram
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Slight Variation ◽  
Internal Transcribed Spacer Region ◽  
Lateral Field ◽  
Ribosomal Rna Gene ◽  
Eastern Iran

Ektaphelenchus berbericus n. sp. was recovered from soil samples collected in eastern Iran and is described and illustrated based on morphological, morphometric and molecular data. The new species is characterised by having female body 512-691 μm long, lip region separated from rest of body by a shallow depression, lips separated and equally sized, 19-22 μm long stylet with wide lumen and lacking knobs or swellings at its base, cuticle with fine, but distinct transverse annuli and three lines in lateral field, excretory pore located at base of metacorpus (with slight variation in position), reproductive system monodelphic-prodelphic with spheroid and fine sperm cells inside spermatheca in some individuals and short post-vulval uterine sac (PUS), rectum and anus vestigial (invisible in few individuals), conical posterior body end (tail), narrowing at mid-point between anus and rounded tail tip, and males lacking. The new species is typologically similar to species belonging to four genera: Devibursaphelenchus, Ektaphelenchoides, Ektaphelenchus and Seinura, by a combination of morphological characters, e.g., gross morphology of stylet (lacking knobs or swellings at base), morphology of posterior body end (having short conical tail), PUS length, and having a vestigial anus and rectum in most individuals. In molecular phylogenetic analyses using sequences of the partial small subunit of the ribosomal RNA gene (SSU) and the D2-D3 expansion segments of the large subunit (LSU) ribosomal RNA gene, the new species is close to the Ektaphelenchoides/Cryptaphelenchus clade in an inferred SSU tree, and formed a clade with Ektaphelenchoides and Devibursaphelenchus spp. in a D2-D3 LSU tree. Further phylogenetic analyses using full length sequences of the internal transcribed spacer region (ITS) (= ITS1 + 5.8S + ITS2) corroborated results from the SSU and D2-D3 LSU trees, and the multilocus analyses using the combined SSU and LSU data placed the new species in a robustly supported clade with Ektaphelenchoides poinari and Devibursaphelenchus lini.

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