Phylogenetic relationships of Ibervillea and Tumamoca (Coniandreae, Cucurbitaceae), two genera of the dry lands of North America

Phytotaxa ◽  
2015 ◽  
Vol 201 (3) ◽  
pp. 197
Author(s):  
Rafael Lira ◽  
Victoria Sosa ◽  
Talitha Legaspi ◽  
Patricia Dávila
Keyword(s):  
Phylogenetic Relationships ◽  
Morphological Characters ◽  
Monophyletic Group ◽  
Total Evidence ◽  
Southern United States ◽  
Priority Rule ◽  
Single Specimen ◽  
Bayesian Analyses ◽  
Phylogenetic Studies ◽  
Taxonomic Studies

We examine the limits and phylogenetic relationships of Ibervillea and Tumamoca belonging to tribe Coniandreae in the Cucurbitaceae. These taxa are found in xeric areas from southern United States to Guatemala. There has been no previous phylogenetic studies considering all their taxa together, just partially. Furthermore, we include as well species of Dieterlea, another similar and sympatric genus which recognition is under debate, formerly considered as a synonym of Ibervillea. Using molecular and morphological characters we performed molecular and total evidence parsimony and Bayesian analyses. Our results confirm that species in Ibervillea and Dieterlea are part of a monophyletic group, supporting the integration of both genera as proposed in previous phylogenetic and taxonomic studies. By examining all the species of the three genera, our results are the first to suggest that Tumamoca is also part of this monophyletic group. Therefore we propose that the species of Ibervillea, Dieterlea, and one species of Tumamoca should be included into the same genus. According to the priority rule, Ibervillea is the name to be used. Tumamoca macdougalli needs to be transferred to Ibervillea and the combination is made here. We suggest that the second species in Tumamoca, T. mucronata, known by a single specimen that is lost, does not deserve recognition.

Phylogeny of Palaearctic Pharyngodonidae parasite species of Testudinidae: a morphological approach

2003 ◽  
Vol 81 (11) ◽  
pp. 1885-1893 ◽  
Author(s):  
Salah Bouamer ◽  
Serge Morand
Keyword(s):  
Phylogenetic Relationships ◽  
Type Species ◽  
Parasite Species ◽  
Morphological Characters ◽  
Monophyletic Group ◽  
Ancestral State ◽  
Morphological Approach ◽  
Species Descriptions

The phylogenetic relationships of 23 oxyurid species from five genera (21 parasite species of the Palaearctic Testudinidae, 1 parasite species of Uromastix acanthinurus Bell, 1825 from Algeria, and 1 parasite species of Cteno sa ura pectinata (Wiegmann, 1834) from Mexico) were investigated using 30 morphological characters obtained from species descriptions. The nonweighted analysis produced one shortest tree. All species of the ingroup form a monophyletic group and the oxyurid species of Testudinidae form a monophyletic group. The type species of the genus Alaeuris Thapar, 1925 is the basal member of the species parasitizing Testudinidae. The analysis confirms the monophyly of the genus Thaparia Ortlepp, 1933, whereas the genera Mehdiella Seurat, 1918 and Tachygonetria Wedl, 1862 are considered paraphyletic groups. The large diversification in the genus Tachygonetria is linked to their position in the host caecum. The ancestral state is in the paramucous and the derived state is in the centre of the caecum. This suggests that recent speciation in the group occurs in the centre of the caecum.

New species of Crella (Pytheas) Topsent, 1890 and Crellomima Rezvoi, 1925 (Crellidae, Poecilosclerida, Demospongiae) from Chilean shallow and Argentinean deep waters, with a synthesis on the known phylogenetic relationships of crellid sponges

Zootaxa ◽  
2021 ◽  
Vol 5052 (3) ◽  
pp. 353-379
Author(s):  
JULIO C.C. FERNANDEZ ◽  
MARIANELA GASTALDI ◽  
GERMÁN ZAPATA-HERNÁNDEZ ◽  
LUIS M. PARDO ◽  
FABIANO L. THOMPSON ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Morphological Characters ◽  
Molecular Data ◽  
Southern Chile ◽  
Deep Waters ◽  
Molecular Phylogenetic ◽  
Molecular Phylogenies ◽  
Taxonomic Studies ◽  
Phylogenetic Affinities

Here, we describe four new species of Crellidae Dendy, 1922 and discuss characters and relationships from published molecular phylogenies including crellid sponges. New species proposed are Crella (Pytheas) chiloensis Fernandez, Gastaldi, Pardo & Hajdu, sp. nov., from southern Chile (15 m depth), C. (P.) desventuradae Fernandez, Gastaldi, Zapata-Hernández & Hajdu, sp. nov., from Desventuradas Archipelago (10–20 m depth), Crella (P.) santacruzae Fernandez, Gastaldi, Thompson & Hajdu, sp. nov., from deep waters off Argentina (750 m depth) and Crellomima sigmatifera Fernandez, Gastaldi & Hajdu, sp. nov., from the Chilean fjords region (ca. 20 m depth). These new species are set apart from each other and from known species mainly due to aspects of their spiculation. Chelae microscleres and acanthostyles supply characters that might be used to infer phylogenetic relationships and to verify the monophyly of Crella Gray, 1867 and Crellidae, which has seemingly been contradicted by preliminary molecular data available in the systematics’ literature. Our own interpretation of phylogenetic affinities, in the light of morphological characters from previous taxonomic studies, argues for a classification reassessment of materials (vouchers) included in these molecular phylogenies, especially in the case of Crella incrustans (Carter, 1885). We argue that currently available molecular phylogenetic outcomes for crellid sponges are not supportive of the polyphyly of Crella and Crellidae.  

Total evidence analysis of the phylogenetic relationships of bandicoots and bilbies (Marsupialia: Peramelemorphia): reassessment of two species and description of a new species

Zootaxa ◽  
2018 ◽  
Vol 4378 (2) ◽  
pp. 224 ◽  
Author(s):  
KENNY J. TRAVOUILLON ◽  
MATTHEW J. PHILLIPS
Keyword(s):  
New Species ◽  
Late Miocene ◽  
Phylogenetic Relationships ◽  
Taxonomic Status ◽  
Molecular Data ◽  
Total Evidence ◽  
Bayesian Analyses ◽  
Early Pliocene ◽  
Evidence Analysis ◽  
A New Species

The phylogenetic relationships of bandicoots and bilbies have been somewhat problematic, with conflicting results between morphological work and molecular data. This conflict makes it difficult to assess the taxonomic status of species and subspecies within this order, and also prevents accurate evolutionary assessments. Here, we present a new total evidence analysis, combining the latest cranio-dental morphological matrix containing both modern and fossil taxa, with molecular data from GenBank. Several subspecies were scored in the morphological dataset to match the molecular data available. Both parsimony and Bayesian analyses were performed, giving similar topologies except for the position of four fossil taxa. Total evidence dating places the peramelemorphian crown origin close to the Oligocene/Miocene boundary, and the radiations of most modern genera beginning in the Late Miocene or Early Pliocene. Our results show that some species and subspecies require taxonomic reassessment, and are revised here. We also describe a new, extinct species from the Nullarbor region. This suggests that the number of recently extinct peramelemorphian species is likely to further increase. 

scholarly journals The phylogenetic relationships of neosuchian crocodiles and their implications for the convergent evolution of the longirostrine condition

2019 ◽  
Author(s):  
Sebastian S Groh ◽  
Paul Upchurch ◽  
Paul M Barrett ◽  
Julia J Day
Keyword(s):  
Bayesian Methods ◽  
Phylogenetic Relationships ◽  
Convergent Evolution ◽  
Morphological Characters ◽  
Late Triassic ◽  
Continuous Data ◽  
Comprehensive Review ◽  
Phylogenetic Studies ◽  
History Of ◽  
First Time

Abstract Since their origin in the Late Triassic, crocodylomorphs have had a long history of evolutionary change. Numerous studies examined their phylogeny, but none have attempted to unify their morphological characters into a single, combined dataset. Following a comprehensive review of published character sets, we present a new dataset for the crocodylomorph clade Neosuchia consisting of 569 morphological characters for 112 taxa. For the first time in crocodylian phylogenetic studies, quantitative variation was treated as continuous data (82 characters). To provide the best estimate of neosuchian relationships, and to investigate the origins of longirostry, these data were analysed using a variety of approaches. Our results show that equally weighted parsimony and Bayesian methods cluster unrelated longirostrine forms together, producing a topology that conflicts strongly with their stratigraphic distributions. By contrast, applying extended implied weighting improves stratigraphic congruence and removes longirostrine clustering. The resulting topologies resolve the major neosuchian clades, confirming several recent hypotheses regarding the phylogenetic placements of particular species (e.g. Baryphracta deponiae as a member of Diplocynodontinae) and groups (e.g. Tethysuchia as non-eusuchian neosuchians). The longirostrine condition arose at least three times independently by modification of the maxilla and premaxilla, accompanied by skull roof changes unique to each longirostrine clade.

scholarly journals Caudal osteology and its application to reconstruct phylogenetic relationship in the genus Garra

2020 ◽  
Vol 37 (3) ◽  
pp. 245-249
Author(s):  
Sevil Sungur ◽  
Soheil Eagderi ◽  
Pariya Jalili ◽  
Erdogan Cicek
Keyword(s):  
Phylogenetic Tree ◽  
Phylogenetic Relationship ◽  
Phylogenetic Relationships ◽  
Systematic Position ◽  
Monophyletic Group ◽  
Caudal Fin ◽  
Caudal Skeleton ◽  
Valuable Source ◽  
Taxonomic Studies

Among cyprinid family, little information is available about the phylogenetic relationships of the members of genus Garra in Iran. The structure of caudal skeleton as a valuable source in taxonomic studies of fishes can help to determine their systematic position. Hence, this study was conducted to compare the osteological features of caudal fin skeleton and reconstructing phylogenetic tree of the Iranian members of genus Garra. For this purpose, five specimens of every selected (except Iran blind carp with two specimens from each morphotype) taxon were cleared and stained to examine the osteological characteristics of their caudal fin skeleton. Also, Kura barbel (Barbus cyri) and Barzam (Capoeta trutta) were designed as outgroup. The results showed that members of Garra constitute a monophyletic group. The results revealed that the caudal skeleton features cannot discriminate the members of genus Garra at the level of species because of small number of extractable characters and their states.

Morphological cladistic analysis of Ophiurolepis Matsumoto, 1915 (Ophiurida: Ophiuridae) from the Southern Ocean

Zootaxa ◽  
2007 ◽  
Vol 1401 (1) ◽  
pp. 33 ◽  
Author(s):  
REBECCA L. HUNTER
Keyword(s):  
Phylogenetic Analysis ◽  
Southern Ocean ◽  
Phylogenetic Relationships ◽  
Maximum Parsimony ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Monophyletic Group ◽  
The Antarctic

A phylogenetic analysis using morphological characters was done on the Antarctic ophiuroid genus Ophiurolepis Matsumoto, 1915. This genus is one of the more abundant and ecologically dominant ophiuroid genera in the Antarctic and surrounding Southern Ocean. Maximum parsimony was used to infer phylogenetic relationships. Although strongly supported nodes were not recovered for most groupings within Ophiurolepis, this first attempt at a phylogeny revealed the presence of three tentative clades. Two of the three Ophiurolepis clades included species currently assigned to other genera, but closely allied with Ophiurolepis in the taxonomic literature. This indicates that Ophiurolepis as currently defined is not a monophyletic group. Additional forms of data, namely molecular, are needed to more definitively resolve relationships within this group.

Unravelling phylogenetic relationships among regionally co-existing species: Hydropsyche species (Trichoptera: Hydropsychidae) in the Loire River

Zootaxa ◽  
2010 ◽  
Vol 2556 (1) ◽  
pp. 51 ◽  
Author(s):  
BERNHARD STATZNER ◽  
CHRISTOPHE J. DOUADY ◽  
LARA KONECNY ◽  
SYLVAIN DOLÉDEC
Keyword(s):  
Phylogenetic Relationships ◽  
Regional Scale ◽  
Morphological Characters ◽  
Total Evidence ◽  
Data Matrix ◽  
Future Research ◽  
Small Scale ◽  
Ecological Studies ◽  
Ecological Data ◽  
Loire River

Taxonomy is undoubtedly complementary to other fields in biology such as ecology, and both ecologists and taxonomists increasingly acknowledge that they can profit from phylogenetic ecology or ecological phylogeny, respectively. However, such mutual relations between these disciplines are constrained by traditional focuses on different operational scales: taxonomists are more familiar with large scales (e.g., global, continental, many species of a given clade), whereas ecologists are more familiar with small scales (regional, ecosystems, habitats, few species of a given clade). To foster mutually fruitful, 2-way exchanges between taxonomy and ecology at such smaller scales requires assessments of the small-scale performance of taxonomic practices so far used at larger scales. Such assessments are the objective of this study. To combine quantified ecology and phylogeny at the smaller scale, we designed a research project using 9 species of Hydropsyche (Trichoptera) from the Loire River (i.e., we focus on the regional scale). Here, we tried to unravel the phylogenetic relationships of this regional set of species using (1) many different characters (molecular and morphological characters of larvae and adults), (2) taxonomic congruence instead of total evidence (as the former provides more opportunities for future research on links between different data sets), and (3) an explicit data matrix and analysis methods that are commonly recommended for phylogenetic studies (e.g., maximum parsimony, maximum likelihood, bootstrapping), and we also included traditional, parsimonious, phylogenetic reasoning. Combining these elements, we obtained the following information for the regional Hydropsyche representatives from the Loire: (1) phylogenetic clusters of the species, (2) phylogenetic distances among the species, and (3) phylogenetic polarities of characters (plesioto apomorphies) in the species tree. For our future ecological studies, this will enable (1) establishment of priorities in species selections for experimental approaches, (2) establishment of relationships between ecological and phylogenetic distances, and (3) interpretation of ecological response gradients across the species in the context of evolutionary processes such as adaptation, niche conservatism, or fitness. These future ecological studies will provide elements that in turn should be useful for taxonomists wishing to include small-scale ecological data into their analyses.

Combining morphological and molecular data resolves the phylogeny of Squilloidea (Crustacea : Malacostraca)

2019 ◽  
Author(s):  
Cara Van Der Wal ◽  
Shane T. Ahyong ◽  
Simon Y. W. Ho ◽  
Luana S. F. Lins ◽  
Nathan Lo
Keyword(s):  
Phylogenetic Analysis ◽  
Adaptive Radiation ◽  
Phylogenetic Relationships ◽  
Morphological Characters ◽  
Molecular Data ◽  
Total Evidence ◽  
Morphological Data ◽  
Mantis Shrimp ◽  
Generic Groups ◽  
Morphological And Molecular Data

The mantis shrimp superfamily Squilloidea, with over 185 described species, is the largest superfamily in the crustacean order Stomatopoda. To date, phylogenetic relationships within this superfamily have been comprehensively analysed using morphological data, with six major generic groupings being recovered. Here, we infer the phylogeny of Squilloidea using a combined dataset comprising 75 somatic morphological characters and four molecular markers. Nodal support is low when the morphological and molecular datasets are analysed separately but improves substantially when combined in a total-evidence phylogenetic analysis. We obtain a well resolved and strongly supported phylogeny that is largely congruent with previous estimates except that the Anchisquilloides-group, rather than the Meiosquilla-group, is the earliest-branching lineage in Squilloidea. The splits among the Anchisquilloides- and Meiosquilla-groups are followed by those of the Clorida-, Harpiosquilla-, Squilla- and Oratosquilla-groups. Most of the generic groups are recovered as monophyletic, with the exception of the Squilla- and Oratosquilla-groups. However, many genera within the Oratosquilla-group are not recovered as monophyletic. Further exploration with more extensive molecular sampling will be needed to resolve relationships within the Oratosquilla-group and to investigate the adaptive radiation of squilloids. Overall, our results demonstrate the merit of combining morphological and molecular datasets for resolving phylogenetic relationships.

Phylogenetic relationships of Luziola (Poaceae: Oryzeae) and related genera from aquatic habitats

2006 ◽  
Vol 84 (12) ◽  
pp. 1753-1770 ◽  
Author(s):  
José L. Martínez-y-Pérez ◽  
Teresa Mejía-Saulés ◽  
Victoria Sosa
Keyword(s):  
Life Style ◽  
Phylogenetic Relationships ◽  
Phylogenetic Analyses ◽  
Sister Group ◽  
Morphological Characters ◽  
Monophyletic Group ◽  
Aquatic Habitats ◽  
Aquatic Life

Luziola is a small aquatic genus consisting of nine American species and belonging to Poaceae (subfamily Ehrhartoideae, tribe Oryzeae). We surveyed 160 morphological characters and performed phylogenetic analyses to determine relationships within the genus and between it and its closest relatives, and to deduce the evolution of a number of characters in relation to the aquatic habit. Our results confirm that Luziola is a monophyletic group and that Zizaniopsis is its sister group among taxa examined but revealed only a few clades within Luziola, the best supported of which consists of Luziola fragilis Swallen, Luziola fluitans (Michx.) Terrell & H. Rob., and Luziola peruviana J.F. Gmel. We used this phylogenetic evidence to reconstruct the evolution of several characters hypothesized to be correlated to an aquatic life style, including reduction or absence of glumes, papillae arranged in horizontal rows on the lemmas, dumb-bell shaped silica bodies, and a change from hermaphrodite to unisexual florets.

scholarly journals Phylogeny of the subfamilies of Ichneumonidae (Hymenoptera)

2019 ◽  
Vol 71 ◽  
pp. 1-156 ◽  
Author(s):  
Andrew M.R. Bennett ◽  
Sophie Cardinal ◽  
Ian D. Gauld ◽  
David B. Wahl
Keyword(s):  
Sequence Data ◽  
Elongation Factor ◽  
Parasitoid Wasp ◽  
Sister Group ◽  
Morphological Characters ◽  
Sensu Stricto ◽  
Total Evidence ◽  
Parsimony Analysis ◽  
Bayesian Analyses ◽  
Molecular Sequence Data

A combined morphological and molecular phylogenetic analysis was performed to evaluate the subfamily relationships of the parasitoid wasp family Ichneumonidae (Hymenoptera). Data were obtained by coding 135 morphological and 6 biological characters for 131 exemplar species of ichneumonids and 3 species of Braconidae (the latter as outgroups). The species of ichneumonids represent all of the 42 currently recognized subfamilies. In addition, molecular sequence data (cytochrome oxidase I “DNA barcoding” region, the D2 region of 28S rDNA and part of the F2 copy of elongation factor 1-alpha) were obtained from specimens of the same species that were coded for morphology (1309 base pairs total). The data were analyzed using parsimony and Bayesian analyses. The parsimony analysis using all data recovered previously recognized informal subfamily groupings (Pimpliformes, Ophioniformes, Ichneumoniformes), although the relationships of these three groups to each other differed from previous studies and some of the subfamily relationships within these groupings had not previously been suggested. Specifically, Ophioniformes was the sister group to (Ichneumoniformes + Pimplformes), and Labeninae was placed near Ichneumoniformes, not as sister group to all Ichneumonidae except Xoridinae. The parsimony analysis using only morphological characters was poorly resolved and did not recover any of the three informal subfamily groupings and very few of the relationships were similar to the total-evidence parsimony analysis. The molecular-only parsimony analysis and both Bayesian analyses (total-evidence and molecular-only) recovered Pimpliformes, a restricted Ichneumoniformes grouping and many of the subfamily groupings recovered in the total-evidence parsimony analysis. A comparison and discussion of the results obtained by each phylogenetic method and different data sets is provided. It is concluded that the molecular characters produced results that were relatively consistent with traditional, non-phylogenetic concepts of relationships between the ichneumonid subfamilies, whereas the morphological characters did not (at least not by themselves). The inclusion of both molecular and morphological characters using parsimony produced a topology that was the closest to the traditional subfamily relationships. The method of analysis did not greatly affect the overall topology for the molecular-only analyses, but there were differences between Bayesian and parsimony results for the total-evidence analyses (especially near the root of the tree). The Bayesian results did not seem to be altered very much by the inclusion of morphological characters, unlike in the parsimony analysis. In summary, the following groups were supported in multiple analyses regardless of the characters used or method of tree-building: Pimpliformes, higher Ophioniformes, higher Pimpliformes, (Claseinae + Pedunculinae), (Banchinae + Stilbopinae), Campopleginae, Cremastinae, Diplazontinae, Ichneumoninae (including Alomya), Labeninae, Ophioninae, Poemeniinae, Rhyssinae, and Tersilochinae sensu stricto. Conversely, Ctenopelmatinae and Tryphoninae were never recovered without inclusion of other taxa. Based on the hypothesis of relationships obtained by the total-evidence parsimony analysis, the following formal taxonomic changes are proposed: Alomyinae Förster (= Alomya Panzer and Megalomya Uchida) is once again synonymized with Ichneumoninae and is now considered a tribe (Alomyinirev. stat.); and Notostilbops Townes is transferred from Stilbopinae to Banchinae, tribe Atrophini.

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