Lespedeza hengduanshanensis comb. & stat. nov. (Leguminosae: Papilionoideae: Desmodieae) from the Hengduan Mountains of SW China

Phytotaxa ◽  
2015 ◽  
Vol 202 (2) ◽  
pp. 165 ◽  
Author(s):  
Bo Xu ◽  
Xin-Fen Gao ◽  
Libing Zhang
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Detailed Comparison ◽  
Hengduan Mountains ◽  
Wild Populations ◽  
Separate Species ◽  
Sw China ◽  
The Status

Lespedeza fasciculiflora Franchet is currently divided into two varieties, var. fasciculiflora and var. hengduanshanensis C.J. Chen. A detailed comparison of the plants from wild populations and specimens of the two varieties revealed that var. hengduanshanensis was sufficiently distinct from var. fasciculiflora to be recognized as a separate species. Our phylogenetic analysis based on DNA sequences, moreover, showed that the two varieties are not even closely related. We therefore here elevate the status of L. fasciculiflora var. hengduanshanensis to species L. hengduanshanensis (C.J. Chen) B. Xu, X.F. Gao & Li Bing Zhang, comb. & stat. nov..

A preliminary assessment of genetic divergence and distribution of Malagasy cave fish in the genus Typhleotris (Teleostei: Milyeringidae)

Zootaxa ◽  
2018 ◽  
Vol 4378 (3) ◽  
pp. 367 ◽  
Author(s):  
MIGUEL VENCES ◽  
JEAN R. RASOLOARINIAINA ◽  
JANA C. RIEMANN
Keyword(s):  
Fish Species ◽  
Dna Sequences ◽  
Phylogeographic Structure ◽  
Cave Fish ◽  
Separate Species ◽  
Tissue Samples ◽  
Widespread Occurrence ◽  
Southern Group ◽  
Distribution Ranges ◽  
The Status

The genus Typhleotris contains three poorly known blind fish species, inhabiting aquifers in the limestone plateau of south-western Madagascar. Until recently these species were known from only few localities, and their pattern of genetic differentiation remains poorly studied. In this study we analyse 122 Typhleotris tissue samples collected from 12 localities, spanning the entire known range of the genus, and use DNA sequences to assign these samples to the three species known. The phylogeny based on the mitochondrial marker cox1 revealed three main clades corresponding to the three species: Typhleotris madagascariensis, T. mararybe and T. pauliani, differing by uncorrected pairwise sequence divergences of 6.3-9.8%. The distribution ranges of the three species overlapped widely: T. mararybe was collected only in a southern group of localities, T. madagascariensis was found in both the southern and the central group of localities, and T. pauliani occurred from the northernmost site to the southern group of localities; yet the three species did not share haplotypes in two nuclear genes, except for three individuals that we hypothesize are hybrids of T. pauliani with T. madagascariensis and T. mararybe. This pattern of concordant mitochondrial and nuclear divergence despite sympatry strongly supports the status of all three taxa as separate species. Phylogeographic structure was obvious in T. madagascariensis, with two separate shallow mitochondrial clades occupying (1) the central vs. (2) the southern group of populations, and in T. pauliani, with separate mitochondrial clades for (1) the northern vs. (2) the central/southern populations. The widespread occurrence of these three cave fish species suggests that the aquifers in south-western Madagascar have at least in the past allowed episodic dispersal and gene flow of subterraneous organisms, whereas the phylogeographic pattern of T. madagascariensis and T. pauliani provides evidence for isolation and loss of connectivity in the more recent past. 

Magnolia sinostellata and relatives (Magnoliaceae)

Phytotaxa ◽  
2013 ◽  
Vol 154 (1) ◽  
pp. 47 ◽  
Author(s):  
YA-LING WANG ◽  
ERLAND EJDER ◽  
JIAN-FEN YANG ◽  
RAO LIU ◽  
LI-MING YE ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Plastid Dna ◽  
Distinct Species ◽  
Morphological Characters ◽  
Phylogenetic Study ◽  
Wild Populations ◽  
Species Status ◽  
Separate Species ◽  
Magnolia Sinostellata ◽  
Normal Meiosis

Magnolia sinostellata has been considered a synonym of Magnolia stellata by several taxonomists due to many shared morphological characters. With similar leaves and twigs, Magnolia amoena is distributed in areas near M. sinostellata. These three species were studied by comparing morphological, cytological and palynological characters, creating a maximum parsimony phylogenetic tree based on plastid DNA sequences and studying these taxa in the field. The results are as follows: M. sinostellata is a diploid, 2n=2x=38, and there are heterozygotes with paracentric inversion chromosomes in wild populations. Magnolia stellata is also a diploid, and there are heterozygotes with pericentric inversion chromosomes in wild populations. The abnormal chromosome behaviour in meiosis has serious effects on survival of the two species. Magnolia amoena is diploid with more or less normal meiosis except for a few lagging chromosomes in anaphase I and II. Magnolia stellata has a more complicated exine sculpture than the other two; exine structure is different in all three species. Separate species status for M. sinostellata is also supported by results of the plastid DNA phylogenetic study. Distributions, population descriptions and observations are provided, and based on all the evidence presented we conclude that M. sinostellata is a distinct species in M. subgenus Yulania. 

Testing the correlation between norstictic acid content and species evolution in the Cetraria aculeata group in Europe

2017 ◽  
Vol 49 (1) ◽  
pp. 39-56 ◽  
Author(s):  
Tetiana LUTSAK ◽  
Fernando FERNÁNDEZ-MENDOZA ◽  
Olga NADYEINA ◽  
Ayhan ŞENKARDEŞLER ◽  
Christian PRINTZEN
Keyword(s):  
Dna Sequences ◽  
Acid Content ◽  
Spatial Genetic Structure ◽  
Population Level ◽  
Separate Species ◽  
Phylogenetic Structure ◽  
Lichenized Ascomycetes ◽  
Central Asian ◽  
The Status ◽  
Genetic Clusters

AbstractMost lichen-forming fungi are characterized by the production of secondary metabolites. Differences in metabolite patterns have frequently served to distinguish lichen taxa with subsequent controversies about the rank of chemical variants (chemotype, variety, subspecies or species). Using a model system, we investigate whether production of norstictic acid within a group of lichenized ascomycetes is correlated with phylogenetic patterns, population differentiation or single and multi-locus haplotypes. Our study is based on DNA sequences of three gene loci (ITS, GPD, mtLSU) together with HPLC (311) and TLC (594) data from a total of 594 samples of three closely related fruticose lichens: Cetraria aculeata and C. muricata without norstictic acid, and C. steppae with norstictic acid. In nature, C. aculeata and C. steppae often occur together and the status of C. steppae as a separate species has been questioned. Our results show geographical but no phylogenetic structure of norstictic acid production and few significant associations between genetic clusters and the occurrence of norstictic acid. All frequently distributed haplotypes display differences in norstictic acid content. The few associations at the population level are most likely a by-product of spatial genetic structure, because norstictic acid was expressed only in individuals from the Mediterranean-Central Asian part of the study area. We conclude that the production of norstictic acid in the C. aculeata group is most likely triggered by the environment (climate, edaphic factors, associated symbionts). Cetraria steppae might be a different evolutionary lineage restricted to warm temperate regions but it is not uniquely characterized by the presence of norstictic acid.

scholarly journals Is biodiversity underestimated by classical herbarium-based taxonomy? A multi-disciplinary case study in Satyrium (Orchidaceae)

2020 ◽  
Vol 194 (3) ◽  
pp. 342-357
Author(s):  
Christo Botes ◽  
Timotheüs van der Niet ◽  
Richard M Cowling ◽  
Steven D Johnson
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Distinct Species ◽  
Nuclear Ribosomal Dna ◽  
Soil Types ◽  
Floral Traits ◽  
Herbarium Specimens ◽  
Separate Species ◽  
Floral Bracts

Abstract Taxa relegated to synonymy with other superficially similar taxa based on herbarium-based taxonomy may be distinct species that are only ‘rediscovered’ on the collection of new, multi-disciplinary evidence. Here we investigate the case of Satyrium jacottetiae that has been included in the concept of S. membranaceum (Orchidaceae). The two taxa share similarities in some conspicuous traits, such as the dry and membranous floral bracts, light pink labellum and laceration of the petals, but a quantitative morphometric analysis based on 23 floral traits showed that the two taxa differentiate in ordination space. We found that the taxa can be distinguished by features of the rostellum (short and broad in S. jacottetiae and elongate and notched in S. membranaceum), which are not readily apparent from examination of herbarium specimens. A phylogenetic analysis of nuclear ribosomal DNA sequences further revealed that accessions of S. jacottetiae belong to a clade that contains two other Satyrium spp. but not S. membranaceum. The two taxa have largely non-overlapping distributions on slightly different soil types, but they also maintain their integrity in the few zones of overlap despite evidence indicating that both are primarily pollinated by nocturnal moths. Coexistence in these cases of sympatry appears to be facilitated by a sequential difference in flowering times. We conclude that S. jacottetiae and S. membranaceum are morphologically, phylogenetically, geographically and ecologically distinct and should therefore be recognized as separate species. This study highlights the importance of multi-disciplinary taxonomic effort to avoid under-assessment of biodiversity.

scholarly journals Description of Nola estonica sp. nov., with comparison to N. aerugula and N. atomosa stat. rev. (Lepidoptera, Nolidae, Nolinae)

Zootaxa ◽  
2021 ◽  
Vol 5082 (5) ◽  
pp. 401-424
Author(s):  
ERKI ÕUNAP ◽  
SEI-WOONG CHOI ◽  
ALEXEY MATOV ◽  
TOOMAS TAMMARU
Keyword(s):  
Phylogenetic Analysis ◽  
South Korea ◽  
Eastern Europe ◽  
Far East ◽  
Disjunct Distribution ◽  
Dna Barcodes ◽  
Genital Morphology ◽  
Separate Species ◽  
New Synonyms ◽  
The Status

Nola estonica Õunap sp. nov. (Lepidoptera, Nolidae, Nolinae) is described based on type material from Estonia. The lectotype is designated for Glaphyra atomosa Bremer, 1861, which is reinstated from a subspecies of Nola aerugula (Hübner, [1793]) to a full species: Nola atomosa (Bremer, 1861) stat. rev. The status of these three taxa as separate species is supported by the results of phylogenetic analysis of DNA barcodes, as well as external and genital morphology of adult specimens. Two new synonyms are established as follows: Nola atomosa (Bremer, 1861) = Nola candidalis Staudinger, 1892 syn. nov. and Nola shin Inoue, 1982 syn. nov. N. estonica occurs sympatrically with N. aerugula in Estonia, and with N. atomosa in South Korea and easternmost Russia. While the available data suggest a disjunct distribution of N. estonica (eastern Europe and the temperate Far East), it appears highly possible that the species has a wide transpalaearctic distribution.  

scholarly journals High Prevalence of Three Potyviruses Infecting Cucurbits in Oklahoma and Phylogenetic Analysis of Cucurbit Aphid-Borne Yellows Virus Isolated from Pumpkins

Pathogens ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 53
Author(s):  
Vivek Khanal ◽  
Harrington Wells ◽  
Akhtar Ali
Keyword(s):  
Phylogenetic Analysis ◽  
Mosaic Virus ◽  
Zucchini Yellow Mosaic Virus ◽  
Yellow Mosaic Virus ◽  
Watermelon Mosaic Virus ◽  
High Prevalence ◽  
The Us ◽  
Close Relationship ◽  
The Status ◽  
Low Incidence

Field information about viruses infecting crops is fundamental for understanding the severity of the effects they cause in plants. To determine the status of cucurbit viruses, surveys were conducted for three consecutive years (2016–2018) in different agricultural districts of Oklahoma. A total of 1331 leaf samples from >90 fields were randomly collected from both symptomatic and asymptomatic cucurbit plants across 11 counties. All samples were tested with the dot-immunobinding assay (DIBA) against the antisera of 10 known viruses. Samples infected with papaya ringspot virus (PRSV-W), watermelon mosaic virus (WMV), zucchini yellow mosaic virus (ZYMV), and cucurbit aphid-borne-yellows virus (CABYV) were also tested by RT-PCR. Of the 10 viruses, PRSV-W was the most widespread, with an overall prevalence of 59.1%, present in all 11 counties, followed by ZYMV (27.6%), in 10 counties, and WMV (20.7%), in seven counties, while the remaining viruses were present sporadically with low incidence. Approximately 42% of the infected samples were positive, with more than one virus indicating a high proportion of mixed infections. CABYV was detected for the first time in Oklahoma, and the phylogenetic analysis of the first complete genome sequence of a CABYV isolate (BL-4) from the US showed a close relationship with Asian isolates.

scholarly journals Bioinvasions of the Medfly Ceratitis capitata: Source Estimation Using DNA Sequences at Multiple Intron Loci

Genetics ◽  
1999 ◽  
Vol 153 (1) ◽  
pp. 351-360 ◽  
Author(s):  
Neil Davies ◽  
Francis X Villablanca ◽  
George K Roderick
Keyword(s):  
Population Structure ◽  
Latin America ◽  
Dna Sequences ◽  
Ceratitis Capitata ◽  
Fruit Fly ◽  
Ecological Processes ◽  
The Status ◽  
Considerable Controversy ◽  
Source Populations ◽  
Traditional Population

Abstract The Mediterranean fruit fly, Ceratitis capitata, is a devastating agricultural pest that threatens to become established in vulnerable areas such as California and Florida. Considerable controversy surrounds the status of Californian medfly infestations: Do they represent repeated introductions or the persistence of a resident population? Attempts to resolve this question using traditional population genetic markers and statistical methods are problematic because the most likely source populations in Latin America were themselves only recently colonized and are genetically very similar. Here, significant population structure among several New World medfly populations is demonstrated through the analysis of DNA sequence variation at four intron loci. Surprisingly, in these newly founded populations, estimates of population structure increase when measures of subdivision take into account the relatedness of alleles as well as their frequency. A nonequilibrium, likelihood-based statistical test that utilizes multilocus genotypes suggests that the sole medfly captured in California during 1996 was introduced from Latin America and was less likely to be a remnant of an ancestral Californian population. Many bioinvasions are hierarchical in nature, consisting of several sequential or overlapping invasion events, the totality of which can be termed a metainvasion. Phylogenetic data from multilocus DNA sequences will be vital to understanding the evolutionary and ecological processes that underlie metainvasions and to resolving their constituent levels.

Phylogenetic Analysis of Trichaptum Based on Nuclear 18S, 5.8S and ITS Ribosomal DNA Sequences

Mycologia ◽  
1997 ◽  
Vol 89 (5) ◽  
pp. 727 ◽  
Author(s):  
Kwan S. Ko ◽  
Soon G. Hong ◽  
Hack S. Jung
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Dna ◽  
Dna Sequences

scholarly journals The life-cycle of the avian haemosporidian parasite Haemoproteus majoris, with emphasis on the exoerythrocytic and sporogonic development

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Mikas Ilgūnas ◽  
Carolina Romeiro Fernandes Chagas ◽  
Dovilė Bukauskaitė ◽  
Rasa Bernotienė ◽  
Tatjana Iezhova ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Life Cycle ◽  
Dna Sequences ◽  
Parus Major ◽  
Life Cycles ◽  
Internal Organs ◽  
Haemosporidian Parasite ◽  
Biting Midges ◽  
Vector Identity ◽  
Bayesian Phylogeny

Abstract Background Haemoproteus parasites (Haemosporida, Haemoproteidae) are cosmopolitan in birds and recent molecular studies indicate enormous genetic diversity of these pathogens, which cause diseases in non-adapted avian hosts. However, life-cycles remain unknown for the majority of Haemoproteus species. Information on their exoerythrocytic development is particularly fragmental and controversial. This study aimed to gain new knowledge on life-cycle of the widespread blood parasite Haemoproteus majoris. Methods Turdus pilaris and Parus major naturally infected with lineages hPHYBOR04 and hPARUS1 of H. majoris, respectively, were wild-caught and the parasites were identified using microscopic examination of gametocytes and PCR-based testing. Bayesian phylogeny was used to determine relationships between H. majoris lineages. Exoerythrocytic stages (megalomeronts) were reported using histological examination and laser microdissection was applied to isolate single megalomeronts for genetic analysis. Culicoides impunctatus biting midges were experimentally exposed in order to follow sporogonic development of the lineage hPHYBOR04. Results Gametocytes of the lineage hPHYBOR04 are indistinguishable from those of the widespread lineage hPARUS1 of H. majoris, indicating that both of these lineages belong to the H. majoris group. Phylogenetic analysis supported this conclusion. Sporogony of the lineage hPHYBOR04 was completed in C. impunctatus biting midges. Morphologically similar megalomeronts were reported in internal organs of both avian hosts. These were big roundish bodies (up to 360 μm in diameter) surrounded by a thick capsule-like wall and containing irregularly shaped cytomeres, in which numerous merozoites developed. DNA sequences obtained from single isolated megalomeronts confirmed the identification of H. majoris. Conclusions Phylogenetic analysis identified a group of closely related H. majoris lineages, two of which are characterized not only by morphologically identical blood stages, but also complete sporogonic development in C. impunctatus and development of morphologically similar megalomeronts. It is probable that other lineages belonging to the same group would bear the same characters and phylogenies based on partial cytb gene could be used to predict life-cycle features in avian haemoproteids including vector identity and patterns of exoerythrocytic merogony. This study reports morphologically unique megalomeronts in naturally infected birds and calls for research on exoerythrocytic development of haemoproteids to better understand pathologies caused in avian hosts.

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