scholarly journals Structure of the platelet glycoprotein Ib receptor in complex with a novel antithrombotic agent Agkisacucetin

Blood ◽  
2020 ◽  
Author(s):  
Jing Wang ◽  
Yongxiang Gao ◽  
Lan Chen ◽  
Yugang Guo ◽  
Siyi Hu ◽  
...  

Agkisacucetin is a snake C-type lectin-like protein (snaclec) isolated from the venom of Deinagkistrodon acutus (formerly Agkistrodon acutus), which is a novel anti-thrombotic drug candidate currently in phase 2 clinical trials. Agkisacucetin specifically recognizes the platelet receptor glycoprotein Ib α chain (GPIbα) to block GPIb and von Willebrand Factor (VWF) interaction. In this study, we solved the crystal structure of GPIbα N-terminal domain (residue 1-305) in complex with Agkisacucetin to understand their molecular recognition mechanism. Crystal structure showed that Agkisacucetin mainly contacts GPIbα at the C-terminal part of the conserved leucine rich repeat (LRR) domain (LRR-6 to LRR-8) and the previously described "β-switch" region through β chain. In addition, we found that Agkisacucetin α chain also contacts part of the GPIbα C-terminal peptide after the LRR domain through complementary charge interactions. This C-terminal peptide plays a key role in GPIbα and thrombin recognition. Therefore, our structure revealed that Agkisacucetin can sterically block the interaction of GPIb receptor with both VWF and thrombin proteins to inhibit platelet function. Our structural work provides key molecular insights into how an anti-thrombonic drug candidate recognizes GPIb receptor to modulate platelet function to inhibit thrombosis.

Blood ◽  
1992 ◽  
Vol 80 (11) ◽  
pp. 2781-2786 ◽  
Author(s):  
M Jandrot-Perrus ◽  
KJ Clemetson ◽  
MG Huisse ◽  
MC Guillin

Abstract We describe here the alteration of thrombin specificity induced by its interaction with glycocalicin. Glycocalicin is the external part of platelet glycoprotein Ib alpha (GPIb alpha) and contains binding sites for von Willebrand factor and thrombin. Taking advantage of its solubility, we have used glycocalicin in competition assays on various thrombin activities. Glycocalicin did not inhibit chromogenic substrate hydrolysis nor diisopropylfluorophosphate iPr2 (PF) incorporation, indicating that thrombin binding to GPIb does not alter access to or the conformation of the thrombin catalytic site. Glycocalicin competitively inhibited thrombin binding to fibrin (Ki = 0.1 mumol/L) and blocked fibrinogen clotting activity of thrombin. Glycocalicin also inhibited thrombin binding to thrombomodulin in a competitive manner (Ki = 3 to 5 mumol/L), but failed to prevent thrombin interaction with protein C in the absence of thrombomodulin. Previous results have indicated that GPIb binds to thrombin within the anion binding exosite masked by the carboxy-terminal hirudin peptide 54–65. The present results confirm the implication of the anion binding exosite in GPIb recognition, and further indicate that the thrombin binding site for GPIb overlaps with the thrombin binding sites for fibrin and thrombomodulin, whereas it is distinct from the thrombin binding site for protein C. Some of the structural requirements for thrombin binding to GPIb appear to be very similar to those reported for binding to its platelet receptor. However, thrombin-GPIb interaction does not appear to compete with receptor hydrolysis but rather increases the sensitivity and the rate of platelet responses elicited by the receptor.


Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 1657-1657
Author(s):  
Kesheng Dai ◽  
Richard Bodnar ◽  
Michael Berndt ◽  
Xiaoping Du

Abstract Platelet adhesion and activation are essential for thrombosis and hemostasis. In arteries and capillaries where blood flow shear rate is high, initial platelet adhesion is dependent on the binding of von Willebrand factor (VWF) to its platelet receptor, the glycoprotein (GP) Ib-IX-V complex (GPIb-IX), which consists of four subunits, GPIbα, GPIbβ, GPIX and GPV. We have shown previously that a phosphoserine-dependent intracellular signaling molecule, 14-3-3, interacts with the C-terminal SIRYSGHSL610 sequence in the cytoplasmic domain of GPIbα, and this interaction is dependent upon phosphorylation at Serine 609 of GPIbα. Here we show that a short cell-permeable myristoylated phospho-peptide corresponding to the 14-3-3 binding sequence of GPIbα inhibits VWF binding to platelets and VWF-mediated platelet adhesion. This peptide also specifically inhibits VWF-dependent platelet agglutination induced by ristocetin but has no significant effect on platelet aggregation induced by platelet agonists such as ADP and collagen. Furthermore, intravenous injection of this phospho-peptide caused significantly prolonged bleeding time in mice. Thus, 14-3-3 interaction with GPIbα plays critical roles in VWF binding function of GPIb-IX and hemostatic function of platelets. These results also suggest a new type of anti-platelet drugs that may potentially be useful in treating thrombosis.


1990 ◽  
Vol 63 (01) ◽  
pp. 122-126 ◽  
Author(s):  
Yashuiro Katagiri ◽  
Yaeko Hayashi ◽  
Kazuo Yamamoto ◽  
Kenjiro Tanoue ◽  
Goro kosaki ◽  
...  

SummaryPlatelet membrane glycoprotein Ib (GPIb) functions as receptors for thrombin and von Willebrand factor (vWF) in the presence of ristocetin. To precisely locate the domains on GPIb interacting with vWF and thrombin, we prepared several peptides that have amino acid sequences analogous to that ol the GPIb α-chain and examined their effects on ristocetin-induced (vWFdependent) and thrombin-induced platelet aggregations. A peptide extending from residues Asp235 to Lys262 showed the strongest inhibitory effect on ristocetin-induced platelet agglutination, and a group of overlapping peptides composed of 24-28 amino acid residues representing sequences extending from Phe216 to Asp274 was found to inhibit platelet aggregation induced by thrombin. Other peptides did not inhibit platelet aggregations. Moreover the binding to platelets of the monoclonal anti-GPIb antibody (TM60) which had been shown to inhibit both ristocetin- and thrombin-induced platelet aggregations was strongly inhibited by a peptide extending from Asp249 to Asp274. These data demonstrate that the vWF-hinding domain exists in a small region between residues Asp235 and Lys262; the thrombin-interacting domain, in contrast, is located between residues Phe216 and Ala274, with a possible center of interaction in the sequence from Phe216 to Thr240 on the GPIb α-chain, and thrombin binding requires a relatively strict conformation in this domain.


1995 ◽  
Vol 306 (2) ◽  
pp. 453-463 ◽  
Author(s):  
M F Hoylaerts ◽  
K Nuyts ◽  
K Peerlinck ◽  
H Deckmyn ◽  
J Vermylen

In the absence of high shear forces, the in vitro binding of human von Willebrand factor (vWF) to its platelet receptor glycoprotein Ib (GPIb) can be promoted by two well-characterized mediators, botrocetin and ristocetin. Using purified vWF and GPIb, we have investigated the mechanisms by which ristocetin mediates this binding. Specific binding of vWF monomers to GPIb occurred with a 1:1 stoichiometry, but high-affinity binding required the participation of two ristocetin dimers. Binding was strongly dependent on pH and inhibited by low poly-L-lysine concentrations, indicating ristocetin-dependent charge neutralization during the interaction. With increasing ristocetin concentrations, vWF binding depended progressively less on the involvement of its A1 loop, which is compatible with a model in which the two ristocetin dimers bridge the vWF-GPIb complex on secondary sites. In agreement with this model, the ristocetin-dimer-promoted stabilization of vWF on GPIb was abolished by low concentrations of poly(Pro-Gly-Pro), which is known to complex ristocetin dimers. Mechanistic analysis of the inhibition of vWF binding by the recombinant vWF fragment Leu504-Ser728 (VCL), which covers the entire A1 loop, revealed an affinity of VCL for GPIb comparable with that of the botrocetin-vWF complex for GPIb, and identified a specific but 20-fold lower affinity of VCL in the presence of ristocetin. The proline-rich peptides flanking the vWF A1 loop, Cys474-Val489 and Leu694-Asp709, inhibited vWF binding semispecifically by competitively interfering with the formation of the GPIb-vWF complex rather than by complexation of free ristocetin dimers. In conclusion, ristocetin-promoted binding of vWF to its GPIb receptor results from charge neutralization and interactions involving proline residues in the vicinity of the natural interaction sites present on both GPIb and the A1 domain of vWF.


Blood ◽  
1992 ◽  
Vol 80 (11) ◽  
pp. 2781-2786 ◽  
Author(s):  
M Jandrot-Perrus ◽  
KJ Clemetson ◽  
MG Huisse ◽  
MC Guillin

We describe here the alteration of thrombin specificity induced by its interaction with glycocalicin. Glycocalicin is the external part of platelet glycoprotein Ib alpha (GPIb alpha) and contains binding sites for von Willebrand factor and thrombin. Taking advantage of its solubility, we have used glycocalicin in competition assays on various thrombin activities. Glycocalicin did not inhibit chromogenic substrate hydrolysis nor diisopropylfluorophosphate iPr2 (PF) incorporation, indicating that thrombin binding to GPIb does not alter access to or the conformation of the thrombin catalytic site. Glycocalicin competitively inhibited thrombin binding to fibrin (Ki = 0.1 mumol/L) and blocked fibrinogen clotting activity of thrombin. Glycocalicin also inhibited thrombin binding to thrombomodulin in a competitive manner (Ki = 3 to 5 mumol/L), but failed to prevent thrombin interaction with protein C in the absence of thrombomodulin. Previous results have indicated that GPIb binds to thrombin within the anion binding exosite masked by the carboxy-terminal hirudin peptide 54–65. The present results confirm the implication of the anion binding exosite in GPIb recognition, and further indicate that the thrombin binding site for GPIb overlaps with the thrombin binding sites for fibrin and thrombomodulin, whereas it is distinct from the thrombin binding site for protein C. Some of the structural requirements for thrombin binding to GPIb appear to be very similar to those reported for binding to its platelet receptor. However, thrombin-GPIb interaction does not appear to compete with receptor hydrolysis but rather increases the sensitivity and the rate of platelet responses elicited by the receptor.


Toxins ◽  
2019 ◽  
Vol 11 (7) ◽  
pp. 372 ◽  
Author(s):  
Yu-Ju Kuo ◽  
Ching-Hu Chung ◽  
Tur-Fu Huang

Snake venoms affect blood coagulation and platelet function in diverse ways. Some venom components inhibit platelet function, while other components induce platelet aggregation. Among the platelet aggregation inhibitors, disintegrins have been recognized as unique and potentially valuable tools for examining cell–matrix and cell–cell interactions and for the development of antithrombotic and antiangiogenic agents according to their anti-adhesive and anti-migration effect on tumor cells and antiangiogenesis activities. Disintegrins represent a family of low molecular weight, cysteine-rich, Arg-Gly-Asp(RGD)/Lys-Gly-Asp(KGD)-containing polypeptides, which inhibit fibrinogen binding to integrin αIIbβ3 (i.e., platelet glycoprotein IIb/IIIa), as well as ligand binding to integrins αvβ3, and α5β1 expressed on cells (i.e., fibroblasts, tumor cells, and endothelial cells). This review focuses on the current efforts attained from studies using disintegrins as a tool in the field of arterial thrombosis, angiogenesis, inflammation, and tumor metastasis, and briefly describes their potential therapeutic applications and side effects in integrin-related diseases. Additionally, novel R(K)GD-containing disintegrin TMV-7 mutants are being designed as safer antithrombotics without causing thrombocytopenia and bleeding.


Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 1128-1128 ◽  
Author(s):  
Adam D Munday ◽  
Mekdes S Mersha ◽  
Douglas Bolgiano ◽  
Barbara A. Konkle ◽  
Jose A. Lopez

Abstract Abstract 1128 Evidence first emerged in the 1930s that omega-3 (n-3) and omega-6 (n-6) fatty acids (FA) were important for normal health and growth. A 1960s study of Greenland Inuits provided the first evidence that dietary intake of n-3 FA correlated with a reduction in cardiovascular disease. Omega-3 FA (eicosapentaenoic acid [EPA] and docosahexanoic acid [DHA]), along with n-6 FA (chiefly linoleic acid) are fats essential for health, with a minimum recommended intake of 0.2% and 1% of daily calories, respectively; and a healthy ratio of n-6 to n-3 FAs of 1:1 to 1:4. Increased consumption of n-3 FA has recently been shown to correlate with a reduced death rate from coronary heart disease in both healthy individuals and those with pre-existing cardiovascular disease. Cardiovascular diseases, including myocardial infarction and stroke, are precipitated by pathological platelet thrombus formation and are the leading causes of mortality and morbidity in developed countries. In both thrombosis and hemostasis, platelets attach to areas of vessel injury by binding to von Willebrand Factor (VWF) at the injury site. The platelet receptor for VWF is the glycoprotein (GP) Ib-IX-V complex, specifically GPIbα within the complex. This interaction also mediates fluid-phase platelet aggregation in regions of elevated hydrodynamic shear stress, a process called shear-induced platelet aggregation (SIPA). Glycoprotein Ib-IX-V complex functions depend on its localization to lipid raft domains within the plasma membrane, localization mediated by palmitoylation of Cys residues and involving sequences in the subunit transmembrane and cytoplasmic domains. We reasoned that by interfering with palmitoylation or disrupting lipid rafts, or through both mechanisms, n-3 FAs would decrease platelet functions. We therefore studied the effect of n-3 FAs on platelet functions in 12 healthy adult volunteers who ingested 2400 mg of EPA + DHA daily for 2 months. Blood was drawn from the subjects before they began ingesting n-3 FAs (at weeks -4,-3, and -1), then again during the dosing period (weeks 5, 6, and 8). We assessed complete blood counts, and platelet aggregation in response to ADP (2 μM and 20 μM), arachadonic acid (ACA) (250 μg/ml and 500 μg/ml), and shear stress (at shear rates of 2000, 5000 and 10000 s−1). We also assessed GPIb-IX-V lipid raft localization. In the majority of subjects, platelet aggregation after n-3 FA treatment was reduced with low-concentrations of ADP but not with ACA. The most striking effect was on SIPA, which was reduced by 90% (±2% SEM) at 2000 s−1 and 30% (±7% SEM) at 5000 s−1. No post-treatment difference in SIPA was observed at 10000 s−1. After intake of n-3 FAs, the lipid raft content of GPIb-IX-V decreased by 50% while two raft markers, GM1 ganglioside and flotillin, remained unchanged. These findings indicate that n-3 FAs likely suppress several platelet functions, with one of the most striking being decreased adhesive activity, which correlates with decreased raft content of GPIb-IX-V. Thus, the anti-thrombotic effect of n-3 FAs results from a combination of diminished response to some soluble platelet agonists and reduced adhesive capacity. Disclosures: No relevant conflicts of interest to declare.


1994 ◽  
Vol 72 (01) ◽  
pp. 001-015 ◽  
Author(s):  
Juan J Calvete

SummaryThe glycoprotein (GP) IIb/IIIa, a Ca2+-dependent heterodimer, is the major integrin on the platelet plasma membrane. On resting platelets GPIIb/IIIa is maintained in an inactive conformation and serves as a low affinity adhesion receptor for surface-coated fibrinogen, whereas upon platelet activation signals within the cytoplasma alter the receptor function of GPIIb/IIIa (inside-out signalling), which undergoes a measurable conformational change within its exoplasmic domains, and becomes a competent receptor for soluble fibrinogen and some other RGD sequence-containing plasma adhesive proteins. Upon ligand binding, further structural alterations trigger the association of receptor-occupied GPIIb/IIIa complexes with themselves within the plane of the membrane. The simultaneous binding of dimeric fibrinogen molecules to GPIIb/IIIa clusters on adjacent platelets leads to platelet aggregation, which promotes attachment of fibrinogen-GPIIb/IIIa clusters to the cytoskeleton (outside-in signalling). This, in turn, provides the necessary physical link for clot retraction to occur, and generates a cascade of intracellular biochemical reactions which result in the formation of a multiprotein signalling complex at the cytoplasmic domains of GPIIb/IIIa. Glycoprotein IMIIa, also called αIIbβ3 in the integrin nomenclature, plays thus a primary role in both platelet adhesion and thrombus formation at the site of vascular injury. In addition, the human glycoprotein Ilb/IIIa complex is the most thoroughly studied integrin receptor, its molecular biology and major features of its primary structure having been elucidated mainly during the last six years. Furthermore, localization of functionally relevant monoclonal antibody epitopes, determination of the cross-linking sites of inhibitory peptide ligands, proteolytic dissection of the isolated integrin, and analysis of natural and artificial GPIIb/IIIa mutants have recently provided a wealth of information regarding structure-function relationships of human GPIIb/IIIa. The aim of this review is to summarize these many structural and functional data in the perspective of an emerging model. Although most of the interpretations based on structural elements of this initial biochemical model require independent confirmation, they may help us to understand the structure-function relationship of this major platelet receptor, and of other members of the integrin superfamily, as well as to perform further investigations in order to test current hypotheses.


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